Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Forward (+)

1127649 .. 1129510

Gene Structure 1862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02112.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCCATCAAAGGTGATGAACCACCTCCTGAATATATTGTCACAGAGAGCAAGTTTGGAGCTATAGAGTCCTCACCAGAATTGGGTCAAATCCCCACCATTGATATCAGTCTCTTCTCCCCATCATCAATTGGTACTAAGGAAGCAGAGATCGAACTAAACAAACTCAGATCAGCTCTCAGCTCATCAGGCTGCTTCCAGGCAATAGGTCATGGGATTTCAAGTTCCTTTCTGGACAAGGTACGCGAAGTTGCAACACAATTCTTTGAACTTCCAGTGGAAGAGAAGCAAAAATATTCCAGAGAAATTTATGGTGGGCGTGAAGGGTTTGGAGAGGATCTCATTGTATCAGAGAAACAAGTTCTCGATTGGTCGTACCGCCTAATTCTTAATGTGTTCCCTGAAGATCATAGAAAGCTCGATCTCTGGCCAGAAAATCCATATGATTTTGGAGAGGTTGTGCATGAATATGCAACAAAGGTAAAGTGTATGATGGGTGTGCTGTTTAAGGCCATGGCAAAATCGTTGAATTTGGAGAAGAACAGCTTTTCAGATTACATGTTTGGAGAGGGAGCTCTGATGCAAGCAAGATTCAACTTCTATCCGCGGTGTTCAAGATCCGATCAGGTCCTTGGTGTCAAGCCACATACAGATAGGTCAGGAGTGACAGTTCTGTTGCAAGACAAAGAAGTTGAAGGTCTTCAGGTTTTGGTAGATGGGAAATGGGTTAGAGTCCCCATTGTGCCTCATGCAATAGTTGTTAATCTTGGTGATCAAATGCAGATTATGAGTAATGGTATCTTCAAGAGCCCAATGCACAGGGTTGTGACAAATCCAGACAGAATGAGACTATCTGTGGCCTTGTTTAATGAACCTGATCCTGAAACTGAGATTAGTCCTGTGGAGAAATTGATAGATGAGACAAGGATAAGGTTATATAAAACTGTCAAGAATTATGGTCGTATCAACTATGAATGCTATCAGAGAGGAGAGATAGCACTTGAAACAGTAAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

340

Amino Acids

38.43

Weight (kDa)

5.37

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	31 - 146	1.8e-22	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	197 - 292	1.9e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	246, 607
AciI	CCGC	3 cut(s)	379, 605, 607
AclWI	GGATC	3 cut(s)	345, 612, 872
AcoI	YGGCCR	2 cut(s)	3, 428
AcsI	RAATTY	2 cut(s)	306, 529
AcuI	CTGAAG	2 cut(s)	423, 686
AfaI	GTAC	3 cut(s)	136, 243, 377
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflIII	ACRYGT	1 cut(s)	558
AgsI	TTSAA	8 cut(s)	222, 269, 529, 595, 615, 695, 805, 1004
AjnI	CCWGG	1 cut(s)	198
AloI	GAACNNNNNNTCC	4 cut(s)	208, 240, 654, 686
AluBI	AGCT	6 cut(s)	62, 176, 183, 418, 546, 575
AluI	AGCT	6 cut(s)	62, 176, 183, 418, 546, 575
Alw21I	GWGCWC	1 cut(s)	577
Alw26I	GTCTC	3 cut(s)	116, 841, 914
AlwI	GGATC	3 cut(s)	345, 612, 872
AoxI	GGCC	4 cut(s)	3, 428, 510, 858
ApeKI	GCWGC	1 cut(s)	192
ApoI	RAATTY	2 cut(s)	306, 529
Asp700I	GAANNNNTTC	1 cut(s)	699
AspS9I	GGNCC	1 cut(s)	628
AsuHPI	GGTGA	3 cut(s)	26, 66, 782
AvaII	GGWCC	1 cut(s)	628
BalI	TGGCCA	2 cut(s)	5, 430
BanII	GRGCYC	2 cut(s)	577, 812
BbsI	GAAGAC	1 cut(s)	692
Bbv12I	GWGCWC	1 cut(s)	577
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	4 cut(s)	14, 130, 487, 710
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	1 cut(s)	772
BcoDI	GTCTC	3 cut(s)	116, 841, 914
BfmI	CTRYAG	1 cut(s)	63
BisI	GCNGC	1 cut(s)	193
BlsI	GCNGC	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	628
BmgT120I	GGNCC	1 cut(s)	628
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	692
BplI	GAGNNNNNCTC	2 cut(s)	324, 356
BsaJI	CCNNGG	3 cut(s)	513, 605, 631
BsaXI	ACNNNNNCTCC	4 cut(s)	444, 474, 654, 684
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	3 cut(s)	513, 605, 631
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	3 cut(s)	181, 193, 879
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	1002
BseXI	GCAGC	1 cut(s)	179
Bsh1236I	CGCG	2 cut(s)	246, 607
BshFI	GGCC	4 cut(s)	5, 430, 512, 860
BsiHKAI	GWGCWC	1 cut(s)	577
BslFI	GGGAC	1 cut(s)	719
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	3 cut(s)	116, 841, 914
BsmFI	GGGAC	1 cut(s)	719
BsmI	GAATGC	1 cut(s)	980
BsnI	GGCC	4 cut(s)	5, 430, 512, 860
Bsp1286I	GDGCHC	2 cut(s)	577, 812
Bsp143I	GATC	9 cut(s)	150, 170, 337, 406, 421, 617, 622, 772, 877
Bsp19I	CCATGG	1 cut(s)	513
BspACI	CCGC	3 cut(s)	379, 605, 607
BspANI	GGCC	4 cut(s)	5, 430, 512, 860
BspCNI	CTCAG	3 cut(s)	180, 192, 880
BspFNI	CGCG	2 cut(s)	246, 607
BspPI	GGATC	3 cut(s)	345, 612, 872
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	3 cut(s)	513, 605, 631
BssMI	GATC	9 cut(s)	150, 170, 337, 406, 421, 617, 622, 772, 877
BssT1I	CCWWGG	2 cut(s)	513, 631
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	3 cut(s)	670, 946, 1009
Bst6I	CTCTTC	2 cut(s)	119, 276
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	4 cut(s)	138, 167, 179, 888
BstDSI	CCRYGG	2 cut(s)	513, 605
BstFNI	CGCG	2 cut(s)	246, 607
BstKTI	GATC	9 cut(s)	153, 173, 340, 409, 424, 620, 625, 775, 880
BstMAI	GTCTC	3 cut(s)	116, 841, 914
BstMBI	GATC	9 cut(s)	150, 170, 337, 406, 421, 617, 622, 772, 877
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	562
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	63
BstUI	CGCG	2 cut(s)	246, 607
BstV1I	GCAGC	1 cut(s)	179
BstV2I	GAAGAC	1 cut(s)	692
BstX2I	RGATCY	2 cut(s)	337, 617
BstYI	RGATCY	2 cut(s)	337, 617
BsuRI	GGCC	4 cut(s)	5, 430, 512, 860
BtgI	CCRYGG	2 cut(s)	513, 605
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	585
Cfr13I	GGNCC	1 cut(s)	628
Cfr42I	CCGCGG	1 cut(s)	608
Csp6I	GTAC	3 cut(s)	135, 242, 376
CviAII	CATG	5 cut(s)	212, 464, 514, 559, 749
CviQI	GTAC	3 cut(s)	135, 242, 376
DdeI	CTNAG	4 cut(s)	138, 167, 179, 888
DpnI	GATC	9 cut(s)	152, 172, 339, 408, 423, 619, 624, 774, 879
DpnII	GATC	9 cut(s)	150, 170, 337, 406, 421, 617, 622, 772, 877
EaeI	YGGCCR	2 cut(s)	3, 428
Eam1104I	CTCTTC	2 cut(s)	119, 276
EarI	CTCTTC	2 cut(s)	119, 276
Ecl136II	GAGCTC	1 cut(s)	575
Eco130I	CCWWGG	2 cut(s)	513, 631
Eco24I	GRGCYC	2 cut(s)	577, 812
Eco32I	GATATC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	628
Eco53kI	GAGCTC	1 cut(s)	575
Eco57I	CTGAAG	2 cut(s)	423, 686
EcoICRI	GAGCTC	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	628
EcoRII	CCWGG	1 cut(s)	198
EcoRV	GATATC	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	513, 631
EcoT38I	GRGCYC	2 cut(s)	577, 812
ErhI	CCWWGG	2 cut(s)	513, 631
FaeI	CATG	5 cut(s)	215, 467, 517, 562, 752
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	1 cut(s)	719
FatI	CATG	5 cut(s)	211, 463, 513, 558, 748
FauNDI	CATATG	1 cut(s)	442
FbaI	TGATCA	1 cut(s)	772
Fnu4HI	GCNGC	1 cut(s)	193
FriOI	GRGCYC	2 cut(s)	577, 812
Fsp4HI	GCNGC	1 cut(s)	193
GluI	GCNGC	1 cut(s)	193
HaeIII	GGCC	4 cut(s)	5, 430, 512, 860
Hin1II	CATG	5 cut(s)	215, 467, 517, 562, 752
HinfI	GANTC	3 cut(s)	68, 591, 732
HphI	GGTGA	3 cut(s)	26, 66, 782
Hpy188I	TCNGA	7 cut(s)	170, 352, 553, 579, 622, 984, 1019
HpyAV	CCTTC	2 cut(s)	317, 689
HpyCH4III	ACNGT	3 cut(s)	670, 946, 1009
HpyCH4V	TGCA	8 cut(s)	254, 463, 473, 583, 679, 752, 781, 817
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
HpyF3I	CTNAG	4 cut(s)	138, 167, 179, 888
Hsp92II	CATG	5 cut(s)	215, 467, 517, 562, 752
Ksp22I	TGATCA	1 cut(s)	772
KspI	CCGCGG	1 cut(s)	608
Kzo9I	GATC	9 cut(s)	150, 170, 337, 406, 421, 617, 622, 772, 877
LmnI	GCTCC	2 cut(s)	59, 572
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	1 cut(s)	570
MaeIII	GTNAC	3 cut(s)	40, 664, 826
MalI	GATC	9 cut(s)	152, 172, 339, 408, 423, 619, 624, 774, 879
MboI	GATC	9 cut(s)	150, 170, 337, 406, 421, 617, 622, 772, 877
MboII	GAAGA	6 cut(s)	106, 293, 416, 550, 692, 793
MfeI	CAATTG	1 cut(s)	129
MflI	RGATCY	2 cut(s)	337, 617
MhlI	GDGCHC	2 cut(s)	577, 812
MlsI	TGGCCA	2 cut(s)	5, 430
MluCI	AATT	8 cut(s)	80, 129, 260, 306, 384, 529, 908, 952
MluNI	TGGCCA	2 cut(s)	5, 430
MlyI	GAGTC	2 cut(s)	77, 741
MnlI	CCTC	7 cut(s)	36, 82, 328, 448, 562, 756, 980
Mox20I	TGGCCA	2 cut(s)	5, 430
MroXI	GAANNNNTTC	1 cut(s)	699
MscI	TGGCCA	2 cut(s)	5, 430
MseI	TTAA	4 cut(s)	390, 507, 762, 867
MslI	CAYNNNNRTG	1 cut(s)	468
Msp20I	TGGCCA	2 cut(s)	5, 430
MspA1I	CMGCKG	1 cut(s)	607
MspR9I	CCNGG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	980
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	2 cut(s)	246, 607
MwoI	GCNNNNNNNGC	1 cut(s)	189
NcoI	CCATGG	1 cut(s)	513
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	9 cut(s)	150, 170, 337, 406, 421, 617, 622, 772, 877
NlaIII	CATG	5 cut(s)	215, 467, 517, 562, 752
NmuCI	GTSAC	3 cut(s)	40, 664, 826
NspI	RCATGY	1 cut(s)	562
PciI	ACATGT	1 cut(s)	558
PctI	GAATGC	1 cut(s)	980
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	1 cut(s)	591
PkrI	GCNGC	1 cut(s)	194
PleI	GAGTC	2 cut(s)	76, 740
PpsI	GAGTC	2 cut(s)	76, 740
PpuMI	RGGWCCY	1 cut(s)	628
PscI	ACATGT	1 cut(s)	558
Psp124BI	GAGCTC	1 cut(s)	577
Psp5II	RGGWCCY	1 cut(s)	628
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	628
PspPPI	RGGWCCY	1 cut(s)	628
PsuI	RGATCY	2 cut(s)	337, 617
RsaI	GTAC	3 cut(s)	136, 243, 377
RsaNI	GTAC	3 cut(s)	135, 242, 376
RseI	CAYNNNNRTG	1 cut(s)	468
SacI	GAGCTC	1 cut(s)	577
SacII	CCGCGG	1 cut(s)	608
SaqAI	TTAA	4 cut(s)	390, 507, 762, 867
SatI	GCNGC	1 cut(s)	193
Sau3AI	GATC	9 cut(s)	150, 170, 337, 406, 421, 617, 622, 772, 877
Sau96I	GGNCC	1 cut(s)	628
SchI	GAGTC	2 cut(s)	77, 741
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	2 cut(s)	577, 812
SfaNI	GCATC	1 cut(s)	570
SfcI	CTRYAG	1 cut(s)	63
Sfr303I	CCGCGG	1 cut(s)	608
SgrBI	CCGCGG	1 cut(s)	608
SinI	GGWCC	1 cut(s)	628
SmiMI	CAYNNNNRTG	1 cut(s)	468
Sse9I	AATT	8 cut(s)	80, 129, 260, 306, 384, 529, 908, 952
SsiI	CCGC	3 cut(s)	379, 605, 607
SspI	AATATT	1 cut(s)	296
SstI	GAGCTC	1 cut(s)	577
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	2 cut(s)	513, 631
TaaI	ACNGT	3 cut(s)	670, 946, 1009
TaqI	TCGA	3 cut(s)	153, 366, 420
TasI	AATT	8 cut(s)	80, 129, 260, 306, 384, 529, 908, 952
TfiI	GAWTC	1 cut(s)	591
Tru1I	TTAA	4 cut(s)	390, 507, 762, 867
Tru9I	TTAA	4 cut(s)	390, 507, 762, 867
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	3 cut(s)	40, 664, 826
TseI	GCWGC	1 cut(s)	192
Tsp45I	GTSAC	3 cut(s)	40, 664, 826
TspDTI	ATGAA	4 cut(s)	33, 480, 885, 987
TspRI	CASTG	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	628
XapI	RAATTY	2 cut(s)	306, 529
XceI	RCATGY	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.