Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Forward (+)

2031901 .. 2033551

Gene Structure 1651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46262

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGTCAGTGACAGACATGGCTCTCCTTCATGCTGATGGTGACTCTGTGAGGTTGTCCATGAGTGTCCAAGAGATGAGTATCAAAGGTGAGGAACCTCCCCCTCAGTATATTGTTAAAGAAAGCAAGTTCGGAGCTATAGAGTCTTCCCCAGAATTGGGTCAAATCCCCACCATTGATGTCAGTCTCTTCTCCCCATCATCAATTCATACCAAGGAAGCAGAGATCGAACTGAACAAACTCAAAATAGCTCTCAGCTCATCAGGCTGCATCCAGGCGGTTGGTCATGGGATATCAAGTTCCTTTCTGGACAAGGTACGCGAAGCTGCGACGCAATTCTTTGAACTCCCAGTGGAAGACAAGGAAAAGTACTCCAGAGCTGTTCATGGTGGCTCTGAAGGGTATGGGAATGATGTCATTGTTTCAGAGAAGCAAGTTCTTGATTGGTCCTATCGCCTAACACTTCGAGTATTTCCTGAAGATCAAAGAAGGCTTAACCTTTGGCCAGAAAATCCAAATGATTTTGGAGAGGTTGTACATGAATATGCAACAAAGGTAAAGTTCATGATGGGGGTTCTTTTTAAGGCCATGGCGAAATCATTGAATTTGGAAGAGAACAGCTTTTCAGATAAGCTGCTTGGAGAGAGAGCTCTGATGCAAGCAAGATTCAACTTCTATCCACCGTGTTCAAGATCTGATAAAGTTCTTGGTGTGAAGCCACATACAGATAGGTCAGGAGTGACAGTTTTGTTGCAAGACAAAGAAGTTGAAGGTCTTCAAGTTTTGGTAGATGACAAATGGGTTAGAGTCCCCATTGTGCCTCATGCTATAGTTGTTAACCTTGGTGACCAGATGCAGATTATGAGTAATGGTATATTCAAGAGCCCAATGCACAGGGTTGTGACAAATCCAGAAAGGATGAGGCTATCTGTGGCCTTGTTTAATGAACCGGATCCTGATACTGAGATTGCTCCAGTGGAGAGCTTGATAGATCATGAAACAAGGCCAAGAGTATACAGAACTGTCAAAAATTATGGTCACATCAACTACGAATGCTATCAAAGAGGAGAAATAGCACTCGAAACAGTGAAGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

364

Amino Acids

40.97

Weight (kDa)

5.48

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	55 - 170	8.8e-22	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	221 - 316	4.1e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1011
AccII	CGCG	1 cut(s)	318
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	2 cut(s)	944, 957
AcoI	YGGCCR	1 cut(s)	500
AcsI	RAATTY	1 cut(s)	601
AcuI	CTGAAG	2 cut(s)	414, 495
AfaI	GTAC	3 cut(s)	315, 368, 534
AfiI	CCNNNNNNNGG	2 cut(s)	154, 155
AgsI	TTSAA	7 cut(s)	341, 601, 667, 687, 767, 776, 877
AjnI	CCWGG	1 cut(s)	270
AloI	GAACNNNNNNTCC	2 cut(s)	280, 312
AluBI	AGCT	9 cut(s)	134, 248, 255, 323, 377, 618, 631, 647, 981
AluI	AGCT	9 cut(s)	134, 248, 255, 323, 377, 618, 631, 647, 981
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	944, 957
AoxI	GGCC	4 cut(s)	500, 582, 930, 1001
ApeKI	GCWGC	3 cut(s)	264, 323, 631
ApoI	RAATTY	1 cut(s)	601
Asp700I	GAANNNNTTC	1 cut(s)	771
AspS9I	GGNCC	1 cut(s)	444
AsuHPI	GGTGA	3 cut(s)	50, 98, 854
AvaII	GGWCC	1 cut(s)	444
BalI	TGGCCA	1 cut(s)	502
BamHI	GGATCC	1 cut(s)	949
BanII	GRGCYC	2 cut(s)	649, 884
BbsI	GAAGAC	3 cut(s)	135, 360, 764
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	3 cut(s)	251, 310, 618
BccI	CCATC	3 cut(s)	29, 202, 559
BciT130I	CCWGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	188
BfmI	CTRYAG	2 cut(s)	135, 825
BglII	AGATCT	2 cut(s)	689, 1089
BisI	GCNGC	3 cut(s)	265, 324, 632
BlsI	GCNGC	3 cut(s)	266, 325, 633
BmcAI	AGTACT	1 cut(s)	368
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	444
BmgT120I	GGNCC	1 cut(s)	444
BmiI	GGNNCC	2 cut(s)	93, 951
BmrFI	CCNGG	1 cut(s)	272
BmrI	ACTGGG	1 cut(s)	341
BmsI	GCATC	3 cut(s)	276, 642, 840
BmuI	ACTGGG	1 cut(s)	341
BpiI	GAAGAC	3 cut(s)	135, 360, 764
BpmI	CTGGAG	2 cut(s)	355, 954
BsaBI	GATNNNNATC	1 cut(s)	77
BsaJI	CCNNGG	3 cut(s)	210, 585, 838
BsaWI	WCCGGW	1 cut(s)	946
BsaXI	ACNNNNNCTCC	4 cut(s)	516, 546, 726, 756
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 155
Bse1I	ACTGG	2 cut(s)	347, 971
Bse8I	GATNNNNATC	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	3 cut(s)	210, 585, 838
BseGI	GGATG	2 cut(s)	267, 921
BseJI	GATNNNNATC	1 cut(s)	77
BseLI	CCNNNNNNNGG	2 cut(s)	154, 155
BseMII	CTCAG	3 cut(s)	116, 265, 951
BseNI	ACTGG	2 cut(s)	347, 971
BseRI	GAGGAG	1 cut(s)	1077
BseXI	GCAGC	3 cut(s)	251, 310, 618
Bsh1236I	CGCG	1 cut(s)	318
BshFI	GGCC	4 cut(s)	502, 584, 932, 1003
BsiHKAI	GWGCWC	1 cut(s)	649
BsiSI	CCGG	1 cut(s)	947
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	2 cut(s)	154, 155
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	791
BsmI	GAATGC	1 cut(s)	1055
BsnI	GGCC	4 cut(s)	502, 584, 932, 1003
Bsp1286I	GDGCHC	2 cut(s)	649, 884
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	6 cut(s)	222, 478, 689, 949, 988, 1089
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	4 cut(s)	502, 584, 932, 1003
BspCNI	CTCAG	3 cut(s)	115, 264, 952
BspFNI	CGCG	1 cut(s)	318
BspHI	TCATGA	2 cut(s)	561, 991
BspLI	GGNNCC	2 cut(s)	93, 951
BspPI	GGATC	2 cut(s)	944, 957
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	2 cut(s)	347, 971
BssECI	CCNNGG	3 cut(s)	210, 585, 838
BssMI	GATC	6 cut(s)	222, 478, 689, 949, 988, 1089
BssNAI	GTATAC	1 cut(s)	1012
BssT1I	CCWWGG	3 cut(s)	210, 585, 838
Bst1107I	GTATAC	1 cut(s)	1012
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	4 cut(s)	681, 742, 1021, 1084
Bst6I	CTCTTC	2 cut(s)	191, 603
BstAUI	TGTACA	1 cut(s)	532
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	3 cut(s)	102, 251, 960
BstDSI	CCRYGG	1 cut(s)	585
BstEII	GGTNACC	1 cut(s)	842
BstF5I	GGATG	2 cut(s)	267, 921
BstFNI	CGCG	1 cut(s)	318
BstKTI	GATC	6 cut(s)	225, 481, 692, 952, 991, 1092
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	6 cut(s)	222, 478, 689, 949, 988, 1089
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNI	CCWGG	1 cut(s)	272
BstPI	GGTNACC	1 cut(s)	842
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	2 cut(s)	135, 825
BstUI	CGCG	1 cut(s)	318
BstV1I	GCAGC	3 cut(s)	251, 310, 618
BstV2I	GAAGAC	3 cut(s)	135, 360, 764
BstX2I	RGATCY	3 cut(s)	689, 949, 1089
BstXI	CCANNNNNNTGG	1 cut(s)	278
BstYI	RGATCY	3 cut(s)	689, 949, 1089
BstZ17I	GTATAC	1 cut(s)	1012
BsuRI	GGCC	4 cut(s)	502, 584, 932, 1003
BtgI	CCRYGG	1 cut(s)	585
BtsCI	GGATG	2 cut(s)	267, 921
BtsIMutI	CAGTG	4 cut(s)	12, 354, 978, 1089
Cac8I	GCNNGC	1 cut(s)	657
CciI	TCATGA	2 cut(s)	561, 991
Cfr13I	GGNCC	1 cut(s)	444
CseI	GACGC	1 cut(s)	337
Csp6I	GTAC	3 cut(s)	314, 367, 533
CviQI	GTAC	3 cut(s)	314, 367, 533
DdeI	CTNAG	3 cut(s)	102, 251, 960
DpnI	GATC	6 cut(s)	224, 480, 691, 951, 990, 1091
DpnII	GATC	6 cut(s)	222, 478, 689, 949, 988, 1089
EaeI	YGGCCR	1 cut(s)	500
Eam1104I	CTCTTC	2 cut(s)	191, 603
EarI	CTCTTC	2 cut(s)	191, 603
Ecl136II	GAGCTC	1 cut(s)	647
Eco130I	CCWWGG	3 cut(s)	210, 585, 838
Eco24I	GRGCYC	2 cut(s)	649, 884
Eco32I	GATATC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	647
Eco57I	CTGAAG	2 cut(s)	414, 495
Eco91I	GGTNACC	1 cut(s)	842
EcoICRI	GAGCTC	1 cut(s)	647
EcoO65I	GGTNACC	1 cut(s)	842
EcoRII	CCWGG	1 cut(s)	270
EcoRV	GATATC	1 cut(s)	291
EcoT14I	CCWWGG	3 cut(s)	210, 585, 838
EcoT38I	GRGCYC	2 cut(s)	649, 884
ErhI	CCWWGG	3 cut(s)	210, 585, 838
FaqI	GGGAC	1 cut(s)	791
FblI	GTMKAC	1 cut(s)	1011
Fnu4HI	GCNGC	3 cut(s)	265, 324, 632
FokI	GGATG	2 cut(s)	254, 928
FriOI	GRGCYC	2 cut(s)	649, 884
Fsp4HI	GCNGC	3 cut(s)	265, 324, 632
GluI	GCNGC	3 cut(s)	265, 324, 632
GsuI	CTGGAG	2 cut(s)	355, 954
HaeIII	GGCC	4 cut(s)	502, 584, 932, 1003
HapII	CCGG	1 cut(s)	947
HgaI	GACGC	1 cut(s)	337
HincII	GTYRAC	1 cut(s)	835
HindII	GTYRAC	1 cut(s)	835
HinfI	GANTC	4 cut(s)	41, 140, 663, 804
HpaI	GTTAAC	1 cut(s)	835
HpaII	CCGG	1 cut(s)	947
HphI	GGTGA	3 cut(s)	50, 98, 854
Hpy166II	GTNNAC	2 cut(s)	835, 1012
Hpy188I	TCNGA	6 cut(s)	131, 394, 424, 625, 651, 694
Hpy8I	GTNNAC	2 cut(s)	835, 1012
Hpy99I	CGWCG	1 cut(s)	331
HpyAV	CCTTC	4 cut(s)	35, 389, 480, 761
HpyCH4III	ACNGT	4 cut(s)	681, 742, 1021, 1084
HpyCH4V	TGCA	6 cut(s)	267, 545, 655, 751, 853, 889
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	3 cut(s)	102, 251, 960
KspAI	GTTAAC	1 cut(s)	835
Kzo9I	GATC	6 cut(s)	222, 478, 689, 949, 988, 1089
LmnI	GCTCC	2 cut(s)	131, 973
Lsp1109I	GCAGC	3 cut(s)	251, 310, 618
LweI	GCATC	3 cut(s)	276, 642, 840
MaeIII	GTNAC	6 cut(s)	7, 38, 736, 842, 898, 1034
MalI	GATC	6 cut(s)	224, 480, 691, 951, 990, 1091
MboI	GATC	6 cut(s)	222, 478, 689, 949, 988, 1089
MboII	GAAGA	6 cut(s)	135, 178, 365, 488, 620, 764
MflI	RGATCY	3 cut(s)	689, 949, 1089
MhlI	GDGCHC	2 cut(s)	649, 884
MlsI	TGGCCA	1 cut(s)	502
MluCI	AATT	5 cut(s)	152, 201, 332, 601, 1027
MluNI	TGGCCA	1 cut(s)	502
MlyI	GAGTC	3 cut(s)	35, 149, 813
MnlI	CCTC	8 cut(s)	42, 82, 105, 111, 520, 828, 912, 1055
Mox20I	TGGCCA	1 cut(s)	502
MroXI	GAANNNNTTC	1 cut(s)	771
MscI	TGGCCA	1 cut(s)	502
MseI	TTAA	5 cut(s)	114, 492, 579, 834, 939
MslI	CAYNNNNRTG	2 cut(s)	33, 540
Msp20I	TGGCCA	1 cut(s)	502
MspI	CCGG	1 cut(s)	947
MspR9I	CCNGG	1 cut(s)	272
Mva1269I	GAATGC	1 cut(s)	1055
MvaI	CCWGG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	585
NdeII	GATC	6 cut(s)	222, 478, 689, 949, 988, 1089
NlaIV	GGNNCC	2 cut(s)	93, 951
NmuCI	GTSAC	6 cut(s)	7, 38, 736, 842, 898, 1034
PagI	TCATGA	2 cut(s)	561, 991
PctI	GAATGC	1 cut(s)	1055
PdmI	GAANNNNTTC	1 cut(s)	771
PfeI	GAWTC	1 cut(s)	663
PkrI	GCNGC	3 cut(s)	266, 325, 633
PleI	GAGTC	3 cut(s)	35, 148, 812
PpsI	GAGTC	3 cut(s)	35, 148, 812
Psp124BI	GAGCTC	1 cut(s)	649
Psp6I	CCWGG	1 cut(s)	270
PspEI	GGTNACC	1 cut(s)	842
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	2 cut(s)	93, 951
PspPI	GGNCC	1 cut(s)	444
PsuI	RGATCY	3 cut(s)	689, 949, 1089
RsaI	GTAC	3 cut(s)	315, 368, 534
RsaNI	GTAC	3 cut(s)	314, 367, 533
RseI	CAYNNNNRTG	2 cut(s)	33, 540
SacI	GAGCTC	1 cut(s)	649
SaqAI	TTAA	5 cut(s)	114, 492, 579, 834, 939
SatI	GCNGC	3 cut(s)	265, 324, 632
Sau3AI	GATC	6 cut(s)	222, 478, 689, 949, 988, 1089
Sau96I	GGNCC	1 cut(s)	444
ScaI	AGTACT	1 cut(s)	368
SchI	GAGTC	3 cut(s)	35, 149, 813
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	2 cut(s)	649, 884
SfaNI	GCATC	3 cut(s)	276, 642, 840
SfcI	CTRYAG	2 cut(s)	135, 825
SinI	GGWCC	1 cut(s)	444
SmiMI	CAYNNNNRTG	2 cut(s)	33, 540
Sse9I	AATT	5 cut(s)	152, 201, 332, 601, 1027
SsiI	CCGC	1 cut(s)	275
SstI	GAGCTC	1 cut(s)	649
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	3 cut(s)	210, 585, 838
TaaI	ACNGT	4 cut(s)	681, 742, 1021, 1084
TaqI	TCGA	3 cut(s)	225, 463, 1077
TasI	AATT	5 cut(s)	152, 201, 332, 601, 1027
TatI	WGTACW	2 cut(s)	366, 532
TfiI	GAWTC	1 cut(s)	663
Tru1I	TTAA	5 cut(s)	114, 492, 579, 834, 939
Tru9I	TTAA	5 cut(s)	114, 492, 579, 834, 939
TscAI	CASTG	4 cut(s)	12, 354, 978, 1089
TseFI	GTSAC	6 cut(s)	7, 38, 736, 842, 898, 1034
TseI	GCWGC	3 cut(s)	264, 323, 631
Tsp45I	GTSAC	6 cut(s)	7, 38, 736, 842, 898, 1034
TspDTI	ATGAA	7 cut(s)	17, 194, 371, 550, 552, 957, 1008
TspRI	CASTG	4 cut(s)	12, 354, 978, 1089
VpaK11BI	GGWCC	1 cut(s)	444
XapI	RAATTY	1 cut(s)	601
XmiI	GTMKAC	1 cut(s)	1011
XmnI	GAANNNNTTC	1 cut(s)	771
ZrmI	AGTACT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.