Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Forward (+)

56426666 .. 56430614

Gene Structure 3949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0473200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGCAGACAAAAGGAAGAAACATCTCCACTACTATTTCGTCACTCTCTATCTTTTCTCTTCACCGACATCAGAACTGCCCATCAAGATCAACACCAATCAAAGCTCGTTACAAGTTGATTGTCAAAAAAGCTAGAGTAAAAGCATTGCTAAAGGATAAACAAGCTGCACTTGAAACATTTGGAACTTATGTTGAGTCATTGACTGGAGATTCAAGGGACAAGCCATTTCTAAGGAGAGCTCTGACAGGAGTTTCCACATTAATATGCCCAAATGAAACAACAAGGCCTACGTTAGTTCGAGAGATAACAGCTTTTCAGCTGAACTTCAGAATGAGAGCTCGAGTTACAAGGCAATGGAGGCTTGCTTTGTCGCGGGATTTGTTGTTGTTAATGTTGCAAAAAGGTTATACTCTCCTTCACTGTACTGCCATATTTGTGTGCCACAGATTTCCTTTTCACTTTGTTTTGACAGTGATTATATCTTTGCCTGGTATCAGAAAAATGTTTCTATCAACCCTGCAATATAGGATCAATTTTCAAACCAAAACTTCTGGGGAAGTTTCTGGCTACAGAAAATTTCTTTCACACATCCAAGATTTGATGCAGTATTGCTTCTCTTCAGCATATTCTGTGGCCTTACTTCATAACAGTCTTGCAATCTCTTTGGATGATGAAAGTTACATGCAATCTTATTTCTCATTTGATATTCCAGGCGTTATCAAATACCAATATCATAGTACTCATTTTACTCCAGAATTTTATACCCTCAATTACTCAATTAGAGACAAGACTGACTTAATACATTACATGCAATCTTATTTCTCATTTGATATTCCAGGCGTTATCAAATACCAATATCATAGTGATGCTGTGCTTAATACATGCAGACGTCATTGCACCACTATTATGCGAACGTCGAACTTTAACAACAAGACACTTTTGAACTTTACTTGCATTGATCACTGGATTGTTGTCCACTTCAGCTTGACTTTCGTTACAGGGGAGATTCCATACAATGATTACAAGCTAGATCAGTTTGTTCCTCAAAAAACTCCAGCGTACATAAGCCAACACAACCTTCACGTACCTGAGATGATTGTAAGAGAAACAATCGAGTTTTCAGCCCGCTGTCAACGTATTGGAAGCAGAGCTGAGGTTAGCAGGAGAGAAAAGGAAGCAGGAATTGTTCCTGATCCAGATATTGACACCTACATGAAGGCAATCTCAGTTGAAGGACAAAAGAAAAACCTCCAAACTCACTGTTTTGAAGTTGATCTTCTATGGTTTTTCACTATTAATCCTAAGCTGTTACGATATGCAGTGAACGCTAGATGTGGCACTTCTCAACACCAGATGAGGCACGTCTCAACACCAGATGAACCAACTGAGGGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

465

Amino Acids

53.98

Weight (kDa)

9.44

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	892
AccII	CGCG	1 cut(s)	373
AciI	CCGC	2 cut(s)	373, 1126
AclWI	GGATC	2 cut(s)	536, 1187
AcsI	RAATTY	3 cut(s)	575, 755, 1392
AcuI	CTGAAG	3 cut(s)	310, 603, 964
AcyI	GRCGYC	1 cut(s)	889
AfaI	GTAC	4 cut(s)	424, 739, 1061, 1086
AfiI	CCNNNNNNNGG	1 cut(s)	1388
AgsI	TTSAA	6 cut(s)	173, 213, 539, 943, 1232, 1268
AjiI	CACGTC	1 cut(s)	1363
AjnI	CCWGG	3 cut(s)	487, 709, 835
AjuI	GAANNNNNNNTTGG	2 cut(s)	1062, 1094
Alw21I	GWGCWC	2 cut(s)	241, 340
Alw26I	GTCTC	2 cut(s)	777, 1369
AlwI	GGATC	2 cut(s)	536, 1187
Ama87I	CYCGRG	1 cut(s)	339
AoxI	GGCC	2 cut(s)	284, 633
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	3 cut(s)	575, 755, 1392
AseI	ATTAAT	2 cut(s)	260, 1296
AsuHPI	GGTGA	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	339
BanII	GRGCYC	2 cut(s)	241, 340
Bbv12I	GWGCWC	2 cut(s)	241, 340
BbvCI	CCTCAGC	1 cut(s)	1152
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	1 cut(s)	88
BciT130I	CCWGG	3 cut(s)	489, 711, 837
BclI	TGATCA	1 cut(s)	958
BcoDI	GTCTC	2 cut(s)	777, 1369
BfaI	CTAG	3 cut(s)	132, 1028, 1329
BfmI	CTRYAG	1 cut(s)	568
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmcAI	AGTACT	1 cut(s)	739
Bme1390I	CCNGG	3 cut(s)	489, 711, 837
BmeT110I	CYCGRG	1 cut(s)	339
BmgBI	CACGTC	1 cut(s)	1363
BmrFI	CCNGG	3 cut(s)	489, 711, 837
BmsI	GCATC	2 cut(s)	591, 856
BpmI	CTGGAG	3 cut(s)	225, 735, 1038
Bpu10I	CCTNAGC	2 cut(s)	1152, 1302
BsaAI	YACGTR	1 cut(s)	1084
BsaHI	GRCGYC	1 cut(s)	889
Bsc4I	CCNNNNNNNGG	1 cut(s)	1388
Bse1I	ACTGG	2 cut(s)	208, 968
Bse3DI	GCAATG	3 cut(s)	143, 359, 892
BseBI	CCWGG	3 cut(s)	489, 711, 837
BseGI	GGATG	2 cut(s)	588, 673
BseLI	CCNNNNNNNGG	1 cut(s)	1388
BseMI	GCAATG	3 cut(s)	143, 359, 892
BseMII	CTCAG	4 cut(s)	1080, 1143, 1239, 1377
BseNI	ACTGG	2 cut(s)	208, 968
BseXI	GCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	373
BshFI	GGCC	2 cut(s)	286, 635
BsiHKAI	GWGCWC	2 cut(s)	241, 340
BsiHKCI	CYCGRG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	1388
BsmAI	GTCTC	2 cut(s)	777, 1369
BsmBI	CGTCTC	1 cut(s)	1369
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	286, 635
BsoBI	CYCGRG	1 cut(s)	339
Bsp1286I	GDGCHC	2 cut(s)	241, 340
Bsp143I	GATC	6 cut(s)	86, 528, 958, 1030, 1192, 1273
BspACI	CCGC	2 cut(s)	373, 1126
BspANI	GGCC	2 cut(s)	286, 635
BspCNI	CTCAG	4 cut(s)	1081, 1144, 1238, 1378
BspFNI	CGCG	1 cut(s)	373
BspPI	GGATC	2 cut(s)	536, 1187
BsrDI	GCAATG	3 cut(s)	143, 359, 892
BsrI	ACTGG	2 cut(s)	208, 968
BssMI	GATC	6 cut(s)	86, 528, 958, 1030, 1192, 1273
BssNI	GRCGYC	1 cut(s)	889
Bst2UI	CCWGG	3 cut(s)	489, 711, 837
Bst4CI	ACNGT	4 cut(s)	422, 472, 650, 1262
Bst6I	CTCTTC	2 cut(s)	63, 622
BstACI	GRCGYC	1 cut(s)	889
BstBAI	YACGTR	1 cut(s)	1084
BstC8I	GCNNGC	2 cut(s)	363, 1126
BstDEI	CTNAG	6 cut(s)	230, 1089, 1152, 1225, 1302, 1386
BstF5I	GGATG	2 cut(s)	588, 673
BstFNI	CGCG	1 cut(s)	373
BstKTI	GATC	6 cut(s)	89, 531, 961, 1033, 1195, 1276
BstMAI	GTCTC	2 cut(s)	777, 1369
BstMBI	GATC	6 cut(s)	86, 528, 958, 1030, 1192, 1273
BstMWI	GCNNNNNNNGC	2 cut(s)	358, 1325
BstNI	CCWGG	3 cut(s)	489, 711, 837
BstNSI	RCATGY	3 cut(s)	685, 811, 885
BstSCI	CCNGG	3 cut(s)	487, 709, 835
BstSFI	CTRYAG	1 cut(s)	568
BstUI	CGCG	1 cut(s)	373
BstV1I	GCAGC	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	286, 635
BtrI	CACGTC	1 cut(s)	1363
BtsCI	GGATG	2 cut(s)	588, 673
BtsI	GCAGTG	1 cut(s)	1326
BtsIMutI	CAGTG	5 cut(s)	418, 477, 961, 1258, 1326
Cac8I	GCNNGC	2 cut(s)	363, 1126
Csp6I	GTAC	4 cut(s)	423, 738, 1060, 1085
CviAII	CATG	4 cut(s)	682, 808, 882, 1213
CviQI	GTAC	4 cut(s)	423, 738, 1060, 1085
DdeI	CTNAG	6 cut(s)	230, 1089, 1152, 1225, 1302, 1386
DpnI	GATC	6 cut(s)	88, 530, 960, 1032, 1194, 1275
DpnII	GATC	6 cut(s)	86, 528, 958, 1030, 1192, 1273
Eam1104I	CTCTTC	2 cut(s)	63, 622
EarI	CTCTTC	2 cut(s)	63, 622
Ecl136II	GAGCTC	2 cut(s)	239, 338
Eco147I	AGGCCT	1 cut(s)	286
Eco24I	GRGCYC	2 cut(s)	241, 340
Eco53kI	GAGCTC	2 cut(s)	239, 338
Eco57I	CTGAAG	3 cut(s)	310, 603, 964
Eco88I	CYCGRG	1 cut(s)	339
EcoICRI	GAGCTC	2 cut(s)	239, 338
EcoRII	CCWGG	3 cut(s)	487, 709, 835
EcoT38I	GRGCYC	2 cut(s)	241, 340
Esp3I	CGTCTC	1 cut(s)	1369
FaeI	CATG	4 cut(s)	685, 811, 885, 1216
FalI	AAGNNNNNCTT	6 cut(s)	153, 185, 779, 811, 1260, 1292
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	4 cut(s)	681, 807, 881, 1212
FauI	CCCGC	2 cut(s)	366, 1133
FbaI	TGATCA	1 cut(s)	958
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	2 cut(s)	575, 680
FriOI	GRGCYC	2 cut(s)	241, 340
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	3 cut(s)	132, 1028, 1329
GluI	GCNGC	1 cut(s)	165
GsuI	CTGGAG	3 cut(s)	225, 735, 1038
HaeIII	GGCC	2 cut(s)	286, 635
Hin1I	GRCGYC	1 cut(s)	889
Hin1II	CATG	4 cut(s)	685, 811, 885, 1216
HincII	GTYRAC	1 cut(s)	1133
HindII	GTYRAC	1 cut(s)	1133
HinfI	GANTC	3 cut(s)	194, 209, 1006
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	3 cut(s)	976, 1133, 1324
Hpy188I	TCNGA	4 cut(s)	72, 243, 329, 497
Hpy188III	TCNNGA	5 cut(s)	84, 299, 752, 1190, 1196
Hpy8I	GTNNAC	3 cut(s)	976, 1133, 1324
Hpy99I	CGWCG	1 cut(s)	919
HpyAV	CCTTC	4 cut(s)	425, 1088, 1210, 1226
HpyCH4III	ACNGT	4 cut(s)	422, 472, 650, 1262
HpyCH4IV	ACGT	6 cut(s)	290, 889, 914, 1083, 1135, 1362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	358, 1325
HpyF3I	CTNAG	6 cut(s)	230, 1089, 1152, 1225, 1302, 1386
HpySE526I	ACGT	6 cut(s)	290, 889, 914, 1083, 1135, 1362
Hsp92I	GRCGYC	1 cut(s)	889
Hsp92II	CATG	4 cut(s)	685, 811, 885, 1216
Ksp22I	TGATCA	1 cut(s)	958
Kzo9I	GATC	6 cut(s)	86, 528, 958, 1030, 1192, 1273
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	2 cut(s)	591, 856
MaeI	CTAG	3 cut(s)	132, 1028, 1329
MaeII	ACGT	6 cut(s)	290, 889, 914, 1083, 1135, 1362
MaeIII	GTNAC	6 cut(s)	39, 107, 343, 677, 994, 1308
MalI	GATC	6 cut(s)	88, 530, 960, 1032, 1194, 1275
MboI	GATC	6 cut(s)	86, 528, 958, 1030, 1192, 1273
MboII	GAAGA	4 cut(s)	27, 50, 609, 1268
MhlI	GDGCHC	2 cut(s)	241, 340
MluCI	AATT	7 cut(s)	532, 575, 755, 769, 777, 1182, 1392
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	7 cut(s)	351, 776, 1053, 1147, 1259, 1350, 1381
MseI	TTAA	7 cut(s)	260, 389, 797, 876, 924, 1296, 1396
MslI	CAYNNNNRTG	5 cut(s)	262, 434, 864, 905, 1211
MspA1I	CMGCKG	2 cut(s)	319, 1128
MspR9I	CCNGG	3 cut(s)	489, 711, 837
MvaI	CCWGG	3 cut(s)	489, 711, 837
MvnI	CGCG	1 cut(s)	373
MwoI	GCNNNNNNNGC	2 cut(s)	358, 1325
NdeII	GATC	6 cut(s)	86, 528, 958, 1030, 1192, 1273
NlaIII	CATG	4 cut(s)	685, 811, 885, 1216
NmuCI	GTSAC	1 cut(s)	39
NspI	RCATGY	3 cut(s)	685, 811, 885
PaeR7I	CTCGAG	1 cut(s)	339
PceI	AGGCCT	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	209, 1006
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Ppu21I	YACGTR	1 cut(s)	1084
PshBI	ATTAAT	2 cut(s)	260, 1296
Psp124BI	GAGCTC	2 cut(s)	241, 340
Psp6I	CCWGG	3 cut(s)	487, 709, 835
PspGI	CCWGG	3 cut(s)	487, 709, 835
PspXI	VCTCGAGB	1 cut(s)	339
PvuII	CAGCTG	1 cut(s)	319
RsaI	GTAC	4 cut(s)	424, 739, 1061, 1086
RsaNI	GTAC	4 cut(s)	423, 738, 1060, 1085
RseI	CAYNNNNRTG	5 cut(s)	262, 434, 864, 905, 1211
SacI	GAGCTC	2 cut(s)	241, 340
SaqAI	TTAA	7 cut(s)	260, 389, 797, 876, 924, 1296, 1396
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	6 cut(s)	86, 528, 958, 1030, 1192, 1273
ScaI	AGTACT	1 cut(s)	739
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	3 cut(s)	489, 711, 837
SduI	GDGCHC	2 cut(s)	241, 340
SfaNI	GCATC	2 cut(s)	591, 856
SfcI	CTRYAG	1 cut(s)	568
Sfr274I	CTCGAG	1 cut(s)	339
SlaI	CTCGAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	5 cut(s)	262, 434, 864, 905, 1211
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
Sse9I	AATT	7 cut(s)	532, 575, 755, 769, 777, 1182, 1392
SseBI	AGGCCT	1 cut(s)	286
SsiI	CCGC	2 cut(s)	373, 1126
SspMI	CTAG	3 cut(s)	132, 1028, 1329
SstI	GAGCTC	2 cut(s)	241, 340
StuI	AGGCCT	1 cut(s)	286
StyD4I	CCNGG	3 cut(s)	487, 709, 835
TaaI	ACNGT	4 cut(s)	422, 472, 650, 1262
TaiI	ACGT	6 cut(s)	293, 892, 917, 1086, 1138, 1365
TaqI	TCGA	4 cut(s)	298, 340, 917, 1113
TasI	AATT	7 cut(s)	532, 575, 755, 769, 777, 1182, 1392
TatI	WGTACW	2 cut(s)	422, 737
TfiI	GAWTC	2 cut(s)	209, 1006
Tru1I	TTAA	7 cut(s)	260, 389, 797, 876, 924, 1296, 1396
Tru9I	TTAA	7 cut(s)	260, 389, 797, 876, 924, 1296, 1396
TscAI	CASTG	5 cut(s)	425, 477, 968, 1265, 1326
TseFI	GTSAC	1 cut(s)	39
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	39
TspDTI	ATGAA	5 cut(s)	288, 632, 687, 1229, 1392
TspRI	CASTG	5 cut(s)	425, 477, 968, 1265, 1326
VspI	ATTAAT	2 cut(s)	260, 1296
XapI	RAATTY	3 cut(s)	575, 755, 1392
XceI	RCATGY	3 cut(s)	685, 811, 885
XhoI	CTCGAG	1 cut(s)	339
XspI	CTAG	3 cut(s)	132, 1028, 1329
ZraI	GACGTC	1 cut(s)	890
ZrmI	AGTACT	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.