Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Forward (+)

1031109 .. 1033707

Gene Structure 2599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAATAAGGAGTCTATTGACAGAGAGAAAATGGCCATGACCAATGTCCAAGAAATGTCTATGAATGGTGAGCAGCCACCTGCTGAATATATTGTTAAAGAAAGTAGGTTTGGATCCATAGATTCTTCTCCACCATTGGCTGATGAAATCCCCATCATTGATATCAGTCTCTTCTCCCCATCATCTCCTCAATATTCCGAACAAGCAGAAAATCATGAGCTACAGATACTCAGATCAGCACTCAGCTCGGCAGGATGCTTCCAGGCAATAGGCCATGGGATTTCGGATTCACTTCTTGACAAGGTACGTGAAGCAGCAAAACAATTCTTTGCACTTCCAGTAGAAGAGAAGGAAAAATACTCCCGCGCAGTTCATGGCGGAGCCGAAGGATATGGGAACGATGTCGTAGTATCGGAAAAGCAAGTTCTTGACTGGTCCTATCGTCTCACTCTCAGGGTCTTCCCAGAAAACCAAAAAAGGCTTCATCTTTGGCCTCAAAATCCAAATGATTTTGGAGAGATGTTACATGAATATGCAACGAAGGTAAAGTTGATGATGGGTATTGTGTTCAAGGCAATGGCAAAGTCGTTGAATTTGGAAGATAACAGCTTTGCAAAGCAGCTGTTTGGAGACCAATCCCTGATGCAAGCAAGGTTCAACTTCTATCCTCCGTGCTCGAGATCTGACCTCGTCCTCGGCGTCAAGCCTCACACGGATAGGTCCGGCGTGACATGTCTCTTACAAGACAAGGATGTGGAAGGCCTTCAAGTTTTGATAGATGAAAAATGGGTTAGAGTCCCCATTGTTCCTCATGCTATCGTTCTTAATCTTGGTGATCAGATGCAGATCATGAGTAATGGTATTTACAAGAGCCCCATGCACAGGGTGGTGACAAATGGAGAGATTATGAGGCTATCAGTTGCTTTGTTCAATGAACCCGATCCTGAAACCGAGATTGGTCCGGTCGAGGACTTGATCGACGAGACAAGGCCGAGATTGTACAAAAATGTCAAGAATTATGGTCGTATTAACTACGAATGCTATCAGAGAGGGGAAATTGCACTGGAAACAGTCAGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

361

Amino Acids

40.82

Weight (kDa)

5.26

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	50 - 167	8.1e-25	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	218 - 313	1.9e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	88
Acc36I	ACCTGC	1 cut(s)	88
AccII	CGCG	1 cut(s)	366
AciI	CCGC	2 cut(s)	364, 378
AclWI	GGATC	3 cut(s)	108, 121, 935
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	592
AcyI	GRCGYC	1 cut(s)	699
AdeI	CACNNNGTG	1 cut(s)	886
AfaI	GTAC	2 cut(s)	306, 1001
AfiI	CCNNNNNNNGG	1 cut(s)	882
AflIII	ACRYGT	1 cut(s)	731
AgsI	TTSAA	5 cut(s)	571, 592, 658, 767, 931
AjnI	CCWGG	1 cut(s)	261
AjuI	GAANNNNNNNTTGG	6 cut(s)	93, 125, 465, 497, 939, 971
AluBI	AGCT	4 cut(s)	220, 246, 609, 622
AluI	AGCT	4 cut(s)	220, 246, 609, 622
Alw21I	GWGCWC	1 cut(s)	677
Alw26I	GTCTC	5 cut(s)	173, 449, 624, 740, 977
AlwI	GGATC	3 cut(s)	108, 121, 935
Ama87I	CYCGRG	1 cut(s)	676
AoxI	GGCC	5 cut(s)	33, 271, 491, 760, 989
ApeKI	GCWGC	3 cut(s)	73, 314, 619
ApoI	RAATTY	1 cut(s)	592
Asp700I	GAANNNNTTC	1 cut(s)	762
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	3 cut(s)	435, 720, 959
AsuHPI	GGTGA	3 cut(s)	80, 845, 901
AvaI	CYCGRG	1 cut(s)	676
AvaII	GGWCC	3 cut(s)	435, 720, 959
BalI	TGGCCA	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	875
BarI	GAAGNNNNNNTAC	2 cut(s)	341, 373
BbsI	GAAGAC	1 cut(s)	451
Bbv12I	GWGCWC	1 cut(s)	677
BbvI	GCAGC	3 cut(s)	85, 326, 631
BccI	CCATC	3 cut(s)	161, 187, 550
BcgI	CGANNNNNNTGC	2 cut(s)	228, 262
BciT130I	CCWGG	1 cut(s)	263
BclI	TGATCA	1 cut(s)	835
BcoDI	GTCTC	5 cut(s)	173, 449, 624, 740, 977
BfmI	CTRYAG	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	88
BglII	AGATCT	1 cut(s)	680
BisI	GCNGC	3 cut(s)	74, 315, 620
BlsI	GCNGC	3 cut(s)	75, 316, 621
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	3 cut(s)	435, 720, 959
BmeT110I	CYCGRG	1 cut(s)	676
BmgT120I	GGNCC	3 cut(s)	435, 720, 959
BmiI	GGNNCC	2 cut(s)	115, 382
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	3 cut(s)	245, 633, 831
BoxI	GACNNNNGTC	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	451
BsaAI	YACGTR	1 cut(s)	308
BsaBI	GATNNNNATC	1 cut(s)	845
BsaHI	GRCGYC	1 cut(s)	699
BsaI	GGTCTC	1 cut(s)	624
BsaJI	CCNNGG	2 cut(s)	274, 694
BsaWI	WCCGGW	1 cut(s)	961
Bsc4I	CCNNNNNNNGG	1 cut(s)	882
Bse1I	ACTGG	3 cut(s)	338, 437, 1068
Bse3DI	GCAATG	1 cut(s)	582
Bse8I	GATNNNNATC	1 cut(s)	845
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	274, 694
BseGI	GGATG	2 cut(s)	260, 757
BseJI	GATNNNNATC	1 cut(s)	845
BseLI	CCNNNNNNNGG	1 cut(s)	882
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	3 cut(s)	244, 256, 466
BseNI	ACTGG	3 cut(s)	338, 437, 1068
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	3 cut(s)	85, 326, 631
Bsh1236I	CGCG	1 cut(s)	366
Bsh1285I	CGRYCG	1 cut(s)	966
BshFI	GGCC	5 cut(s)	35, 273, 493, 762, 991
BsiEI	CGRYCG	1 cut(s)	966
BsiHKAI	GWGCWC	1 cut(s)	677
BsiHKCI	CYCGRG	1 cut(s)	676
BsiSI	CCGG	2 cut(s)	723, 962
BslFI	GGGAC	1 cut(s)	782
BslI	CCNNNNNNNGG	1 cut(s)	882
BsmAI	GTCTC	5 cut(s)	173, 449, 624, 740, 977
BsmBI	CGTCTC	1 cut(s)	449
BsmFI	GGGAC	1 cut(s)	782
BsmI	GAATGC	1 cut(s)	1043
BsnI	GGCC	5 cut(s)	35, 273, 493, 762, 991
Bso31I	GGTCTC	1 cut(s)	624
BsoBI	CYCGRG	1 cut(s)	676
Bsp1286I	GDGCHC	2 cut(s)	677, 875
Bsp1407I	TGTACA	1 cut(s)	999
Bsp143I	GATC	7 cut(s)	113, 233, 680, 835, 846, 940, 975
Bsp19I	CCATGG	1 cut(s)	274
BspACI	CCGC	2 cut(s)	364, 378
BspANI	GGCC	5 cut(s)	35, 273, 493, 762, 991
BspCNI	CTCAG	3 cut(s)	243, 255, 465
BspFNI	CGCG	1 cut(s)	366
BspHI	TCATGA	2 cut(s)	214, 849
BspLI	GGNNCC	2 cut(s)	115, 382
BspMI	ACCTGC	1 cut(s)	88
BspPI	GGATC	3 cut(s)	108, 121, 935
BspTNI	GGTCTC	1 cut(s)	624
BsrDI	GCAATG	1 cut(s)	582
BsrGI	TGTACA	1 cut(s)	999
BsrI	ACTGG	3 cut(s)	338, 437, 1068
BssECI	CCNNGG	2 cut(s)	274, 694
BssMI	GATC	7 cut(s)	113, 233, 680, 835, 846, 940, 975
BssNI	GRCGYC	1 cut(s)	699
BssT1I	CCWWGG	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	1072
Bst6I	CTCTTC	2 cut(s)	176, 339
BstACI	GRCGYC	1 cut(s)	699
BstAUI	TGTACA	1 cut(s)	999
BstBAI	YACGTR	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	648
BstDEI	CTNAG	3 cut(s)	230, 242, 452
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	2 cut(s)	260, 757
BstFNI	CGCG	1 cut(s)	366
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	7 cut(s)	116, 236, 683, 838, 849, 943, 978
BstMAI	GTCTC	5 cut(s)	173, 449, 624, 740, 977
BstMBI	GATC	7 cut(s)	113, 233, 680, 835, 846, 940, 975
BstMCI	CGRYCG	1 cut(s)	966
BstNI	CCWGG	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	735
BstPAI	GACNNNNGTC	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	1 cut(s)	221
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	3 cut(s)	85, 326, 631
BstV2I	GAAGAC	1 cut(s)	451
BstX2I	RGATCY	2 cut(s)	113, 680
BstYI	RGATCY	2 cut(s)	113, 680
BsuRI	GGCC	5 cut(s)	35, 273, 493, 762, 991
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	260, 757
BtsIMutI	CAGTG	1 cut(s)	1061
BveI	ACCTGC	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	648
CciI	TCATGA	2 cut(s)	214, 849
CfoI	GCGC	1 cut(s)	368
Cfr13I	GGNCC	3 cut(s)	435, 720, 959
CseI	GACGC	1 cut(s)	688
Csp6I	GTAC	2 cut(s)	305, 1000
CviAII	CATG	9 cut(s)	37, 215, 275, 374, 527, 732, 812, 850, 877
CviQI	GTAC	2 cut(s)	305, 1000
DdeI	CTNAG	3 cut(s)	230, 242, 452
DpnI	GATC	7 cut(s)	115, 235, 682, 837, 848, 942, 977
DpnII	GATC	7 cut(s)	113, 233, 680, 835, 846, 940, 975
DraIII	CACNNNGTG	1 cut(s)	886
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	2 cut(s)	176, 339
EarI	CTCTTC	2 cut(s)	176, 339
EciI	GGCGGA	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	274
Eco147I	AGGCCT	1 cut(s)	762
Eco24I	GRGCYC	1 cut(s)	875
Eco31I	GGTCTC	1 cut(s)	624
Eco32I	GATATC	1 cut(s)	163
Eco47I	GGWCC	3 cut(s)	435, 720, 959
Eco88I	CYCGRG	1 cut(s)	676
EcoRII	CCWGG	1 cut(s)	261
EcoRV	GATATC	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	875
ErhI	CCWWGG	1 cut(s)	274
Esp3I	CGTCTC	1 cut(s)	449
FaeI	CATG	9 cut(s)	40, 218, 278, 377, 530, 735, 815, 853, 880
FaqI	GGGAC	1 cut(s)	782
FatI	CATG	9 cut(s)	36, 214, 274, 373, 526, 731, 811, 849, 876
FauI	CCCGC	1 cut(s)	371
FbaI	TGATCA	1 cut(s)	835
Fnu4HI	GCNGC	3 cut(s)	74, 315, 620
FokI	GGATG	2 cut(s)	267, 764
FriOI	GRGCYC	1 cut(s)	875
Fsp4HI	GCNGC	3 cut(s)	74, 315, 620
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	3 cut(s)	74, 315, 620
HaeIII	GGCC	5 cut(s)	35, 273, 493, 762, 991
HapII	CCGG	2 cut(s)	723, 962
HgaI	GACGC	1 cut(s)	688
HhaI	GCGC	1 cut(s)	368
Hin1I	GRCGYC	1 cut(s)	699
Hin1II	CATG	9 cut(s)	40, 218, 278, 377, 530, 735, 815, 853, 880
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HinfI	GANTC	5 cut(s)	11, 122, 287, 795, 1077
HpaII	CCGG	2 cut(s)	723, 962
HphI	GGTGA	3 cut(s)	80, 845, 901
Hpy188I	TCNGA	8 cut(s)	199, 233, 286, 415, 685, 840, 1047, 1076
Hpy188III	TCNNGA	7 cut(s)	215, 296, 428, 678, 850, 944, 1012
Hpy99I	CGWCG	1 cut(s)	983
HpyAV	CCTTC	5 cut(s)	343, 380, 535, 752, 773
HpyCH4III	ACNGT	1 cut(s)	1072
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	7 cut(s)	332, 536, 614, 646, 844, 880, 1061
HpyF3I	CTNAG	3 cut(s)	230, 242, 452
HpySE526I	ACGT	1 cut(s)	307
Hsp92I	GRCGYC	1 cut(s)	699
Hsp92II	CATG	9 cut(s)	40, 218, 278, 377, 530, 735, 815, 853, 880
HspAI	GCGC	1 cut(s)	366
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	7 cut(s)	113, 233, 680, 835, 846, 940, 975
LmnI	GCTCC	1 cut(s)	380
Lsp1109I	GCAGC	3 cut(s)	85, 326, 631
LweI	GCATC	3 cut(s)	245, 633, 831
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	3 cut(s)	522, 727, 889
MalI	GATC	7 cut(s)	115, 235, 682, 837, 848, 942, 977
MboI	GATC	7 cut(s)	113, 233, 680, 835, 846, 940, 975
MboII	GAAGA	5 cut(s)	117, 163, 356, 451, 611
MflI	RGATCY	2 cut(s)	113, 680
MhlI	GDGCHC	2 cut(s)	677, 875
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	4 cut(s)	323, 592, 1015, 1056
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	2 cut(s)	20, 804
Mox20I	TGGCCA	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	762
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	3 cut(s)	96, 825, 1029
MslI	CAYNNNNRTG	1 cut(s)	531
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	622
MspI	CCGG	2 cut(s)	723, 962
MspR9I	CCNGG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	1043
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	366
NcoI	CCATGG	1 cut(s)	274
NdeII	GATC	7 cut(s)	113, 233, 680, 835, 846, 940, 975
NlaIII	CATG	9 cut(s)	40, 218, 278, 377, 530, 735, 815, 853, 880
NlaIV	GGNNCC	2 cut(s)	115, 382
NmeAIII	GCCGAG	3 cut(s)	227, 675, 1017
NmuCI	GTSAC	2 cut(s)	727, 889
NspI	RCATGY	1 cut(s)	735
PaeR7I	CTCGAG	1 cut(s)	676
PagI	TCATGA	2 cut(s)	214, 849
PaqCI	CACCTGC	1 cut(s)	88
PceI	AGGCCT	1 cut(s)	762
PciI	ACATGT	1 cut(s)	731
PcsI	WCGNNNNNNNCGW	1 cut(s)	696
PctI	GAATGC	1 cut(s)	1043
PdmI	GAANNNNTTC	1 cut(s)	762
PfeI	GAWTC	3 cut(s)	122, 287, 1077
PflFI	GACNNNGTC	1 cut(s)	689
PkrI	GCNGC	3 cut(s)	75, 316, 621
PleI	GAGTC	2 cut(s)	19, 803
PpsI	GAGTC	2 cut(s)	19, 803
Ppu21I	YACGTR	1 cut(s)	308
PscI	ACATGT	1 cut(s)	731
PshAI	GACNNNNGTC	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	115, 382
PspPI	GGNCC	3 cut(s)	435, 720, 959
PsuI	RGATCY	2 cut(s)	113, 680
PsyI	GACNNNGTC	1 cut(s)	689
PvuII	CAGCTG	1 cut(s)	622
RsaI	GTAC	2 cut(s)	306, 1001
RsaNI	GTAC	2 cut(s)	305, 1000
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	3 cut(s)	96, 825, 1029
SatI	GCNGC	3 cut(s)	74, 315, 620
Sau3AI	GATC	7 cut(s)	113, 233, 680, 835, 846, 940, 975
Sau96I	GGNCC	3 cut(s)	435, 720, 959
SchI	GAGTC	2 cut(s)	20, 804
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	2 cut(s)	677, 875
SfaNI	GCATC	3 cut(s)	245, 633, 831
SfcI	CTRYAG	1 cut(s)	221
Sfr274I	CTCGAG	1 cut(s)	676
SinI	GGWCC	3 cut(s)	435, 720, 959
SlaI	CTCGAG	1 cut(s)	676
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	676
SmoI	CTYRAG	1 cut(s)	676
Sse9I	AATT	4 cut(s)	323, 592, 1015, 1056
SseBI	AGGCCT	1 cut(s)	762
SsiI	CCGC	2 cut(s)	364, 378
SspI	AATATT	1 cut(s)	194
StuI	AGGCCT	1 cut(s)	762
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	1 cut(s)	1072
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	3 cut(s)	677, 966, 978
TasI	AATT	4 cut(s)	323, 592, 1015, 1056
TatI	WGTACW	1 cut(s)	999
TfiI	GAWTC	3 cut(s)	122, 287, 1077
Tru1I	TTAA	3 cut(s)	96, 825, 1029
Tru9I	TTAA	3 cut(s)	96, 825, 1029
TscAI	CASTG	1 cut(s)	1068
TseFI	GTSAC	2 cut(s)	727, 889
TseI	GCWGC	3 cut(s)	73, 314, 619
Tsp45I	GTSAC	2 cut(s)	727, 889
TspDTI	ATGAA	8 cut(s)	17, 77, 159, 362, 473, 543, 795, 948
TspGWI	ACGGA	2 cut(s)	660, 728
TspRI	CASTG	1 cut(s)	1068
Tth111I	GACNNNGTC	1 cut(s)	689
VpaK11BI	GGWCC	3 cut(s)	435, 720, 959
XapI	RAATTY	1 cut(s)	592
XceI	RCATGY	1 cut(s)	735
XcmI	CCANNNNNNNNNTGG	1 cut(s)	883
XhoI	CTCGAG	1 cut(s)	676
XmnI	GAANNNNTTC	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.