Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Reverse (-)

12716668 .. 12718051

Gene Structure 1384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011795

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTCCATCAAAGGTGATGAACCACCCCCTGAACACACTGTTAAAGAAAGCAAGTTTGGAGCTATAGAGTCTTCCCCAGAATTGGGTATCCCCATCATTGATGTCAGTCTCTTCTCCCCACCATCAATTGATACTAAGGAGGCAGAGGTTGAACTAAACAAACTCAGAGCAGCTCTCAGCTCATCAGGCTGCTTCCAGGTAATAGGTCATGGGATTTCAAGTTCCTTTTTGGACAAGGTACGCGCAGCTGCGAAACAATTCTTTGAAGTTCCAGTGGAAGAGAAGCAAAGATACTCTAGAGAAATTTATGGTGGCCGTGAAGGATATGGGGAGGATGCCATTGTCTCAGAGAAGCAAATTCGTGATTGGTCCTACCGCCTAATTCTTCGTGTATTCCCTGAAGATCAAAGAAGGCTCAATCTCTGGCCAGAAAATCCAAATGATTTTGGAGAAGTTGTACATGATTATGCAACAAAGGTGAAGTTTATGATGAATGTTCTGTTTAAGGCCATGGCCATATCTTTGAATTTGCAAGAGAACAGCTTTTCGGATACGCTGTTTGGAGAACAAGCTCAGATGATAGCAAGATTCAATTTCTTTCCGCGGTATGGGACAGGATTAACTGTTCTGTTGCAGGACAAAGAAGTAGAGGGTCTTCAAGTTTTGGTGGATGGTAAATGGGTTAGAGTCCCCATTGTGCCACATGCCATTTTTGTTAATCTTGGTGCTCAAATGCAAATTATGAGTAATGACATATTCAAGAGCCCACTGCACAGGGTGGTGACAAATCCAGAAAGAATGAGGCTATCTGTGGCCTTGTTTAATGTACCAGATCCTGAAACCGAGATTGGTCCAGTGGAGAAACTGATAGATGAAACAAGGCCAAGGATATACAACAATGTCAAGAACTATTCCAGTATTAACTATAAGTGCTTTCAGAGAGGAGAAGTAGCACTTGAAACATTAAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

325

Amino Acids

36.8

Weight (kDa)

5.58

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	30 - 145	3.6e-24	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	205 - 275	1.2e-20	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	243, 604
AciI	CCGC	3 cut(s)	376, 602, 604
AclWI	GGATC	1 cut(s)	827
AcoI	YGGCCR	3 cut(s)	313, 425, 513
AcsI	RAATTY	3 cut(s)	303, 357, 526
AcuI	CTGAAG	1 cut(s)	420
AdeI	CACNNNGTG	1 cut(s)	778
AfaI	GTAC	3 cut(s)	240, 459, 828
AfiI	CCNNNNNNNGG	3 cut(s)	82, 83, 608
AgsI	TTSAA	8 cut(s)	152, 219, 266, 526, 592, 659, 760, 959
AjnI	CCWGG	1 cut(s)	195
AjuI	GAANNNNNNNTTGG	4 cut(s)	39, 71, 831, 863
AloI	GAACNNNNNNTCC	4 cut(s)	205, 237, 609, 641
AluBI	AGCT	6 cut(s)	62, 173, 180, 248, 543, 572
AluI	AGCT	6 cut(s)	62, 173, 180, 248, 543, 572
Alw21I	GWGCWC	1 cut(s)	730
Alw26I	GTCTC	2 cut(s)	113, 349
AlwI	GGATC	1 cut(s)	827
AlwNI	CAGNNNCTG	1 cut(s)	836
AoxI	GGCC	6 cut(s)	313, 425, 507, 513, 813, 881
ApeKI	GCWGC	4 cut(s)	170, 189, 245, 248
ApoI	RAATTY	3 cut(s)	303, 357, 526
Asp700I	GAANNNNTTC	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	2 cut(s)	369, 851
AsuHPI	GGTGA	3 cut(s)	26, 490, 793
AvaII	GGWCC	2 cut(s)	369, 851
BalI	TGGCCA	2 cut(s)	427, 515
BanII	GRGCYC	1 cut(s)	767
BarI	GAAGNNNNNNTAC	4 cut(s)	275, 307, 639, 671
BbsI	GAAGAC	2 cut(s)	63, 647
Bbv12I	GWGCWC	1 cut(s)	730
BbvI	GCAGC	4 cut(s)	176, 182, 235, 257
BccI	CCATC	4 cut(s)	14, 101, 130, 665
BceAI	ACGGC	1 cut(s)	300
BciT130I	CCWGG	1 cut(s)	197
BciVI	GTATCC	2 cut(s)	98, 544
BcoDI	GTCTC	2 cut(s)	113, 349
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	1 cut(s)	63
BfuI	GTATCC	2 cut(s)	98, 544
BisI	GCNGC	4 cut(s)	171, 190, 246, 249
BlsI	GCNGC	4 cut(s)	172, 191, 247, 250
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	2 cut(s)	369, 851
BmgT120I	GGNCC	2 cut(s)	369, 851
BmrFI	CCNGG	1 cut(s)	197
BmsI	GCATC	1 cut(s)	325
BpiI	GAAGAC	2 cut(s)	63, 647
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
BsaJI	CCNNGG	3 cut(s)	510, 602, 884
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 83, 608
Bse1I	ACTGG	3 cut(s)	272, 854, 915
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	3 cut(s)	510, 602, 884
BseGI	GGATG	2 cut(s)	340, 676
BseLI	CCNNNNNNNGG	3 cut(s)	82, 83, 608
BseMII	CTCAG	4 cut(s)	178, 190, 360, 587
BseNI	ACTGG	3 cut(s)	272, 854, 915
BseRI	GAGGAG	1 cut(s)	957
BseXI	GCAGC	4 cut(s)	176, 182, 235, 257
BsgI	GTGCAG	1 cut(s)	755
Bsh1236I	CGCG	2 cut(s)	243, 604
BshFI	GGCC	6 cut(s)	315, 427, 509, 515, 815, 883
BsiHKAI	GWGCWC	1 cut(s)	730
BslFI	GGGAC	2 cut(s)	625, 674
BslI	CCNNNNNNNGG	3 cut(s)	82, 83, 608
BsmAI	GTCTC	2 cut(s)	113, 349
BsmFI	GGGAC	2 cut(s)	625, 674
BsnI	GGCC	6 cut(s)	315, 427, 509, 515, 815, 883
Bsp1286I	GDGCHC	2 cut(s)	730, 767
Bsp1407I	TGTACA	1 cut(s)	457
Bsp143I	GATC	2 cut(s)	403, 832
Bsp19I	CCATGG	1 cut(s)	510
BspACI	CCGC	3 cut(s)	376, 602, 604
BspANI	GGCC	6 cut(s)	315, 427, 509, 515, 815, 883
BspCNI	CTCAG	4 cut(s)	177, 189, 359, 586
BspFNI	CGCG	2 cut(s)	243, 604
BspPI	GGATC	1 cut(s)	827
BsrGI	TGTACA	1 cut(s)	457
BsrI	ACTGG	3 cut(s)	272, 854, 915
BssECI	CCNNGG	3 cut(s)	510, 602, 884
BssMI	GATC	2 cut(s)	403, 832
BssT1I	CCWWGG	2 cut(s)	510, 884
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	2 cut(s)	40, 625
Bst6I	CTCTTC	2 cut(s)	116, 273
BstAUI	TGTACA	1 cut(s)	457
BstDEI	CTNAG	5 cut(s)	135, 164, 176, 346, 573
BstDSI	CCRYGG	2 cut(s)	510, 602
BstF5I	GGATG	2 cut(s)	340, 676
BstFNI	CGCG	2 cut(s)	243, 604
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	2 cut(s)	406, 835
BstMAI	GTCTC	2 cut(s)	113, 349
BstMBI	GATC	2 cut(s)	403, 832
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstNI	CCWGG	1 cut(s)	197
BstNSI	RCATGY	1 cut(s)	707
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	63
BstUI	CGCG	2 cut(s)	243, 604
BstV1I	GCAGC	4 cut(s)	176, 182, 235, 257
BstV2I	GAAGAC	2 cut(s)	63, 647
BstX2I	RGATCY	1 cut(s)	832
BstYI	RGATCY	1 cut(s)	832
BsuI	GTATCC	2 cut(s)	98, 544
BsuRI	GGCC	6 cut(s)	315, 427, 509, 515, 815, 883
BtgI	CCRYGG	2 cut(s)	510, 602
BtsCI	GGATG	2 cut(s)	340, 676
BtsI	GCAGTG	1 cut(s)	767
BtsIMutI	CAGTG	4 cut(s)	36, 279, 767, 861
CaiI	CAGNNNCTG	1 cut(s)	836
CfoI	GCGC	1 cut(s)	245
Cfr13I	GGNCC	2 cut(s)	369, 851
Cfr42I	CCGCGG	1 cut(s)	605
Csp6I	GTAC	3 cut(s)	239, 458, 827
CviAII	CATG	4 cut(s)	209, 461, 511, 704
CviQI	GTAC	3 cut(s)	239, 458, 827
DdeI	CTNAG	5 cut(s)	135, 164, 176, 346, 573
DpnI	GATC	2 cut(s)	405, 834
DpnII	GATC	2 cut(s)	403, 832
DraIII	CACNNNGTG	1 cut(s)	778
EaeI	YGGCCR	3 cut(s)	313, 425, 513
Eam1104I	CTCTTC	2 cut(s)	116, 273
EarI	CTCTTC	2 cut(s)	116, 273
Eco130I	CCWWGG	2 cut(s)	510, 884
Eco24I	GRGCYC	1 cut(s)	767
Eco47I	GGWCC	2 cut(s)	369, 851
Eco57I	CTGAAG	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	2 cut(s)	510, 884
EcoT38I	GRGCYC	1 cut(s)	767
ErhI	CCWWGG	2 cut(s)	510, 884
FaeI	CATG	4 cut(s)	212, 464, 514, 707
FalI	AAGNNNNNCTT	2 cut(s)	939, 971
FaqI	GGGAC	2 cut(s)	625, 674
FatI	CATG	4 cut(s)	208, 460, 510, 703
Fnu4HI	GCNGC	4 cut(s)	171, 190, 246, 249
FokI	GGATG	2 cut(s)	347, 683
FriOI	GRGCYC	1 cut(s)	767
Fsp4HI	GCNGC	4 cut(s)	171, 190, 246, 249
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	4 cut(s)	171, 190, 246, 249
HaeIII	GGCC	6 cut(s)	315, 427, 509, 515, 815, 883
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	4 cut(s)	212, 464, 514, 707
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HinfI	GANTC	3 cut(s)	68, 588, 687
HphI	GGTGA	3 cut(s)	26, 490, 793
Hpy188I	TCNGA	5 cut(s)	167, 349, 550, 576, 939
Hpy188III	TCNNGA	6 cut(s)	297, 362, 760, 791, 836, 904
HpyAV	CCTTC	2 cut(s)	314, 405
HpyCH4III	ACNGT	2 cut(s)	40, 625
HpyCH4V	TGCA	5 cut(s)	470, 532, 634, 736, 772
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	5 cut(s)	135, 164, 176, 346, 573
Hsp92II	CATG	4 cut(s)	212, 464, 514, 707
HspAI	GCGC	1 cut(s)	243
KspI	CCGCGG	1 cut(s)	605
Kzo9I	GATC	2 cut(s)	403, 832
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	4 cut(s)	176, 182, 235, 257
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	781
MalI	GATC	2 cut(s)	405, 834
MboI	GATC	2 cut(s)	403, 832
MboII	GAAGA	6 cut(s)	63, 103, 290, 377, 413, 647
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	1 cut(s)	832
MhlI	GDGCHC	2 cut(s)	730, 767
MlsI	TGGCCA	2 cut(s)	427, 515
MluCI	AATT	9 cut(s)	80, 126, 257, 303, 357, 381, 526, 592, 738
MluNI	TGGCCA	2 cut(s)	427, 515
MlyI	GAGTC	2 cut(s)	77, 696
MnlI	CCTC	6 cut(s)	133, 139, 325, 643, 795, 935
Mox20I	TGGCCA	2 cut(s)	427, 515
MroXI	GAANNNNTTC	1 cut(s)	257
MscI	TGGCCA	2 cut(s)	427, 515
MseI	TTAA	7 cut(s)	42, 504, 620, 717, 822, 921, 965
MslI	CAYNNNNRTG	1 cut(s)	465
Msp20I	TGGCCA	2 cut(s)	427, 515
MspA1I	CMGCKG	2 cut(s)	248, 604
MspR9I	CCNGG	1 cut(s)	197
MunI	CAATTG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	197
MvnI	CGCG	2 cut(s)	243, 604
MwoI	GCNNNNNNNGC	1 cut(s)	186
NcoI	CCATGG	1 cut(s)	510
NdeII	GATC	2 cut(s)	403, 832
NlaIII	CATG	4 cut(s)	212, 464, 514, 707
NmuCI	GTSAC	1 cut(s)	781
NspI	RCATGY	1 cut(s)	707
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	588
PkrI	GCNGC	4 cut(s)	172, 191, 247, 250
PleI	GAGTC	2 cut(s)	76, 695
PpsI	GAGTC	2 cut(s)	76, 695
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspPI	GGNCC	2 cut(s)	369, 851
PstNI	CAGNNNCTG	1 cut(s)	836
PsuI	RGATCY	1 cut(s)	832
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	3 cut(s)	240, 459, 828
RsaNI	GTAC	3 cut(s)	239, 458, 827
RseI	CAYNNNNRTG	1 cut(s)	465
SacII	CCGCGG	1 cut(s)	605
SaqAI	TTAA	7 cut(s)	42, 504, 620, 717, 822, 921, 965
SatI	GCNGC	4 cut(s)	171, 190, 246, 249
Sau3AI	GATC	2 cut(s)	403, 832
Sau96I	GGNCC	2 cut(s)	369, 851
SchI	GAGTC	2 cut(s)	77, 696
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	2 cut(s)	730, 767
SfaNI	GCATC	1 cut(s)	325
SfcI	CTRYAG	1 cut(s)	63
Sfr303I	CCGCGG	1 cut(s)	605
SgrBI	CCGCGG	1 cut(s)	605
SinI	GGWCC	2 cut(s)	369, 851
SmiMI	CAYNNNNRTG	1 cut(s)	465
Sse9I	AATT	9 cut(s)	80, 126, 257, 303, 357, 381, 526, 592, 738
SsiI	CCGC	3 cut(s)	376, 602, 604
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	2 cut(s)	510, 884
TaaI	ACNGT	2 cut(s)	40, 625
TasI	AATT	9 cut(s)	80, 126, 257, 303, 357, 381, 526, 592, 738
TatI	WGTACW	1 cut(s)	457
TfiI	GAWTC	1 cut(s)	588
Tru1I	TTAA	7 cut(s)	42, 504, 620, 717, 822, 921, 965
Tru9I	TTAA	7 cut(s)	42, 504, 620, 717, 822, 921, 965
TscAI	CASTG	4 cut(s)	43, 279, 774, 861
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	4 cut(s)	170, 189, 245, 248
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	3 cut(s)	33, 506, 888
TspRI	CASTG	4 cut(s)	43, 279, 774, 861
VpaK11BI	GGWCC	2 cut(s)	369, 851
XapI	RAATTY	3 cut(s)	303, 357, 526
XbaI	TCTAGA	1 cut(s)	296
XceI	RCATGY	1 cut(s)	707
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.