Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Forward (+)

1612208 .. 1619358

Gene Structure 7151 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG026600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCTCTCCTTCATGCTGATAATGACTCTGTGAAGTTGTCCATGAGTGTCCAAGAGATGAGCATCAAAGGTGAGGAACCTCCCCCTCAGTATATTGTTAAAGAAAGCAAGTTTGGAGCTATAGAGTCTTCCCCAGAGTTGGGTCAAATCCCCACCATTGATGTCAGTCTCTTCTCCCCATCATCAATTCATACCAAGGAAGCAGAGATCGAACTGAACAAACTCAAAATAGCTCTCAGCTCATCAGGCTGCATCCAGGCGGTTGGTCATGGGATATCAACTTCCTTTCTGGACAAGGTACGCGAAGCTGCGACGCAATTCTTTGAACTCCCAGTGGAAGACAAGGAAAAGTACTCCAGAGCTGTTCATGGTGGCTCTGAAGGGTATGGGAATGATGTCATTGTTTCAGAGAAGCAAGTTCTTGATTGGTCCTATCGCCTAACACTTCGAGTATTTCCTGAAGATCAAAGAAGGCTTAACCTTTGGCCAGAAAATCCAAATGATTTTGGAGAGGTTGTACATGAATATGCAACAAAGGTAAAGTTCATGATGGGGGTTCTGTTTAAGGCCATGGCGAAATCGTTGAATTTGGAAGAGAACAGCTTTTCAGATAAGCTGCTTGGAGAGAGAGCTCTGATGCAAGCAAGATTCAACTTCTATCCACCGTGTTCAAGATCTGATAAAGTTCTTGGTGTGAAGCCACATACAGATAGGTCAGGAGTGACGGTTTTGTTGCAAGACAAAGAAGTTGAAGGTCTTCAAGTTTTGGTAGATGGCAAATGGGTTAGAGTCCCCATTGTGCCTCATGCTATAGTTGTTAACCTTGGCGATCAGATGCAGATTATGAGTAATGGTATATTCAAGAGCCCAATGCACAGGGTTGTGACAAATCCAGAAAGGATGAGGCTATCTGTGGCCTTGTTTAATGAACCAGATCCTGAAACTGAGATTAGTCCAGTGGAGAAACTGATAGATGAGACAAGGCCAAGAGTATACAAAAATGTTAAGAATTATGGTCGCATCAACTACGAATGCTATCAGAGAGGAGAAATAGCACTCGAAACAGTGAAGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

358

Amino Acids

40.35

Weight (kDa)

5.74

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	50 - 165	1.2e-21	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	216 - 311	1.5e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	993
AccII	CGCG	1 cut(s)	303
AciI	CCGC	1 cut(s)	260
AclWI	GGATC	1 cut(s)	929
AcoI	YGGCCR	1 cut(s)	485
AcsI	RAATTY	1 cut(s)	586
AcuI	CTGAAG	2 cut(s)	399, 480
AfaI	GTAC	3 cut(s)	300, 353, 519
AfiI	CCNNNNNNNGG	2 cut(s)	139, 140
AgsI	TTSAA	7 cut(s)	326, 586, 652, 672, 752, 761, 862
AjnI	CCWGG	1 cut(s)	255
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AluBI	AGCT	8 cut(s)	119, 233, 240, 308, 362, 603, 616, 632
AluI	AGCT	8 cut(s)	119, 233, 240, 308, 362, 603, 616, 632
Alw21I	GWGCWC	1 cut(s)	634
Alw26I	GTCTC	2 cut(s)	173, 971
AlwI	GGATC	1 cut(s)	929
AlwNI	CAGNNNCTG	1 cut(s)	938
AoxI	GGCC	4 cut(s)	485, 567, 915, 983
ApeKI	GCWGC	3 cut(s)	249, 308, 616
ApoI	RAATTY	1 cut(s)	586
Asp700I	GAANNNNTTC	1 cut(s)	756
AspS9I	GGNCC	1 cut(s)	429
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	429
BalI	TGGCCA	1 cut(s)	487
BanII	GRGCYC	2 cut(s)	634, 869
BbsI	GAAGAC	3 cut(s)	120, 345, 749
Bbv12I	GWGCWC	1 cut(s)	634
BbvI	GCAGC	3 cut(s)	236, 295, 603
BccI	CCATC	3 cut(s)	187, 544, 767
BciT130I	CCWGG	1 cut(s)	257
BcoDI	GTCTC	2 cut(s)	173, 971
BfmI	CTRYAG	2 cut(s)	120, 810
BglII	AGATCT	2 cut(s)	674, 1071
BisI	GCNGC	3 cut(s)	250, 309, 617
BlsI	GCNGC	3 cut(s)	251, 310, 618
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	429
BmgT120I	GGNCC	1 cut(s)	429
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	257
BmrI	ACTGGG	1 cut(s)	326
BmsI	GCATC	5 cut(s)	72, 261, 627, 825, 1029
BmuI	ACTGGG	1 cut(s)	326
BpiI	GAAGAC	3 cut(s)	120, 345, 749
BpmI	CTGGAG	1 cut(s)	340
BsaBI	GATNNNNATC	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	195, 570, 823
BsaXI	ACNNNNNCTCC	4 cut(s)	501, 531, 711, 741
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 140
Bse1I	ACTGG	2 cut(s)	332, 956
Bse8I	GATNNNNATC	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	3 cut(s)	195, 570, 823
BseGI	GGATG	2 cut(s)	252, 906
BseJI	GATNNNNATC	1 cut(s)	62
BseLI	CCNNNNNNNGG	2 cut(s)	139, 140
BseMII	CTCAG	3 cut(s)	101, 250, 936
BseNI	ACTGG	2 cut(s)	332, 956
BseRI	GAGGAG	1 cut(s)	1059
BseXI	GCAGC	3 cut(s)	236, 295, 603
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	4 cut(s)	487, 569, 917, 985
BsiHKAI	GWGCWC	1 cut(s)	634
BslFI	GGGAC	1 cut(s)	776
BslI	CCNNNNNNNGG	2 cut(s)	139, 140
BsmAI	GTCTC	2 cut(s)	173, 971
BsmFI	GGGAC	1 cut(s)	776
BsmI	GAATGC	1 cut(s)	1037
BsnI	GGCC	4 cut(s)	487, 569, 917, 985
Bsp1286I	GDGCHC	2 cut(s)	634, 869
Bsp1407I	TGTACA	1 cut(s)	517
Bsp143I	GATC	6 cut(s)	207, 463, 674, 829, 934, 1071
Bsp19I	CCATGG	1 cut(s)	570
BspACI	CCGC	1 cut(s)	260
BspANI	GGCC	4 cut(s)	487, 569, 917, 985
BspCNI	CTCAG	3 cut(s)	100, 249, 937
BspFNI	CGCG	1 cut(s)	303
BspHI	TCATGA	1 cut(s)	546
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	929
BsrGI	TGTACA	1 cut(s)	517
BsrI	ACTGG	2 cut(s)	332, 956
BssECI	CCNNGG	3 cut(s)	195, 570, 823
BssMI	GATC	6 cut(s)	207, 463, 674, 829, 934, 1071
BssNAI	GTATAC	1 cut(s)	994
BssT1I	CCWWGG	3 cut(s)	195, 570, 823
Bst1107I	GTATAC	1 cut(s)	994
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	3 cut(s)	666, 727, 1066
Bst6I	CTCTTC	2 cut(s)	176, 588
BstAUI	TGTACA	1 cut(s)	517
BstC8I	GCNNGC	1 cut(s)	642
BstDEI	CTNAG	3 cut(s)	87, 236, 945
BstDSI	CCRYGG	1 cut(s)	570
BstF5I	GGATG	2 cut(s)	252, 906
BstFNI	CGCG	1 cut(s)	303
BstKTI	GATC	6 cut(s)	210, 466, 677, 832, 937, 1074
BstMAI	GTCTC	2 cut(s)	173, 971
BstMBI	GATC	6 cut(s)	207, 463, 674, 829, 934, 1071
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	2 cut(s)	120, 810
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	3 cut(s)	236, 295, 603
BstV2I	GAAGAC	3 cut(s)	120, 345, 749
BstX2I	RGATCY	3 cut(s)	674, 934, 1071
BstXI	CCANNNNNNTGG	1 cut(s)	263
BstYI	RGATCY	3 cut(s)	674, 934, 1071
BstZ17I	GTATAC	1 cut(s)	994
BsuRI	GGCC	4 cut(s)	487, 569, 917, 985
BtgI	CCRYGG	1 cut(s)	570
BtsCI	GGATG	2 cut(s)	252, 906
BtsIMutI	CAGTG	3 cut(s)	339, 963, 1071
Cac8I	GCNNGC	1 cut(s)	642
CaiI	CAGNNNCTG	1 cut(s)	938
CciI	TCATGA	1 cut(s)	546
Cfr13I	GGNCC	1 cut(s)	429
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	3 cut(s)	299, 352, 518
CviAII	CATG	8 cut(s)	14, 43, 269, 368, 521, 547, 571, 806
CviQI	GTAC	3 cut(s)	299, 352, 518
DdeI	CTNAG	3 cut(s)	87, 236, 945
DpnI	GATC	6 cut(s)	209, 465, 676, 831, 936, 1073
DpnII	GATC	6 cut(s)	207, 463, 674, 829, 934, 1071
EaeI	YGGCCR	1 cut(s)	485
Eam1104I	CTCTTC	2 cut(s)	176, 588
EarI	CTCTTC	2 cut(s)	176, 588
Ecl136II	GAGCTC	1 cut(s)	632
Eco130I	CCWWGG	3 cut(s)	195, 570, 823
Eco24I	GRGCYC	2 cut(s)	634, 869
Eco32I	GATATC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	429
Eco53kI	GAGCTC	1 cut(s)	632
Eco57I	CTGAAG	2 cut(s)	399, 480
EcoICRI	GAGCTC	1 cut(s)	632
EcoRII	CCWGG	1 cut(s)	255
EcoRV	GATATC	1 cut(s)	276
EcoT14I	CCWWGG	3 cut(s)	195, 570, 823
EcoT38I	GRGCYC	2 cut(s)	634, 869
ErhI	CCWWGG	3 cut(s)	195, 570, 823
FaeI	CATG	8 cut(s)	17, 46, 272, 371, 524, 550, 574, 809
FaqI	GGGAC	1 cut(s)	776
FatI	CATG	8 cut(s)	13, 42, 268, 367, 520, 546, 570, 805
FblI	GTMKAC	1 cut(s)	993
Fnu4HI	GCNGC	3 cut(s)	250, 309, 617
FokI	GGATG	2 cut(s)	239, 913
FriOI	GRGCYC	2 cut(s)	634, 869
Fsp4HI	GCNGC	3 cut(s)	250, 309, 617
GluI	GCNGC	3 cut(s)	250, 309, 617
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	4 cut(s)	487, 569, 917, 985
HgaI	GACGC	1 cut(s)	322
Hin1II	CATG	8 cut(s)	17, 46, 272, 371, 524, 550, 574, 809
HincII	GTYRAC	1 cut(s)	820
HindII	GTYRAC	1 cut(s)	820
HinfI	GANTC	4 cut(s)	26, 125, 648, 789
HpaI	GTTAAC	1 cut(s)	820
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	820, 994
Hpy188I	TCNGA	7 cut(s)	379, 409, 610, 636, 679, 834, 1041
Hpy8I	GTNNAC	2 cut(s)	820, 994
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	4 cut(s)	20, 374, 465, 746
HpyCH4III	ACNGT	3 cut(s)	666, 727, 1066
HpyCH4V	TGCA	6 cut(s)	252, 530, 640, 736, 838, 874
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpyF3I	CTNAG	3 cut(s)	87, 236, 945
Hsp92II	CATG	8 cut(s)	17, 46, 272, 371, 524, 550, 574, 809
KspAI	GTTAAC	1 cut(s)	820
Kzo9I	GATC	6 cut(s)	207, 463, 674, 829, 934, 1071
LmnI	GCTCC	1 cut(s)	116
Lsp1109I	GCAGC	3 cut(s)	236, 295, 603
LweI	GCATC	5 cut(s)	72, 261, 627, 825, 1029
MaeIII	GTNAC	2 cut(s)	721, 883
MalI	GATC	6 cut(s)	209, 465, 676, 831, 936, 1073
MboI	GATC	6 cut(s)	207, 463, 674, 829, 934, 1071
MboII	GAAGA	6 cut(s)	120, 163, 350, 473, 605, 749
MflI	RGATCY	3 cut(s)	674, 934, 1071
MhlI	GDGCHC	2 cut(s)	634, 869
MlsI	TGGCCA	1 cut(s)	487
MluCI	AATT	4 cut(s)	186, 317, 586, 1009
MluNI	TGGCCA	1 cut(s)	487
MlyI	GAGTC	3 cut(s)	20, 134, 798
MnlI	CCTC	7 cut(s)	67, 90, 96, 505, 813, 897, 1037
Mox20I	TGGCCA	1 cut(s)	487
MroXI	GAANNNNTTC	1 cut(s)	756
MscI	TGGCCA	1 cut(s)	487
MseI	TTAA	6 cut(s)	99, 477, 564, 819, 924, 1005
MslI	CAYNNNNRTG	1 cut(s)	525
Msp20I	TGGCCA	1 cut(s)	487
MspR9I	CCNGG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	1037
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	246
NcoI	CCATGG	1 cut(s)	570
NdeII	GATC	6 cut(s)	207, 463, 674, 829, 934, 1071
NlaIII	CATG	8 cut(s)	17, 46, 272, 371, 524, 550, 574, 809
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	2 cut(s)	721, 883
PagI	TCATGA	1 cut(s)	546
PctI	GAATGC	1 cut(s)	1037
PdmI	GAANNNNTTC	1 cut(s)	756
PfeI	GAWTC	1 cut(s)	648
PkrI	GCNGC	3 cut(s)	251, 310, 618
PleI	GAGTC	3 cut(s)	20, 133, 797
PpsI	GAGTC	3 cut(s)	20, 133, 797
Psp124BI	GAGCTC	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	429
PstNI	CAGNNNCTG	1 cut(s)	938
PsuI	RGATCY	3 cut(s)	674, 934, 1071
RsaI	GTAC	3 cut(s)	300, 353, 519
RsaNI	GTAC	3 cut(s)	299, 352, 518
RseI	CAYNNNNRTG	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	634
SaqAI	TTAA	6 cut(s)	99, 477, 564, 819, 924, 1005
SatI	GCNGC	3 cut(s)	250, 309, 617
Sau3AI	GATC	6 cut(s)	207, 463, 674, 829, 934, 1071
Sau96I	GGNCC	1 cut(s)	429
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	3 cut(s)	20, 134, 798
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	2 cut(s)	634, 869
SfaNI	GCATC	5 cut(s)	72, 261, 627, 825, 1029
SfcI	CTRYAG	2 cut(s)	120, 810
SinI	GGWCC	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	525
Sse9I	AATT	4 cut(s)	186, 317, 586, 1009
SsiI	CCGC	1 cut(s)	260
SstI	GAGCTC	1 cut(s)	634
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	3 cut(s)	195, 570, 823
TaaI	ACNGT	3 cut(s)	666, 727, 1066
TaqI	TCGA	3 cut(s)	210, 448, 1059
TasI	AATT	4 cut(s)	186, 317, 586, 1009
TatI	WGTACW	2 cut(s)	351, 517
TfiI	GAWTC	1 cut(s)	648
Tru1I	TTAA	6 cut(s)	99, 477, 564, 819, 924, 1005
Tru9I	TTAA	6 cut(s)	99, 477, 564, 819, 924, 1005
TscAI	CASTG	3 cut(s)	339, 963, 1071
TseFI	GTSAC	2 cut(s)	721, 883
TseI	GCWGC	3 cut(s)	249, 308, 616
Tsp45I	GTSAC	2 cut(s)	721, 883
TspDTI	ATGAA	5 cut(s)	179, 356, 535, 537, 942
TspRI	CASTG	3 cut(s)	339, 963, 1071
VpaK11BI	GGWCC	1 cut(s)	429
XapI	RAATTY	1 cut(s)	586
XmiI	GTMKAC	1 cut(s)	993
XmnI	GAANNNNTTC	1 cut(s)	756
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.