Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009355.1

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Forward (+)

17325 .. 18721

Gene Structure 1397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009355.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atgtcaactaaacagggtggaattccccagcccgctactgagggggacaaaggtgacgaaccaccctctgaatatattattagagaaagcaagtttggagctatagagtcttccccagaattgggtcaaatccccatcattgatgtcagtctcttctccccaccatcaattgatactaaggaagcagagattgaactaaacaaactcagagaaactctcagctcatcaggctgcttccaggcaataggtcatgggatttcaagttcctttctggacaaggtacgcgaagctgcgaaacaattctttgaacttccagtggaagagaagcaaagatactctagagaaatttatggtggccgtgaaggatatggggaggatgccattgtctcagagaagcaaattcgtgattggtcctaccgcctaattcttcgtgtattccctgaagatcaaagaaggctcaatctctggccagaaaatccaaatgattttggagaagttgtacatgattacgcagcaaaggtgaagtttatgatggatgttctgtttaaggcgaaggccatatctttgaatttgcaagagaacagcttttcggataagctgtttggagatcacgctcagatgatagcaagattcaacttctttccgcggtgttcaaggcctgatcaggtgtttggtgtgaagccacatacagatgggacaggattaactgttctgttgcaggacaaagaagtagagggtcttcaagttttggtggatggtaaatgggttagagtccccattgtgccacatgccatttttattatgagcaatgacatattcaagagtccaccgcacagggtggtgacaaatccagaaagaatgaggccatctgtggccttgcttaatgtaccagatcctgaaaccgagattggtccagtggagaaactgataggtgagagtgtgagacaaggccaaggaaatacaaaaatgtcaagaactattccagtattaactataagtgctttcagagaggagaagttgcacttgaaacattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

344

Amino Acids

38.79

Weight (kDa)

5.73

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	285, 646
AciI	CCGC	5 cut(s)	33, 418, 644, 646, 830
AclWI	GGATC	1 cut(s)	887
AcoI	YGGCCR	2 cut(s)	355, 467
AcsI	RAATTY	4 cut(s)	21, 345, 399, 568
AcuI	CTGAAG	1 cut(s)	462
AdeI	CACNNNGTG	1 cut(s)	838
AfaI	GTAC	3 cut(s)	282, 501, 888
AfiI	CCNNNNNNNGG	2 cut(s)	121, 122
AgsI	TTSAA	9 cut(s)	194, 261, 308, 568, 634, 654, 743, 820, 1027
AjnI	CCWGG	1 cut(s)	237
AjuI	GAANNNNNNNTTGG	4 cut(s)	78, 110, 891, 923
AloI	GAACNNNNNNTCC	4 cut(s)	247, 279, 693, 725
AluBI	AGCT	5 cut(s)	101, 222, 290, 585, 598
AluI	AGCT	5 cut(s)	101, 222, 290, 585, 598
Alw26I	GTCTC	3 cut(s)	155, 391, 937
AlwI	GGATC	1 cut(s)	887
AlwNI	CAGNNNCTG	1 cut(s)	896
AoxI	GGCC	7 cut(s)	355, 467, 555, 656, 863, 873, 949
ApeKI	GCWGC	3 cut(s)	231, 290, 512
ApoI	RAATTY	4 cut(s)	21, 345, 399, 568
Asp700I	GAANNNNTTC	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	411, 911
AsuHPI	GGTGA	4 cut(s)	65, 532, 853, 944
AvaII	GGWCC	2 cut(s)	411, 911
BalI	TGGCCA	1 cut(s)	469
BarI	GAAGNNNNNNTAC	4 cut(s)	317, 349, 723, 755
BbsI	GAAGAC	2 cut(s)	102, 731
BbvI	GCAGC	3 cut(s)	218, 277, 524
BccI	CCATC	6 cut(s)	143, 172, 526, 686, 749, 874
BceAI	ACGGC	1 cut(s)	342
BciT130I	CCWGG	1 cut(s)	239
BclI	TGATCA	1 cut(s)	661
BcoDI	GTCTC	3 cut(s)	155, 391, 937
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	102
BisI	GCNGC	3 cut(s)	232, 291, 513
BlsI	GCNGC	3 cut(s)	233, 292, 514
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	2 cut(s)	411, 911
BmgT120I	GGNCC	2 cut(s)	411, 911
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	367
BpiI	GAAGAC	2 cut(s)	102, 731
BplI	GAGNNNNNCTC	2 cut(s)	201, 233
BsaJI	CCNNGG	2 cut(s)	644, 952
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 122
Bse1I	ACTGG	3 cut(s)	314, 914, 983
Bse3DI	GCAATG	1 cut(s)	814
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	2 cut(s)	644, 952
BseGI	GGATG	3 cut(s)	382, 541, 760
BseLI	CCNNNNNNNGG	2 cut(s)	121, 122
BseMI	GCAATG	1 cut(s)	814
BseMII	CTCAG	5 cut(s)	30, 220, 232, 402, 629
BseNI	ACTGG	3 cut(s)	314, 914, 983
BseRI	GAGGAG	1 cut(s)	1025
BseXI	GCAGC	3 cut(s)	218, 277, 524
BseYI	CCCAGC	1 cut(s)	27
Bsh1236I	CGCG	2 cut(s)	285, 646
BshFI	GGCC	7 cut(s)	357, 469, 557, 658, 865, 875, 951
BslFI	GGGAC	3 cut(s)	59, 709, 758
BslI	CCNNNNNNNGG	2 cut(s)	121, 122
BsmAI	GTCTC	3 cut(s)	155, 391, 937
BsmFI	GGGAC	3 cut(s)	59, 709, 758
BsnI	GGCC	7 cut(s)	357, 469, 557, 658, 865, 875, 951
Bsp1407I	TGTACA	1 cut(s)	499
Bsp143I	GATC	4 cut(s)	445, 607, 661, 892
BspACI	CCGC	5 cut(s)	33, 418, 644, 646, 830
BspANI	GGCC	7 cut(s)	357, 469, 557, 658, 865, 875, 951
BspCNI	CTCAG	5 cut(s)	31, 219, 231, 401, 628
BspFNI	CGCG	2 cut(s)	285, 646
BspPI	GGATC	1 cut(s)	887
BsrDI	GCAATG	1 cut(s)	814
BsrGI	TGTACA	1 cut(s)	499
BsrI	ACTGG	3 cut(s)	314, 914, 983
BssECI	CCNNGG	2 cut(s)	644, 952
BssMI	GATC	4 cut(s)	445, 607, 661, 892
BssT1I	CCWWGG	1 cut(s)	952
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	1 cut(s)	709
Bst6I	CTCTTC	2 cut(s)	158, 315
BstAUI	TGTACA	1 cut(s)	499
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	6 cut(s)	39, 177, 206, 218, 388, 615
BstDSI	CCRYGG	1 cut(s)	644
BstF5I	GGATG	3 cut(s)	382, 541, 760
BstFNI	CGCG	2 cut(s)	285, 646
BstKTI	GATC	4 cut(s)	448, 610, 664, 895
BstMAI	GTCTC	3 cut(s)	155, 391, 937
BstMBI	GATC	4 cut(s)	445, 607, 661, 892
BstMWI	GCNNNNNNNGC	1 cut(s)	228
BstNI	CCWGG	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	791
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	102
BstUI	CGCG	2 cut(s)	285, 646
BstV1I	GCAGC	3 cut(s)	218, 277, 524
BstV2I	GAAGAC	2 cut(s)	102, 731
BstX2I	RGATCY	1 cut(s)	892
BstYI	RGATCY	1 cut(s)	892
BsuRI	GGCC	7 cut(s)	357, 469, 557, 658, 865, 875, 951
BtgI	CCRYGG	1 cut(s)	644
BtsCI	GGATG	3 cut(s)	382, 541, 760
BtsIMutI	CAGTG	2 cut(s)	321, 921
Cac8I	GCNNGC	1 cut(s)	33
CaiI	CAGNNNCTG	1 cut(s)	896
Cfr13I	GGNCC	2 cut(s)	411, 911
Cfr42I	CCGCGG	1 cut(s)	647
Csp6I	GTAC	3 cut(s)	281, 500, 887
CviAII	CATG	3 cut(s)	251, 503, 788
CviQI	GTAC	3 cut(s)	281, 500, 887
DdeI	CTNAG	6 cut(s)	39, 177, 206, 218, 388, 615
DpnI	GATC	4 cut(s)	447, 609, 663, 894
DpnII	GATC	4 cut(s)	445, 607, 661, 892
DraIII	CACNNNGTG	1 cut(s)	838
EaeI	YGGCCR	2 cut(s)	355, 467
Eam1104I	CTCTTC	2 cut(s)	158, 315
EarI	CTCTTC	2 cut(s)	158, 315
Eco130I	CCWWGG	1 cut(s)	952
Eco147I	AGGCCT	1 cut(s)	658
Eco47I	GGWCC	2 cut(s)	411, 911
Eco57I	CTGAAG	1 cut(s)	462
EcoRI	GAATTC	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	952
ErhI	CCWWGG	1 cut(s)	952
FaeI	CATG	3 cut(s)	254, 506, 791
FalI	AAGNNNNNCTT	1 cut(s)	1007
FaqI	GGGAC	3 cut(s)	59, 709, 758
FatI	CATG	3 cut(s)	250, 502, 787
FauI	CCCGC	1 cut(s)	40
FbaI	TGATCA	1 cut(s)	661
Fnu4HI	GCNGC	3 cut(s)	232, 291, 513
FokI	GGATG	3 cut(s)	389, 548, 767
Fsp4HI	GCNGC	3 cut(s)	232, 291, 513
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	3 cut(s)	232, 291, 513
GsaI	CCCAGC	1 cut(s)	31
HaeIII	GGCC	7 cut(s)	357, 469, 557, 658, 865, 875, 951
Hin1II	CATG	3 cut(s)	254, 506, 791
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	4 cut(s)	107, 630, 771, 823
HphI	GGTGA	4 cut(s)	65, 532, 853, 944
Hpy166II	GTNNAC	2 cut(s)	6, 827
Hpy188I	TCNGA	6 cut(s)	70, 209, 391, 592, 618, 1007
Hpy188III	TCNNGA	7 cut(s)	272, 339, 404, 820, 851, 896, 972
Hpy8I	GTNNAC	2 cut(s)	6, 827
HpyAV	CCTTC	3 cut(s)	356, 447, 547
HpyCH4III	ACNGT	1 cut(s)	709
HpyCH4V	TGCA	3 cut(s)	574, 718, 1021
HpyF10VI	GCNNNNNNNGC	1 cut(s)	228
HpyF3I	CTNAG	6 cut(s)	39, 177, 206, 218, 388, 615
Hsp92II	CATG	3 cut(s)	254, 506, 791
Ksp22I	TGATCA	1 cut(s)	661
KspI	CCGCGG	1 cut(s)	647
Kzo9I	GATC	4 cut(s)	445, 607, 661, 892
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	3 cut(s)	218, 277, 524
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	339
MaeIII	GTNAC	2 cut(s)	53, 841
MalI	GATC	4 cut(s)	447, 609, 663, 894
MboI	GATC	4 cut(s)	445, 607, 661, 892
MboII	GAAGA	6 cut(s)	102, 145, 332, 419, 455, 731
MfeI	CAATTG	1 cut(s)	168
MflI	RGATCY	1 cut(s)	892
MlsI	TGGCCA	1 cut(s)	469
MluCI	AATT	8 cut(s)	21, 119, 168, 299, 345, 399, 423, 568
MluNI	TGGCCA	1 cut(s)	469
MlyI	GAGTC	3 cut(s)	116, 780, 832
MnlI	CCTC	6 cut(s)	34, 76, 367, 727, 855, 1003
Mox20I	TGGCCA	1 cut(s)	469
MroXI	GAANNNNTTC	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	469
MseI	TTAA	5 cut(s)	546, 704, 882, 989, 1033
MslI	CAYNNNNRTG	1 cut(s)	690
Msp20I	TGGCCA	1 cut(s)	469
MspA1I	CMGCKG	1 cut(s)	646
MspR9I	CCNGG	1 cut(s)	239
MunI	CAATTG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	2 cut(s)	285, 646
MwoI	GCNNNNNNNGC	1 cut(s)	228
NdeII	GATC	4 cut(s)	445, 607, 661, 892
NlaIII	CATG	3 cut(s)	254, 506, 791
NmuCI	GTSAC	2 cut(s)	53, 841
NspI	RCATGY	1 cut(s)	791
PceI	AGGCCT	1 cut(s)	658
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	630
PkrI	GCNGC	3 cut(s)	233, 292, 514
PleI	GAGTC	3 cut(s)	115, 779, 831
PpsI	GAGTC	3 cut(s)	115, 779, 831
Psp6I	CCWGG	1 cut(s)	237
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	237
PspPI	GGNCC	2 cut(s)	411, 911
PstNI	CAGNNNCTG	1 cut(s)	896
PsuI	RGATCY	1 cut(s)	892
RsaI	GTAC	3 cut(s)	282, 501, 888
RsaNI	GTAC	3 cut(s)	281, 500, 887
RseI	CAYNNNNRTG	1 cut(s)	690
SacII	CCGCGG	1 cut(s)	647
SaqAI	TTAA	5 cut(s)	546, 704, 882, 989, 1033
SatI	GCNGC	3 cut(s)	232, 291, 513
Sau3AI	GATC	4 cut(s)	445, 607, 661, 892
Sau96I	GGNCC	2 cut(s)	411, 911
SchI	GAGTC	3 cut(s)	116, 780, 832
ScrFI	CCNGG	1 cut(s)	239
SfaNI	GCATC	1 cut(s)	367
SfcI	CTRYAG	1 cut(s)	102
Sfr303I	CCGCGG	1 cut(s)	647
SgrBI	CCGCGG	1 cut(s)	647
SinI	GGWCC	2 cut(s)	411, 911
SmiMI	CAYNNNNRTG	1 cut(s)	690
Sse9I	AATT	8 cut(s)	21, 119, 168, 299, 345, 399, 423, 568
SseBI	AGGCCT	1 cut(s)	658
SsiI	CCGC	5 cut(s)	33, 418, 644, 646, 830
SspMI	CTAG	1 cut(s)	339
StuI	AGGCCT	1 cut(s)	658
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	952
TaaI	ACNGT	1 cut(s)	709
TasI	AATT	8 cut(s)	21, 119, 168, 299, 345, 399, 423, 568
TatI	WGTACW	1 cut(s)	499
TfiI	GAWTC	1 cut(s)	630
Tru1I	TTAA	5 cut(s)	546, 704, 882, 989, 1033
Tru9I	TTAA	5 cut(s)	546, 704, 882, 989, 1033
TscAI	CASTG	2 cut(s)	321, 921
TseFI	GTSAC	2 cut(s)	53, 841
TseI	GCWGC	3 cut(s)	231, 290, 512
Tsp45I	GTSAC	2 cut(s)	53, 841
TspRI	CASTG	2 cut(s)	321, 921
VpaK11BI	GGWCC	2 cut(s)	411, 911
XapI	RAATTY	4 cut(s)	21, 345, 399, 568
XbaI	TCTAGA	1 cut(s)	338
XceI	RCATGY	1 cut(s)	791
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.