Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Forward (+)

56265705 .. 56267642

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG365800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTATTACTATATCATAAGTAATATTTTATCTTTCTTTGTGCATTGTCTTAATTTGTTGCACTTGTTTTTCTCCTTTTTGGGTTTTCAGGTAATAGGTCATGGGATTTCAAGTTCCTTTTTGGACAAGGTACGCGAAGCTGCGAAACAATTCTTTGACCTTCCAGTGGAAGAGAAGCAAAGATACTCTAGAGAAATTTATGGTGGCCGTGAAGGATATGGGGAGGATGCCATTGTCTCAGAGAAGCAAATTCGCGATTGGTCCTACCGCCTAATTCTTCGTGTATTCCCTGAAGATCAAAGAAGGCTCAATCTCTGGCCAGAAAATCCAAATGATTTTGGAGAAGTTGTACATGATTATGCAACAAAGGTGAAGTTTATGATGGATGTTCTGTTTAAGGCCATGGCCATATCTTTGAATTTGCAAGAGAACAGCTTTTCGGATAAGCTGTTTGGAGAGCAAGCTCAGATGATAGCAAGATTCAACTTCTTTCCGCGGTGTTCAAGGCCTGATCAGGTGTTTGGTGTGAAGCCACATACAGATGGGACAGGATTAACTGTTCTGTTGCAGGACAAAGAAGTAGAGGGTCTTCAAGTTTTGGTGGATGGTAAATGGGTTAGAGTCCCCATTGTGACACATGCCATTTTTGTTAATCTTGGTGCTCAAATGCAAATTATGAGTAATGACATATTCAAGAGCCCACTGCACAGGGTGGTGACAAATCCAGAAAGAATGAGGCTATCTGTGGCCTTGCTTAATGTACCAGATCCTGAAACCGAGATTGGTCCAGTGGAGAAACTGATAGATGAGACAAGGCCAAGGATATACAAAAATGTCAAGAACTATTCCAGTATTAACTATAAGTGCTTTCAGAGAGGAGAAGTAGCACTTGAAACATTAAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

302

Amino Acids

35.01

Weight (kDa)

6.67

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	29 - 109	1.5e-16	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	158 - 251	1.2e-27	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	135, 255, 496
AciI	CCGC	3 cut(s)	268, 494, 496
AclWI	GGATC	1 cut(s)	761
AcoI	YGGCCR	3 cut(s)	205, 317, 405
AcsI	RAATTY	3 cut(s)	195, 249, 418
AcuI	CTGAAG	1 cut(s)	312
AdeI	CACNNNGTG	1 cut(s)	712
AfaI	GTAC	3 cut(s)	132, 351, 762
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	7 cut(s)	111, 418, 484, 504, 593, 694, 893
AjuI	GAANNNNNNNTTGG	2 cut(s)	765, 797
AloI	GAACNNNNNNTCC	4 cut(s)	97, 129, 543, 575
AluBI	AGCT	4 cut(s)	140, 435, 448, 464
AluI	AGCT	4 cut(s)	140, 435, 448, 464
Alw21I	GWGCWC	1 cut(s)	664
Alw26I	GTCTC	2 cut(s)	241, 803
AlwI	GGATC	1 cut(s)	761
AlwNI	CAGNNNCTG	1 cut(s)	770
AoxI	GGCC	7 cut(s)	205, 317, 399, 405, 506, 747, 815
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	3 cut(s)	195, 249, 418
Asp700I	GAANNNNTTC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	261, 785
AsuHPI	GGTGA	2 cut(s)	382, 727
AvaII	GGWCC	2 cut(s)	261, 785
BalI	TGGCCA	2 cut(s)	319, 407
BanII	GRGCYC	1 cut(s)	701
BarI	GAAGNNNNNNTAC	4 cut(s)	167, 199, 573, 605
BbsI	GAAGAC	1 cut(s)	581
Bbv12I	GWGCWC	1 cut(s)	664
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	3 cut(s)	376, 536, 599
BceAI	ACGGC	1 cut(s)	192
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	2 cut(s)	241, 803
BfaI	CTAG	1 cut(s)	189
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme18I	GGWCC	2 cut(s)	261, 785
BmgT120I	GGNCC	2 cut(s)	261, 785
BmsI	GCATC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	581
BsaJI	CCNNGG	3 cut(s)	402, 494, 818
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse1I	ACTGG	3 cut(s)	164, 788, 849
BseDI	CCNNGG	3 cut(s)	402, 494, 818
BseGI	GGATG	3 cut(s)	232, 391, 610
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	2 cut(s)	252, 479
BseNI	ACTGG	3 cut(s)	164, 788, 849
BseRI	GAGGAG	1 cut(s)	891
BseXI	GCAGC	1 cut(s)	127
BsgI	GTGCAG	1 cut(s)	689
Bsh1236I	CGCG	3 cut(s)	135, 255, 496
BshFI	GGCC	7 cut(s)	207, 319, 401, 407, 508, 749, 817
BsiHKAI	GWGCWC	1 cut(s)	664
BslFI	GGGAC	2 cut(s)	559, 608
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	2 cut(s)	241, 803
BsmFI	GGGAC	2 cut(s)	559, 608
BsnI	GGCC	7 cut(s)	207, 319, 401, 407, 508, 749, 817
Bsp1286I	GDGCHC	2 cut(s)	664, 701
Bsp1407I	TGTACA	1 cut(s)	349
Bsp143I	GATC	3 cut(s)	295, 511, 766
Bsp19I	CCATGG	1 cut(s)	402
Bsp68I	TCGCGA	1 cut(s)	255
BspACI	CCGC	3 cut(s)	268, 494, 496
BspANI	GGCC	7 cut(s)	207, 319, 401, 407, 508, 749, 817
BspCNI	CTCAG	2 cut(s)	251, 478
BspFNI	CGCG	3 cut(s)	135, 255, 496
BspPI	GGATC	1 cut(s)	761
BsrGI	TGTACA	1 cut(s)	349
BsrI	ACTGG	3 cut(s)	164, 788, 849
BssECI	CCNNGG	3 cut(s)	402, 494, 818
BssMI	GATC	3 cut(s)	295, 511, 766
BssT1I	CCWWGG	2 cut(s)	402, 818
Bst4CI	ACNGT	1 cut(s)	559
Bst6I	CTCTTC	1 cut(s)	165
BstAUI	TGTACA	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	2 cut(s)	238, 465
BstDSI	CCRYGG	2 cut(s)	402, 494
BstF5I	GGATG	3 cut(s)	232, 391, 610
BstFNI	CGCG	3 cut(s)	135, 255, 496
BstKTI	GATC	3 cut(s)	298, 514, 769
BstMAI	GTCTC	2 cut(s)	241, 803
BstMBI	GATC	3 cut(s)	295, 511, 766
BstNSI	RCATGY	1 cut(s)	641
BstUI	CGCG	3 cut(s)	135, 255, 496
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	581
BstX2I	RGATCY	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	766
BsuRI	GGCC	7 cut(s)	207, 319, 401, 407, 508, 749, 817
BtgI	CCRYGG	2 cut(s)	402, 494
BtsCI	GGATG	3 cut(s)	232, 391, 610
BtsI	GCAGTG	1 cut(s)	701
BtsIMutI	CAGTG	3 cut(s)	171, 701, 795
BtuMI	TCGCGA	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	462
CaiI	CAGNNNCTG	1 cut(s)	770
Cfr13I	GGNCC	2 cut(s)	261, 785
Cfr42I	CCGCGG	1 cut(s)	497
Csp6I	GTAC	3 cut(s)	131, 350, 761
CviAII	CATG	4 cut(s)	101, 353, 403, 638
CviQI	GTAC	3 cut(s)	131, 350, 761
DdeI	CTNAG	2 cut(s)	238, 465
DpnI	GATC	3 cut(s)	297, 513, 768
DpnII	GATC	3 cut(s)	295, 511, 766
DraIII	CACNNNGTG	1 cut(s)	712
EaeI	YGGCCR	3 cut(s)	205, 317, 405
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	402, 818
Eco147I	AGGCCT	1 cut(s)	508
Eco24I	GRGCYC	1 cut(s)	701
Eco47I	GGWCC	2 cut(s)	261, 785
Eco57I	CTGAAG	1 cut(s)	312
EcoT14I	CCWWGG	2 cut(s)	402, 818
EcoT38I	GRGCYC	1 cut(s)	701
ErhI	CCWWGG	2 cut(s)	402, 818
FaeI	CATG	4 cut(s)	104, 356, 406, 641
FalI	AAGNNNNNCTT	2 cut(s)	873, 905
FaqI	GGGAC	2 cut(s)	559, 608
FatI	CATG	4 cut(s)	100, 352, 402, 637
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	3 cut(s)	239, 398, 617
FriOI	GRGCYC	1 cut(s)	701
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	1 cut(s)	141
HaeIII	GGCC	7 cut(s)	207, 319, 401, 407, 508, 749, 817
Hin1II	CATG	4 cut(s)	104, 356, 406, 641
HinfI	GANTC	2 cut(s)	480, 621
HphI	GGTGA	2 cut(s)	382, 727
Hpy188I	TCNGA	4 cut(s)	241, 442, 468, 873
Hpy188III	TCNNGA	6 cut(s)	189, 254, 694, 725, 770, 838
HpyAV	CCTTC	3 cut(s)	170, 206, 297
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4V	TGCA	7 cut(s)	43, 61, 362, 424, 568, 670, 706
HpyF3I	CTNAG	2 cut(s)	238, 465
Hsp92II	CATG	4 cut(s)	104, 356, 406, 641
Ksp22I	TGATCA	1 cut(s)	511
KspI	CCGCGG	1 cut(s)	497
Kzo9I	GATC	3 cut(s)	295, 511, 766
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	631, 715
MalI	GATC	3 cut(s)	297, 513, 768
MboI	GATC	3 cut(s)	295, 511, 766
MboII	GAAGA	4 cut(s)	182, 269, 305, 581
MflI	RGATCY	1 cut(s)	766
MhlI	GDGCHC	2 cut(s)	664, 701
MlsI	TGGCCA	2 cut(s)	319, 407
MluCI	AATT	7 cut(s)	52, 149, 195, 249, 273, 418, 672
MluNI	TGGCCA	2 cut(s)	319, 407
MlyI	GAGTC	1 cut(s)	630
MnlI	CCTC	4 cut(s)	217, 577, 729, 869
Mox20I	TGGCCA	2 cut(s)	319, 407
MroXI	GAANNNNTTC	1 cut(s)	149
MscI	TGGCCA	2 cut(s)	319, 407
MseI	TTAA	7 cut(s)	51, 396, 554, 651, 756, 855, 899
MslI	CAYNNNNRTG	2 cut(s)	357, 540
Msp20I	TGGCCA	2 cut(s)	319, 407
MspA1I	CMGCKG	1 cut(s)	496
MvnI	CGCG	3 cut(s)	135, 255, 496
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	3 cut(s)	295, 511, 766
NlaIII	CATG	4 cut(s)	104, 356, 406, 641
NmuCI	GTSAC	2 cut(s)	631, 715
NruI	TCGCGA	1 cut(s)	255
NspI	RCATGY	1 cut(s)	641
PceI	AGGCCT	1 cut(s)	508
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	480
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	1 cut(s)	629
PpsI	GAGTC	1 cut(s)	629
PspPI	GGNCC	2 cut(s)	261, 785
PstNI	CAGNNNCTG	1 cut(s)	770
PsuI	RGATCY	1 cut(s)	766
RruI	TCGCGA	1 cut(s)	255
RsaI	GTAC	3 cut(s)	132, 351, 762
RsaNI	GTAC	3 cut(s)	131, 350, 761
RseI	CAYNNNNRTG	2 cut(s)	357, 540
SacII	CCGCGG	1 cut(s)	497
SaqAI	TTAA	7 cut(s)	51, 396, 554, 651, 756, 855, 899
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	3 cut(s)	295, 511, 766
Sau96I	GGNCC	2 cut(s)	261, 785
SchI	GAGTC	1 cut(s)	630
SduI	GDGCHC	2 cut(s)	664, 701
SfaNI	GCATC	1 cut(s)	217
Sfr303I	CCGCGG	1 cut(s)	497
SgrBI	CCGCGG	1 cut(s)	497
SinI	GGWCC	2 cut(s)	261, 785
SmiMI	CAYNNNNRTG	2 cut(s)	357, 540
Sse9I	AATT	7 cut(s)	52, 149, 195, 249, 273, 418, 672
SseBI	AGGCCT	1 cut(s)	508
SsiI	CCGC	3 cut(s)	268, 494, 496
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	1 cut(s)	189
StuI	AGGCCT	1 cut(s)	508
StyI	CCWWGG	2 cut(s)	402, 818
TaaI	ACNGT	1 cut(s)	559
TasI	AATT	7 cut(s)	52, 149, 195, 249, 273, 418, 672
TatI	WGTACW	1 cut(s)	349
TfiI	GAWTC	1 cut(s)	480
Tru1I	TTAA	7 cut(s)	51, 396, 554, 651, 756, 855, 899
Tru9I	TTAA	7 cut(s)	51, 396, 554, 651, 756, 855, 899
TscAI	CASTG	3 cut(s)	171, 708, 795
TseFI	GTSAC	2 cut(s)	631, 715
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	2 cut(s)	631, 715
TspRI	CASTG	3 cut(s)	171, 708, 795
VpaK11BI	GGWCC	2 cut(s)	261, 785
XapI	RAATTY	3 cut(s)	195, 249, 418
XbaI	TCTAGA	1 cut(s)	188
XceI	RCATGY	1 cut(s)	641
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.