Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8200202.1

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Reverse (-)

116 .. 656

Gene Structure 541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8200202.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgcaagcaagattcaacttctatccaccatgttcaagatccgataaagttcttggtgtgaagccacatacagataggtcaggagtgacagttttgttgcaagacaaagaagttgaaggtcttcaagttttggtagatgacaaatgggttagagtccccattgtgcctcatgctatagttgttaaccttggtgatcagatgcagattatgagtaatggtatattcaagagcccaatgcacagggttgtgacaaatccagaaaggatgaggctatctgtggccttgtttaatgaaccggatcctgatactgagattgctccagtggagagcttgatagatcatgaaacaaggccaagagtatacagaactgtcaaaaattatggtcacatcaactacgaatgctatcaaagaggagaaatagcactcgaaacagtgaagatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

147

Amino Acids

16.84

Weight (kDa)

6.51

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	360
AclWI	GGATC	3 cut(s)	33, 293, 306
AgsI	TTSAA	5 cut(s)	16, 36, 116, 125, 226
AluBI	AGCT	1 cut(s)	330
AluI	AGCT	1 cut(s)	330
AlwI	GGATC	3 cut(s)	33, 293, 306
AoxI	GGCC	2 cut(s)	279, 350
Asp700I	GAANNNNTTC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	113
BclI	TGATCA	1 cut(s)	193
BfmI	CTRYAG	1 cut(s)	174
BglII	AGATCT	1 cut(s)	438
BmiI	GGNNCC	1 cut(s)	300
BmsI	GCATC	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	187
BsaWI	WCCGGW	1 cut(s)	295
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bse1I	ACTGG	1 cut(s)	320
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	1 cut(s)	426
BshFI	GGCC	2 cut(s)	281, 352
BsiSI	CCGG	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	2 cut(s)	281, 352
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	5 cut(s)	38, 193, 298, 337, 438
BspANI	GGCC	2 cut(s)	281, 352
BspCNI	CTCAG	1 cut(s)	301
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	3 cut(s)	33, 293, 306
BsrI	ACTGG	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	5 cut(s)	38, 193, 298, 337, 438
BssNAI	GTATAC	1 cut(s)	361
BssT1I	CCWWGG	1 cut(s)	187
Bst1107I	GTATAC	1 cut(s)	361
Bst4CI	ACNGT	3 cut(s)	91, 370, 433
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	270
BstKTI	GATC	5 cut(s)	41, 196, 301, 340, 441
BstMBI	GATC	5 cut(s)	38, 193, 298, 337, 438
BstSFI	CTRYAG	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	3 cut(s)	38, 298, 438
BstYI	RGATCY	3 cut(s)	38, 298, 438
BstZ17I	GTATAC	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	281, 352
BtsCI	GGATG	1 cut(s)	270
BtsIMutI	CAGTG	2 cut(s)	327, 438
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	340
CviAII	CATG	3 cut(s)	30, 170, 341
CviJI	RGCY	6 cut(s)	64, 231, 271, 281, 330, 352
CviKI_1	RGCY	6 cut(s)	64, 231, 271, 281, 330, 352
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	5 cut(s)	40, 195, 300, 339, 440
DpnII	GATC	5 cut(s)	38, 193, 298, 337, 438
Eco130I	CCWWGG	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	3 cut(s)	33, 173, 344
FaiI	YATR	9 cut(s)	31, 69, 171, 176, 209, 221, 342, 361, 381
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	3 cut(s)	29, 169, 340
FbaI	TGATCA	1 cut(s)	193
FblI	GTMKAC	1 cut(s)	360
FokI	GGATG	1 cut(s)	277
FriOI	GRGCYC	1 cut(s)	233
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	281, 352
HapII	CCGG	1 cut(s)	296
Hin1II	CATG	3 cut(s)	33, 173, 344
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	2 cut(s)	12, 153
HpaI	GTTAAC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	2 cut(s)	184, 361
Hpy188I	TCNGA	2 cut(s)	43, 198
Hpy188III	TCNNGA	6 cut(s)	36, 81, 226, 257, 302, 341
Hpy8I	GTNNAC	2 cut(s)	184, 361
HpyAV	CCTTC	1 cut(s)	110
HpyCH4III	ACNGT	3 cut(s)	91, 370, 433
HpyCH4V	TGCA	4 cut(s)	4, 100, 202, 238
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	3 cut(s)	33, 173, 344
Ksp22I	TGATCA	1 cut(s)	193
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	5 cut(s)	38, 193, 298, 337, 438
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	6 cut(s)	66, 226, 270, 309, 315, 333
LweI	GCATC	1 cut(s)	189
MaeIII	GTNAC	3 cut(s)	85, 247, 383
MalI	GATC	5 cut(s)	40, 195, 300, 339, 440
MboI	GATC	5 cut(s)	38, 193, 298, 337, 438
MboII	GAAGA	1 cut(s)	113
MflI	RGATCY	3 cut(s)	38, 298, 438
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	1 cut(s)	376
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	3 cut(s)	177, 261, 404
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	2 cut(s)	183, 288
MspI	CCGG	1 cut(s)	296
Mva1269I	GAATGC	1 cut(s)	404
NdeII	GATC	5 cut(s)	38, 193, 298, 337, 438
NlaIII	CATG	3 cut(s)	33, 173, 344
NlaIV	GGNNCC	1 cut(s)	300
NmuCI	GTSAC	3 cut(s)	85, 247, 383
PagI	TCATGA	1 cut(s)	340
PctI	GAATGC	1 cut(s)	404
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	12
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	300
PsuI	RGATCY	3 cut(s)	38, 298, 438
SaqAI	TTAA	2 cut(s)	183, 288
Sau3AI	GATC	5 cut(s)	38, 193, 298, 337, 438
SchI	GAGTC	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	4 cut(s)	80, 121, 189, 332
SfaNI	GCATC	1 cut(s)	189
SfcI	CTRYAG	1 cut(s)	174
Sse9I	AATT	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	3 cut(s)	91, 370, 433
TaqI	TCGA	1 cut(s)	426
TasI	AATT	1 cut(s)	376
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	2 cut(s)	183, 288
Tru9I	TTAA	2 cut(s)	183, 288
TscAI	CASTG	2 cut(s)	327, 438
TseFI	GTSAC	3 cut(s)	85, 247, 383
Tsp45I	GTSAC	3 cut(s)	85, 247, 383
TspDTI	ATGAA	2 cut(s)	306, 357
TspRI	CASTG	2 cut(s)	327, 438
XmiI	GTMKAC	1 cut(s)	360
XmnI	GAANNNNTTC	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.