Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011562.1

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Reverse (-)

458 .. 1951

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011562.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

atgagtgtccaagagatgagcatcaaaggtgaggaacctccccctcagtatattgttaaagaaagcaagtttggagctatagagtcttccccagaattgggtcaaatccccatcattgatgtcagtctcttctccccatcatcaattgattctaaccaagcgaagttcgaactagacaaacttagaacagctctcagatcatcaggctgcatccaggtacgcgaagttgcgacgcaattctttgaactcccagtggaagagaaggaaaagtactccagagctgttcatggtggctctgaagggtatgggaatgatgtcattgtttcagagaagcaggttcttgattggtcctatcgcctaacacttcgagtatttcctgaagatcaaagaaggcttaacctttggccagaaaatccaaatgattttggagaggttgtacatgaatatgcaacaaaggtaaagttcatgatgggggttctttttaaggccatggcaaaatcgttgaatttggaagagaacagcttttcagataagctgcttggagagagagctctgatgcaagcaagattcaacttctatccgcggtgttcaagatgcgatcaggttcttggtgtgaagccacatacggataggtcaggagtgacagttttgttgcaagacaaagaagttgaaggtcttcaagttttggtagatggcaaatgggttagagtccccatcgtgcctcatgctatagttgttaatcttggtgatcaaatgcagattatgagtaatggtgtgttcaagagcccaatgcacagggtggtgacaaatccagaaaggatgaggctatctgtggccttgtttaatgaaccagatcctgaaactgagattagtccagtggagaaactgatagatgagacaaggccaagagtatacaaaaatgtcaagaattatggtcgcatcaactacgaatgctatcagagaggagaaatagcactcgaaacagtgaagatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

331

Amino Acids

37.73

Weight (kDa)

5.74

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	912
AccII	CGCG	2 cut(s)	222, 583
AciI	CCGC	2 cut(s)	581, 583
AclWI	GGATC	1 cut(s)	848
AcoI	YGGCCR	1 cut(s)	404
AcsI	RAATTY	1 cut(s)	505
AcuI	CTGAAG	2 cut(s)	318, 399
AdeI	CACNNNGTG	1 cut(s)	799
AfaI	GTAC	3 cut(s)	219, 272, 438
AfiI	CCNNNNNNNGG	2 cut(s)	97, 98
AgsI	TTSAA	7 cut(s)	245, 505, 571, 591, 671, 680, 781
AjnI	CCWGG	1 cut(s)	213
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AluBI	AGCT	6 cut(s)	77, 191, 281, 522, 535, 551
AluI	AGCT	6 cut(s)	77, 191, 281, 522, 535, 551
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	2 cut(s)	131, 890
AlwI	GGATC	1 cut(s)	848
AlwNI	CAGNNNCTG	1 cut(s)	857
AoxI	GGCC	4 cut(s)	404, 486, 834, 902
ApeKI	GCWGC	2 cut(s)	207, 535
ApoI	RAATTY	1 cut(s)	505
Asp700I	GAANNNNTTC	1 cut(s)	675
AspS9I	GGNCC	1 cut(s)	348
AsuHPI	GGTGA	3 cut(s)	41, 758, 814
AsuII	TTCGAA	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	348
BalI	TGGCCA	1 cut(s)	406
BanII	GRGCYC	2 cut(s)	553, 788
BarI	GAAGNNNNNNTAC	2 cut(s)	254, 286
BbsI	GAAGAC	2 cut(s)	78, 668
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	2 cut(s)	194, 522
BccI	CCATC	5 cut(s)	119, 145, 463, 686, 722
BciT130I	CCWGG	1 cut(s)	215
BclI	TGATCA	1 cut(s)	748
BcoDI	GTCTC	2 cut(s)	131, 890
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	2 cut(s)	78, 729
BfuAI	ACCTGC	1 cut(s)	325
BglII	AGATCT	1 cut(s)	990
BisI	GCNGC	2 cut(s)	208, 536
BlsI	GCNGC	2 cut(s)	209, 537
BmcAI	AGTACT	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	348
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	215
BmrI	ACTGGG	1 cut(s)	245
BmsI	GCATC	5 cut(s)	30, 219, 546, 584, 948
BmuI	ACTGGG	1 cut(s)	245
BpiI	GAAGAC	2 cut(s)	78, 668
BpmI	CTGGAG	1 cut(s)	259
Bpu14I	TTCGAA	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	489, 581
BsaXI	ACNNNNNCTCC	4 cut(s)	420, 450, 630, 660
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 98
Bse1I	ACTGG	2 cut(s)	251, 875
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	2 cut(s)	489, 581
BseGI	GGATG	2 cut(s)	210, 825
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	97, 98
BseMII	CTCAG	3 cut(s)	59, 208, 855
BseNI	ACTGG	2 cut(s)	251, 875
BseRI	GAGGAG	1 cut(s)	978
BseXI	GCAGC	2 cut(s)	194, 522
Bsh1236I	CGCG	2 cut(s)	222, 583
BshFI	GGCC	4 cut(s)	406, 488, 836, 904
BsiHKAI	GWGCWC	1 cut(s)	553
BslFI	GGGAC	1 cut(s)	695
BslI	CCNNNNNNNGG	2 cut(s)	97, 98
BsmAI	GTCTC	2 cut(s)	131, 890
BsmFI	GGGAC	1 cut(s)	695
BsmI	GAATGC	1 cut(s)	956
BsnI	GGCC	4 cut(s)	406, 488, 836, 904
Bsp119I	TTCGAA	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	553, 788
Bsp1407I	TGTACA	1 cut(s)	436
Bsp143I	GATC	6 cut(s)	197, 382, 598, 748, 853, 990
Bsp19I	CCATGG	1 cut(s)	489
BspACI	CCGC	2 cut(s)	581, 583
BspANI	GGCC	4 cut(s)	406, 488, 836, 904
BspCNI	CTCAG	3 cut(s)	58, 207, 856
BspFNI	CGCG	2 cut(s)	222, 583
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	1 cut(s)	36
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	1 cut(s)	848
BspT104I	TTCGAA	1 cut(s)	168
BsrGI	TGTACA	1 cut(s)	436
BsrI	ACTGG	2 cut(s)	251, 875
BssECI	CCNNGG	2 cut(s)	489, 581
BssMI	GATC	6 cut(s)	197, 382, 598, 748, 853, 990
BssNAI	GTATAC	1 cut(s)	913
BssT1I	CCWWGG	1 cut(s)	489
Bst1107I	GTATAC	1 cut(s)	913
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	646, 985
Bst6I	CTCTTC	3 cut(s)	134, 252, 507
BstAUI	TGTACA	1 cut(s)	436
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	4 cut(s)	45, 182, 194, 864
BstDSI	CCRYGG	2 cut(s)	489, 581
BstF5I	GGATG	2 cut(s)	210, 825
BstFNI	CGCG	2 cut(s)	222, 583
BstKTI	GATC	6 cut(s)	200, 385, 601, 751, 856, 993
BstMAI	GTCTC	2 cut(s)	131, 890
BstMBI	GATC	6 cut(s)	197, 382, 598, 748, 853, 990
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	213
BstSFI	CTRYAG	2 cut(s)	78, 729
BstUI	CGCG	2 cut(s)	222, 583
BstV1I	GCAGC	2 cut(s)	194, 522
BstV2I	GAAGAC	2 cut(s)	78, 668
BstX2I	RGATCY	2 cut(s)	853, 990
BstYI	RGATCY	2 cut(s)	853, 990
BstZ17I	GTATAC	1 cut(s)	913
BsuRI	GGCC	4 cut(s)	406, 488, 836, 904
BtgI	CCRYGG	2 cut(s)	489, 581
BtsCI	GGATG	2 cut(s)	210, 825
BtsIMutI	CAGTG	3 cut(s)	258, 882, 990
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	561
CaiI	CAGNNNCTG	1 cut(s)	857
CciI	TCATGA	1 cut(s)	465
Cfr13I	GGNCC	1 cut(s)	348
Cfr42I	CCGCGG	1 cut(s)	584
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	3 cut(s)	218, 271, 437
CviAII	CATG	5 cut(s)	287, 440, 466, 490, 725
CviQI	GTAC	3 cut(s)	218, 271, 437
DdeI	CTNAG	4 cut(s)	45, 182, 194, 864
DpnI	GATC	6 cut(s)	199, 384, 600, 750, 855, 992
DpnII	GATC	6 cut(s)	197, 382, 598, 748, 853, 990
DraIII	CACNNNGTG	1 cut(s)	799
EaeI	YGGCCR	1 cut(s)	404
Eam1104I	CTCTTC	3 cut(s)	134, 252, 507
EarI	CTCTTC	3 cut(s)	134, 252, 507
Ecl136II	GAGCTC	1 cut(s)	551
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	2 cut(s)	553, 788
Eco47I	GGWCC	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	551
Eco57I	CTGAAG	2 cut(s)	318, 399
EcoICRI	GAGCTC	1 cut(s)	551
EcoRII	CCWGG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	489
EcoT38I	GRGCYC	2 cut(s)	553, 788
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	5 cut(s)	290, 443, 469, 493, 728
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	5 cut(s)	286, 439, 465, 489, 724
FbaI	TGATCA	1 cut(s)	748
FblI	GTMKAC	1 cut(s)	912
Fnu4HI	GCNGC	2 cut(s)	208, 536
FokI	GGATG	2 cut(s)	197, 832
FriOI	GRGCYC	2 cut(s)	553, 788
Fsp4HI	GCNGC	2 cut(s)	208, 536
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	2 cut(s)	208, 536
GsuI	CTGGAG	1 cut(s)	259
HaeIII	GGCC	4 cut(s)	406, 488, 836, 904
HgaI	GACGC	1 cut(s)	241
Hin1II	CATG	5 cut(s)	290, 443, 469, 493, 728
HinfI	GANTC	4 cut(s)	83, 149, 567, 708
HphI	GGTGA	3 cut(s)	41, 758, 814
Hpy166II	GTNNAC	1 cut(s)	913
Hpy188I	TCNGA	6 cut(s)	197, 298, 328, 529, 555, 960
Hpy8I	GTNNAC	1 cut(s)	913
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	4 cut(s)	256, 293, 384, 665
HpyCH4III	ACNGT	2 cut(s)	646, 985
HpyCH4V	TGCA	6 cut(s)	210, 449, 559, 655, 757, 793
HpyF3I	CTNAG	4 cut(s)	45, 182, 194, 864
Hsp92II	CATG	5 cut(s)	290, 443, 469, 493, 728
Ksp22I	TGATCA	1 cut(s)	748
KspI	CCGCGG	1 cut(s)	584
Kzo9I	GATC	6 cut(s)	197, 382, 598, 748, 853, 990
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	2 cut(s)	194, 522
LweI	GCATC	5 cut(s)	30, 219, 546, 584, 948
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	640, 802
MalI	GATC	6 cut(s)	199, 384, 600, 750, 855, 992
MboI	GATC	6 cut(s)	197, 382, 598, 748, 853, 990
MboII	GAAGA	6 cut(s)	78, 121, 269, 392, 524, 668
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	2 cut(s)	853, 990
MhlI	GDGCHC	2 cut(s)	553, 788
MlsI	TGGCCA	1 cut(s)	406
MluCI	AATT	5 cut(s)	95, 144, 236, 505, 928
MluNI	TGGCCA	1 cut(s)	406
MlyI	GAGTC	2 cut(s)	92, 717
MnlI	CCTC	7 cut(s)	25, 48, 54, 424, 732, 816, 956
Mox20I	TGGCCA	1 cut(s)	406
MroXI	GAANNNNTTC	1 cut(s)	675
MscI	TGGCCA	1 cut(s)	406
MseI	TTAA	5 cut(s)	57, 396, 483, 738, 843
MslI	CAYNNNNRTG	1 cut(s)	444
Msp20I	TGGCCA	1 cut(s)	406
MspA1I	CMGCKG	1 cut(s)	583
MspR9I	CCNGG	1 cut(s)	215
MunI	CAATTG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	956
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	2 cut(s)	222, 583
NcoI	CCATGG	1 cut(s)	489
NdeII	GATC	6 cut(s)	197, 382, 598, 748, 853, 990
NlaIII	CATG	5 cut(s)	290, 443, 469, 493, 728
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	2 cut(s)	640, 802
NspV	TTCGAA	1 cut(s)	168
PagI	TCATGA	1 cut(s)	465
PctI	GAATGC	1 cut(s)	956
PdmI	GAANNNNTTC	1 cut(s)	675
PfeI	GAWTC	2 cut(s)	149, 567
PkrI	GCNGC	2 cut(s)	209, 537
PleI	GAGTC	2 cut(s)	91, 716
PpsI	GAGTC	2 cut(s)	91, 716
Psp124BI	GAGCTC	1 cut(s)	553
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	348
PstNI	CAGNNNCTG	1 cut(s)	857
PsuI	RGATCY	2 cut(s)	853, 990
RsaI	GTAC	3 cut(s)	219, 272, 438
RsaNI	GTAC	3 cut(s)	218, 271, 437
RseI	CAYNNNNRTG	1 cut(s)	444
SacI	GAGCTC	1 cut(s)	553
SacII	CCGCGG	1 cut(s)	584
SaqAI	TTAA	5 cut(s)	57, 396, 483, 738, 843
SatI	GCNGC	2 cut(s)	208, 536
Sau3AI	GATC	6 cut(s)	197, 382, 598, 748, 853, 990
Sau96I	GGNCC	1 cut(s)	348
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	2 cut(s)	92, 717
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	2 cut(s)	553, 788
SfaNI	GCATC	5 cut(s)	30, 219, 546, 584, 948
SfcI	CTRYAG	2 cut(s)	78, 729
Sfr303I	CCGCGG	1 cut(s)	584
SfuI	TTCGAA	1 cut(s)	168
SgrBI	CCGCGG	1 cut(s)	584
SinI	GGWCC	1 cut(s)	348
SmiMI	CAYNNNNRTG	1 cut(s)	444
Sse9I	AATT	5 cut(s)	95, 144, 236, 505, 928
SsiI	CCGC	2 cut(s)	581, 583
SspMI	CTAG	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	553
StyD4I	CCNGG	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	2 cut(s)	646, 985
TaqI	TCGA	3 cut(s)	168, 367, 978
TasI	AATT	5 cut(s)	95, 144, 236, 505, 928
TatI	WGTACW	2 cut(s)	270, 436
TfiI	GAWTC	2 cut(s)	149, 567
Tru1I	TTAA	5 cut(s)	57, 396, 483, 738, 843
Tru9I	TTAA	5 cut(s)	57, 396, 483, 738, 843
TscAI	CASTG	3 cut(s)	258, 882, 990
TseFI	GTSAC	2 cut(s)	640, 802
TseI	GCWGC	2 cut(s)	207, 535
Tsp45I	GTSAC	2 cut(s)	640, 802
TspDTI	ATGAA	4 cut(s)	275, 454, 456, 861
TspGWI	ACGGA	1 cut(s)	641
TspRI	CASTG	3 cut(s)	258, 882, 990
VpaK11BI	GGWCC	1 cut(s)	348
XapI	RAATTY	1 cut(s)	505
XmiI	GTMKAC	1 cut(s)	912
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	1 cut(s)	173
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.