Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Forward (+)

1873992 .. 1875368

Gene Structure 1377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG026500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAGTGTCCAAGAGATGAGCATCAAAGGTGAGGAACCTCCCCCTCAGTATATTGTTAAAGAAAGCAAGTTTGGAGCTATAGAGTCTTCCCCAGAATTGGGTCAAATCCCCATCATTGATGTCAGTCTCCTCTCCCCATCATCAATTGATTCTAACCAAGCGAAGTTCGAACTAGACAAACTTAGAACAGCTCTCAGCTCATCAGGCTGCATCCAGGCGGTTGGTCATGGGATATCAAGTTCCTTTCTGGACAAGGTACGCGAAGCTGCGACGCAATTCTTTGAACTCCCAGTGGAAGACAAGGAAAAGTACTCCAGAGCTGTTCATGGTGGCTCTGAAGGGTATGGGAATGATGTCATTGTTTCAGAGAAGCAAGTTCTTGATTGGTCCTATCGCCTAACACTTCGAGTATTTCCTGAAGATCAAAGAAGGCTTAACCTTTGGCCAGAAAATCCAAATGATTTTGGAGAGGTTGTACATGAATATGCAACAAAGGTAAAGTTCATGATGGGGGTTCTGTTTAAGGCCATGGCGAAATCGTTGAATTTGGAAGAGAACAGCTTTTCAGATAAGCTGCTTGGAGAGAGAGCTCTGATGCAAGCAAGATTCAACTTCTATCCACCGTGTGCAAGATCCGATAAAGTTCTTGGTGTGAAGCCACATACAGATAGGTCAGGAGTGACAGTTTTGTTGCAAGACAAAGAAGTTGAAGGTCTTCAAGTTTTGGTAGATGGCAAATGGGTTAGAGTCCCCATTGTGCCTCATGCTATAGTTGTTAACCTTGGTGATCAGATGCAGATTATGAGTAATGGTATATTCAAGAGCCCAATGCACAGGGTTGTGACAAATCCAGAAAGGATGAGGCTATCTGTGGCCTTGTTTAATGAACCAGATCCTGAAACTGAGATTAGTCCAGTGGAGAAACTGATAGATGAGACAAGGCCGAGAGTATACAAAAATGTCAAGAATTATGGTCGCATCAACTACGAATGCTATCAGAGAGGAGAAATAGCACTCGAAACAGTGAAGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

344

Amino Acids

38.81

Weight (kDa)

5.69

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	36 - 151	6.2e-23	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	202 - 297	1.7e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	951
AccII	CGCG	1 cut(s)	261
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	2 cut(s)	627, 887
AcoI	YGGCCR	1 cut(s)	443
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	2 cut(s)	357, 438
AdeI	CACNNNGTG	1 cut(s)	626
AfaI	GTAC	3 cut(s)	258, 311, 477
AfiI	CCNNNNNNNGG	2 cut(s)	97, 98
AgsI	TTSAA	6 cut(s)	284, 544, 610, 710, 719, 820
AjnI	CCWGG	1 cut(s)	213
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AloI	GAACNNNNNNTCC	2 cut(s)	223, 255
AluBI	AGCT	8 cut(s)	77, 191, 198, 266, 320, 561, 574, 590
AluI	AGCT	8 cut(s)	77, 191, 198, 266, 320, 561, 574, 590
Alw21I	GWGCWC	1 cut(s)	592
Alw26I	GTCTC	2 cut(s)	131, 929
AlwI	GGATC	2 cut(s)	627, 887
AlwNI	CAGNNNCTG	1 cut(s)	896
AoxI	GGCC	4 cut(s)	443, 525, 873, 941
ApeKI	GCWGC	3 cut(s)	207, 266, 574
ApoI	RAATTY	1 cut(s)	544
Asp700I	GAANNNNTTC	1 cut(s)	714
AspS9I	GGNCC	1 cut(s)	387
AsuHPI	GGTGA	2 cut(s)	41, 797
AsuII	TTCGAA	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	387
BalI	TGGCCA	1 cut(s)	445
BanII	GRGCYC	2 cut(s)	592, 827
BbsI	GAAGAC	3 cut(s)	78, 303, 707
Bbv12I	GWGCWC	1 cut(s)	592
BbvI	GCAGC	3 cut(s)	194, 253, 561
BccI	CCATC	4 cut(s)	119, 145, 502, 725
BciT130I	CCWGG	1 cut(s)	215
BclI	TGATCA	1 cut(s)	787
BcoDI	GTCTC	2 cut(s)	131, 929
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	2 cut(s)	78, 768
BglII	AGATCT	1 cut(s)	1029
BisI	GCNGC	3 cut(s)	208, 267, 575
BlsI	GCNGC	3 cut(s)	209, 268, 576
BmcAI	AGTACT	1 cut(s)	311
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	387
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	215
BmrI	ACTGGG	1 cut(s)	284
BmsI	GCATC	5 cut(s)	30, 219, 585, 783, 987
BmuI	ACTGGG	1 cut(s)	284
BpiI	GAAGAC	3 cut(s)	78, 303, 707
BpmI	CTGGAG	1 cut(s)	298
Bpu14I	TTCGAA	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	528, 781
BsaXI	ACNNNNNCTCC	4 cut(s)	459, 489, 669, 699
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 98
Bse1I	ACTGG	2 cut(s)	290, 914
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	2 cut(s)	528, 781
BseGI	GGATG	2 cut(s)	210, 864
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	97, 98
BseMII	CTCAG	3 cut(s)	59, 208, 894
BseNI	ACTGG	2 cut(s)	290, 914
BseRI	GAGGAG	2 cut(s)	119, 1017
BseXI	GCAGC	3 cut(s)	194, 253, 561
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	4 cut(s)	445, 527, 875, 943
BsiHKAI	GWGCWC	1 cut(s)	592
BslFI	GGGAC	1 cut(s)	734
BslI	CCNNNNNNNGG	2 cut(s)	97, 98
BsmAI	GTCTC	2 cut(s)	131, 929
BsmFI	GGGAC	1 cut(s)	734
BsmI	GAATGC	1 cut(s)	995
BsnI	GGCC	4 cut(s)	445, 527, 875, 943
Bsp119I	TTCGAA	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	592, 827
Bsp1407I	TGTACA	1 cut(s)	475
Bsp143I	GATC	5 cut(s)	421, 632, 787, 892, 1029
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	4 cut(s)	445, 527, 875, 943
BspCNI	CTCAG	3 cut(s)	58, 207, 895
BspFNI	CGCG	1 cut(s)	261
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	1 cut(s)	36
BspPI	GGATC	2 cut(s)	627, 887
BspT104I	TTCGAA	1 cut(s)	168
BsrGI	TGTACA	1 cut(s)	475
BsrI	ACTGG	2 cut(s)	290, 914
BssECI	CCNNGG	2 cut(s)	528, 781
BssMI	GATC	5 cut(s)	421, 632, 787, 892, 1029
BssNAI	GTATAC	1 cut(s)	952
BssT1I	CCWWGG	2 cut(s)	528, 781
Bst1107I	GTATAC	1 cut(s)	952
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	3 cut(s)	624, 685, 1024
Bst6I	CTCTTC	1 cut(s)	546
BstAUI	TGTACA	1 cut(s)	475
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	4 cut(s)	45, 182, 194, 903
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	2 cut(s)	210, 864
BstFNI	CGCG	1 cut(s)	261
BstKTI	GATC	5 cut(s)	424, 635, 790, 895, 1032
BstMAI	GTCTC	2 cut(s)	131, 929
BstMBI	GATC	5 cut(s)	421, 632, 787, 892, 1029
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	213
BstSFI	CTRYAG	2 cut(s)	78, 768
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	3 cut(s)	194, 253, 561
BstV2I	GAAGAC	3 cut(s)	78, 303, 707
BstX2I	RGATCY	3 cut(s)	632, 892, 1029
BstXI	CCANNNNNNTGG	1 cut(s)	221
BstYI	RGATCY	3 cut(s)	632, 892, 1029
BstZ17I	GTATAC	1 cut(s)	952
BsuRI	GGCC	4 cut(s)	445, 527, 875, 943
BtgI	CCRYGG	1 cut(s)	528
BtsCI	GGATG	2 cut(s)	210, 864
BtsIMutI	CAGTG	3 cut(s)	297, 921, 1029
Cac8I	GCNNGC	1 cut(s)	600
CaiI	CAGNNNCTG	1 cut(s)	896
CciI	TCATGA	1 cut(s)	504
Cfr13I	GGNCC	1 cut(s)	387
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	3 cut(s)	257, 310, 476
CviAII	CATG	6 cut(s)	227, 326, 479, 505, 529, 764
CviQI	GTAC	3 cut(s)	257, 310, 476
DdeI	CTNAG	4 cut(s)	45, 182, 194, 903
DpnI	GATC	5 cut(s)	423, 634, 789, 894, 1031
DpnII	GATC	5 cut(s)	421, 632, 787, 892, 1029
DraIII	CACNNNGTG	1 cut(s)	626
EaeI	YGGCCR	1 cut(s)	443
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Ecl136II	GAGCTC	1 cut(s)	590
Eco130I	CCWWGG	2 cut(s)	528, 781
Eco24I	GRGCYC	2 cut(s)	592, 827
Eco32I	GATATC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	387
Eco53kI	GAGCTC	1 cut(s)	590
Eco57I	CTGAAG	2 cut(s)	357, 438
EcoICRI	GAGCTC	1 cut(s)	590
EcoRII	CCWGG	1 cut(s)	213
EcoRV	GATATC	1 cut(s)	234
EcoT14I	CCWWGG	2 cut(s)	528, 781
EcoT38I	GRGCYC	2 cut(s)	592, 827
ErhI	CCWWGG	2 cut(s)	528, 781
FaeI	CATG	6 cut(s)	230, 329, 482, 508, 532, 767
FaqI	GGGAC	1 cut(s)	734
FatI	CATG	6 cut(s)	226, 325, 478, 504, 528, 763
FbaI	TGATCA	1 cut(s)	787
FblI	GTMKAC	1 cut(s)	951
Fnu4HI	GCNGC	3 cut(s)	208, 267, 575
FokI	GGATG	2 cut(s)	197, 871
FriOI	GRGCYC	2 cut(s)	592, 827
Fsp4HI	GCNGC	3 cut(s)	208, 267, 575
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	3 cut(s)	208, 267, 575
GsuI	CTGGAG	1 cut(s)	298
HaeIII	GGCC	4 cut(s)	445, 527, 875, 943
HgaI	GACGC	1 cut(s)	280
Hin1II	CATG	6 cut(s)	230, 329, 482, 508, 532, 767
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HinfI	GANTC	4 cut(s)	83, 149, 606, 747
HpaI	GTTAAC	1 cut(s)	778
HphI	GGTGA	2 cut(s)	41, 797
Hpy166II	GTNNAC	2 cut(s)	778, 952
Hpy188I	TCNGA	7 cut(s)	337, 367, 568, 594, 637, 792, 999
Hpy8I	GTNNAC	2 cut(s)	778, 952
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	3 cut(s)	332, 423, 704
HpyCH4III	ACNGT	3 cut(s)	624, 685, 1024
HpyCH4V	TGCA	7 cut(s)	210, 488, 598, 629, 694, 796, 832
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	4 cut(s)	45, 182, 194, 903
Hsp92II	CATG	6 cut(s)	230, 329, 482, 508, 532, 767
Ksp22I	TGATCA	1 cut(s)	787
KspAI	GTTAAC	1 cut(s)	778
Kzo9I	GATC	5 cut(s)	421, 632, 787, 892, 1029
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	3 cut(s)	194, 253, 561
LweI	GCATC	5 cut(s)	30, 219, 585, 783, 987
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	679, 841
MalI	GATC	5 cut(s)	423, 634, 789, 894, 1031
MboI	GATC	5 cut(s)	421, 632, 787, 892, 1029
MboII	GAAGA	5 cut(s)	78, 308, 431, 563, 707
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	3 cut(s)	632, 892, 1029
MhlI	GDGCHC	2 cut(s)	592, 827
MlsI	TGGCCA	1 cut(s)	445
MluCI	AATT	5 cut(s)	95, 144, 275, 544, 967
MluNI	TGGCCA	1 cut(s)	445
MlyI	GAGTC	2 cut(s)	92, 756
MnlI	CCTC	8 cut(s)	25, 48, 54, 140, 463, 771, 855, 995
Mox20I	TGGCCA	1 cut(s)	445
MroXI	GAANNNNTTC	1 cut(s)	714
MscI	TGGCCA	1 cut(s)	445
MseI	TTAA	5 cut(s)	57, 435, 522, 777, 882
MslI	CAYNNNNRTG	1 cut(s)	483
Msp20I	TGGCCA	1 cut(s)	445
MspR9I	CCNGG	1 cut(s)	215
MunI	CAATTG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	995
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	204
NcoI	CCATGG	1 cut(s)	528
NdeII	GATC	5 cut(s)	421, 632, 787, 892, 1029
NlaIII	CATG	6 cut(s)	230, 329, 482, 508, 532, 767
NlaIV	GGNNCC	1 cut(s)	36
NmeAIII	GCCGAG	1 cut(s)	969
NmuCI	GTSAC	2 cut(s)	679, 841
NspV	TTCGAA	1 cut(s)	168
PagI	TCATGA	1 cut(s)	504
PctI	GAATGC	1 cut(s)	995
PdmI	GAANNNNTTC	1 cut(s)	714
PfeI	GAWTC	2 cut(s)	149, 606
PkrI	GCNGC	3 cut(s)	209, 268, 576
PleI	GAGTC	2 cut(s)	91, 755
PpsI	GAGTC	2 cut(s)	91, 755
Psp124BI	GAGCTC	1 cut(s)	592
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	387
PstNI	CAGNNNCTG	1 cut(s)	896
PsuI	RGATCY	3 cut(s)	632, 892, 1029
RsaI	GTAC	3 cut(s)	258, 311, 477
RsaNI	GTAC	3 cut(s)	257, 310, 476
RseI	CAYNNNNRTG	1 cut(s)	483
SacI	GAGCTC	1 cut(s)	592
SaqAI	TTAA	5 cut(s)	57, 435, 522, 777, 882
SatI	GCNGC	3 cut(s)	208, 267, 575
Sau3AI	GATC	5 cut(s)	421, 632, 787, 892, 1029
Sau96I	GGNCC	1 cut(s)	387
ScaI	AGTACT	1 cut(s)	311
SchI	GAGTC	2 cut(s)	92, 756
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	2 cut(s)	592, 827
SfaNI	GCATC	5 cut(s)	30, 219, 585, 783, 987
SfcI	CTRYAG	2 cut(s)	78, 768
SfuI	TTCGAA	1 cut(s)	168
SinI	GGWCC	1 cut(s)	387
SmiMI	CAYNNNNRTG	1 cut(s)	483
Sse9I	AATT	5 cut(s)	95, 144, 275, 544, 967
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	592
StyD4I	CCNGG	1 cut(s)	213
StyI	CCWWGG	2 cut(s)	528, 781
TaaI	ACNGT	3 cut(s)	624, 685, 1024
TaqI	TCGA	3 cut(s)	168, 406, 1017
TasI	AATT	5 cut(s)	95, 144, 275, 544, 967
TatI	WGTACW	2 cut(s)	309, 475
TfiI	GAWTC	2 cut(s)	149, 606
Tru1I	TTAA	5 cut(s)	57, 435, 522, 777, 882
Tru9I	TTAA	5 cut(s)	57, 435, 522, 777, 882
TscAI	CASTG	3 cut(s)	297, 921, 1029
TseFI	GTSAC	2 cut(s)	679, 841
TseI	GCWGC	3 cut(s)	207, 266, 574
Tsp45I	GTSAC	2 cut(s)	679, 841
TspDTI	ATGAA	4 cut(s)	314, 493, 495, 900
TspRI	CASTG	3 cut(s)	297, 921, 1029
VpaK11BI	GGWCC	1 cut(s)	387
XapI	RAATTY	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	951
XmnI	GAANNNNTTC	1 cut(s)	714
XspI	CTAG	1 cut(s)	173
ZrmI	AGTACT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.