Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000239.1

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Forward (+)

42053 .. 43367

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000239.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atgtccatcaatggtgatgaaccactccctgagtatattgttgaacaaggcatctttggagctatagattcttccccatcactaggtcagatccccatctttgatatcaatttcttctccacaacatcactcaattctaagcaagcgaagaacgaacttgagaaacttagatcagcactaagctcatcaggctgcttccaggcggttggtcatgggatttcaagttcctttcttgacaaggtacgcgaagctggaacacagttctttgcacttccagtggacgagaagcaaaagtacttagaggcagctcatgtcgccgggaatgatgtcaaagtcacagagaagcaagttcttgactggtgctaccgtctaactcttcgagtattcccagaagataaaagaagccttaatctttggccagaaagtccaaacaactttagagaggtgctagatgaatatgcaacaaagataaagttgatgatgggtgttctctttaaggccatggcaaaatctttgaatttggaagagaaaagctttgcacaccagctgtttggcgagcaagctctgatgacagcaagattcaacttctatccgccgtgttcaagagccgatcaggtgtttggtgtgaagccacatacagatgggtcaggagtgacagttttgttgcaagacaaagaagtacaaggtcttcaagttttggtagatggcaaatgggttagagtccccattgtgcctcatgcactagtcgttaatctcggggatcagatgcagattatgagtaatggaatattcaagagtgcaatgcacagggtggtgacaaatacagaaaagttgagactatctgtagccatgtttaacttaccagctcctgaaactgagattggtccattggtgagcttgatacatcatgaaacaaggccaaggttgtacaaaaatgtcaagaactacggtcgcatcaactacaaatgctaccagagaggagaaatagcacttgaaacagtaaagatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

336

Amino Acids

37.76

Weight (kDa)

7.69

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	246
AciI	CCGC	2 cut(s)	203, 593
AclWI	GGATC	2 cut(s)	85, 768
AcoI	YGGCCR	1 cut(s)	416
AcsI	RAATTY	1 cut(s)	517
AdeI	CACNNNGTG	1 cut(s)	811
AfaI	GTAC	4 cut(s)	243, 296, 681, 929
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	8 cut(s)	44, 222, 517, 583, 603, 692, 793, 995
AhlI	ACTAGT	1 cut(s)	742
AjnI	CCWGG	1 cut(s)	198
AjuI	GAANNNNNNNTTGG	2 cut(s)	864, 896
AloI	GAACNNNNNNTCC	2 cut(s)	208, 240
AluBI	AGCT	9 cut(s)	62, 183, 251, 308, 534, 547, 563, 866, 897
AluI	AGCT	9 cut(s)	62, 183, 251, 308, 534, 547, 563, 866, 897
Alw26I	GTCTC	1 cut(s)	829
AlwI	GGATC	2 cut(s)	85, 768
AlwNI	CAGNNNCTG	1 cut(s)	869
Ama87I	CYCGRG	1 cut(s)	755
AoxI	GGCC	3 cut(s)	416, 498, 917
ApeKI	GCWGC	2 cut(s)	192, 305
ApoI	RAATTY	1 cut(s)	517
AspS9I	GGNCC	1 cut(s)	884
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	3 cut(s)	26, 826, 904
AvaI	CYCGRG	1 cut(s)	755
AvaII	GGWCC	1 cut(s)	884
BalI	TGGCCA	1 cut(s)	418
BarI	GAAGNNNNNNTAC	4 cut(s)	278, 310, 672, 704
BbsI	GAAGAC	1 cut(s)	680
BbvI	GCAGC	2 cut(s)	179, 317
BccI	CCATC	6 cut(s)	14, 85, 104, 475, 635, 698
BceAI	ACGGC	1 cut(s)	580
BciT130I	CCWGG	1 cut(s)	200
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	829
BcuI	ACTAGT	1 cut(s)	742
BfaI	CTAG	3 cut(s)	83, 449, 743
BfmI	CTRYAG	2 cut(s)	63, 843
BisI	GCNGC	2 cut(s)	193, 306
BlsI	GCNGC	2 cut(s)	194, 307
BmcAI	AGTACT	1 cut(s)	296
Bme1390I	CCNGG	2 cut(s)	200, 319
Bme18I	GGWCC	1 cut(s)	884
BmeT110I	CYCGRG	1 cut(s)	755
BmgT120I	GGNCC	1 cut(s)	884
BmrFI	CCNGG	2 cut(s)	200, 319
BmsI	GCATC	3 cut(s)	60, 756, 963
BpiI	GAAGAC	1 cut(s)	680
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	319
BsaBI	GATNNNNATC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	501, 920
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	2 cut(s)	275, 362
Bse3DI	GCAATG	1 cut(s)	807
Bse8I	GATNNNNATC	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	501, 920
BseJI	GATNNNNATC	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	2 cut(s)	21, 867
BseNI	ACTGG	2 cut(s)	275, 362
BseRI	GAGGAG	1 cut(s)	993
BseXI	GCAGC	2 cut(s)	179, 317
Bsh1236I	CGCG	1 cut(s)	246
Bsh1285I	CGRYCG	1 cut(s)	952
BshFI	GGCC	3 cut(s)	418, 500, 919
BsiEI	CGRYCG	1 cut(s)	952
BsiHKCI	CYCGRG	1 cut(s)	755
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	707
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	829
BsmFI	GGGAC	1 cut(s)	707
BsnI	GGCC	3 cut(s)	418, 500, 919
BsoBI	CYCGRG	1 cut(s)	755
Bsp1407I	TGTACA	1 cut(s)	927
Bsp143I	GATC	4 cut(s)	90, 170, 610, 760
Bsp19I	CCATGG	1 cut(s)	501
BspACI	CCGC	2 cut(s)	203, 593
BspANI	GGCC	3 cut(s)	418, 500, 919
BspCNI	CTCAG	2 cut(s)	22, 868
BspFNI	CGCG	1 cut(s)	246
BspHI	TCATGA	1 cut(s)	907
BspPI	GGATC	2 cut(s)	85, 768
BsrDI	GCAATG	1 cut(s)	807
BsrGI	TGTACA	1 cut(s)	927
BsrI	ACTGG	2 cut(s)	275, 362
BssECI	CCNNGG	2 cut(s)	501, 920
BssMI	GATC	4 cut(s)	90, 170, 610, 760
BssT1I	CCWWGG	2 cut(s)	501, 920
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	5 cut(s)	261, 368, 658, 950, 1000
Bst6I	CTCTTC	2 cut(s)	381, 519
BstAUI	TGTACA	1 cut(s)	927
BstC8I	GCNNGC	3 cut(s)	144, 557, 561
BstDEI	CTNAG	6 cut(s)	30, 138, 167, 179, 298, 876
BstDSI	CCRYGG	1 cut(s)	501
BstFNI	CGCG	1 cut(s)	246
BstKTI	GATC	4 cut(s)	93, 173, 613, 763
BstMAI	GTCTC	1 cut(s)	829
BstMBI	GATC	4 cut(s)	90, 170, 610, 760
BstMCI	CGRYCG	1 cut(s)	952
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 314
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	2 cut(s)	198, 317
BstSFI	CTRYAG	2 cut(s)	63, 843
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	179, 317
BstV2I	GAAGAC	1 cut(s)	680
BstX2I	RGATCY	1 cut(s)	90
BstXI	CCANNNNNNTGG	2 cut(s)	206, 551
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	3 cut(s)	418, 500, 919
BtgI	CCRYGG	1 cut(s)	501
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	3 cut(s)	144, 557, 561
CaiI	CAGNNNCTG	1 cut(s)	869
CciI	TCATGA	1 cut(s)	907
Cfr13I	GGNCC	1 cut(s)	884
Csp6I	GTAC	4 cut(s)	242, 295, 680, 928
CviAII	CATG	6 cut(s)	212, 311, 502, 737, 850, 908
CviQI	GTAC	4 cut(s)	242, 295, 680, 928
DdeI	CTNAG	6 cut(s)	30, 138, 167, 179, 298, 876
DpnI	GATC	4 cut(s)	92, 172, 612, 762
DpnII	GATC	4 cut(s)	90, 170, 610, 760
DraIII	CACNNNGTG	1 cut(s)	811
EaeI	YGGCCR	1 cut(s)	416
Eam1104I	CTCTTC	2 cut(s)	381, 519
EarI	CTCTTC	2 cut(s)	381, 519
EciI	GGCGGA	1 cut(s)	582
Eco130I	CCWWGG	2 cut(s)	501, 920
Eco32I	GATATC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	884
Eco88I	CYCGRG	1 cut(s)	755
EcoRII	CCWGG	1 cut(s)	198
EcoRV	GATATC	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	501, 920
ErhI	CCWWGG	2 cut(s)	501, 920
FaeI	CATG	6 cut(s)	215, 314, 505, 740, 853, 911
FaqI	GGGAC	1 cut(s)	707
FatI	CATG	6 cut(s)	211, 310, 501, 736, 849, 907
Fnu4HI	GCNGC	2 cut(s)	193, 306
Fsp4HI	GCNGC	2 cut(s)	193, 306
FspBI	CTAG	3 cut(s)	83, 449, 743
GluI	GCNGC	2 cut(s)	193, 306
HaeIII	GGCC	3 cut(s)	418, 500, 919
HapII	CCGG	1 cut(s)	318
Hin1II	CATG	6 cut(s)	215, 314, 505, 740, 853, 911
HindIII	AAGCTT	1 cut(s)	532
HinfI	GANTC	3 cut(s)	68, 579, 720
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	3 cut(s)	26, 826, 904
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	3 cut(s)	90, 567, 765
Hpy188III	TCNNGA	8 cut(s)	233, 353, 603, 648, 793, 869, 908, 940
Hpy8I	GTNNAC	1 cut(s)	280
HpyCH4III	ACNGT	5 cut(s)	261, 368, 658, 950, 1000
HpyCH4V	TGCA	8 cut(s)	269, 461, 539, 667, 740, 769, 800, 805
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 314
HpyF3I	CTNAG	6 cut(s)	30, 138, 167, 179, 298, 876
Hsp92II	CATG	6 cut(s)	215, 314, 505, 740, 853, 911
Kzo9I	GATC	4 cut(s)	90, 170, 610, 760
LmnI	GCTCC	2 cut(s)	59, 871
Lsp1109I	GCAGC	2 cut(s)	179, 317
LweI	GCATC	3 cut(s)	60, 756, 963
MaeI	CTAG	3 cut(s)	83, 449, 743
MaeIII	GTNAC	3 cut(s)	334, 652, 814
MalI	GATC	4 cut(s)	92, 172, 612, 762
MboI	GATC	4 cut(s)	90, 170, 610, 760
MboII	GAAGA	7 cut(s)	63, 106, 160, 368, 404, 536, 680
MflI	RGATCY	1 cut(s)	90
MlsI	TGGCCA	1 cut(s)	418
MluCI	AATT	3 cut(s)	109, 133, 517
MluNI	TGGCCA	1 cut(s)	418
MlyI	GAGTC	1 cut(s)	729
MnlI	CCTC	4 cut(s)	295, 436, 744, 971
Mox20I	TGGCCA	1 cut(s)	418
MscI	TGGCCA	1 cut(s)	418
MseI	TTAA	4 cut(s)	408, 495, 750, 855
MslI	CAYNNNNRTG	1 cut(s)	639
Msp20I	TGGCCA	1 cut(s)	418
MspA1I	CMGCKG	1 cut(s)	547
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	2 cut(s)	200, 319
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	189, 314
NciI	CCSGG	1 cut(s)	319
NcoI	CCATGG	1 cut(s)	501
NdeII	GATC	4 cut(s)	90, 170, 610, 760
NlaIII	CATG	6 cut(s)	215, 314, 505, 740, 853, 911
NmuCI	GTSAC	3 cut(s)	334, 652, 814
PagI	TCATGA	1 cut(s)	907
PfeI	GAWTC	2 cut(s)	68, 579
PkrI	GCNGC	2 cut(s)	194, 307
PleI	GAGTC	1 cut(s)	728
PpsI	GAGTC	1 cut(s)	728
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	884
PstNI	CAGNNNCTG	1 cut(s)	869
PsuI	RGATCY	1 cut(s)	90
PvuII	CAGCTG	1 cut(s)	547
RsaI	GTAC	4 cut(s)	243, 296, 681, 929
RsaNI	GTAC	4 cut(s)	242, 295, 680, 928
RseI	CAYNNNNRTG	1 cut(s)	639
SaqAI	TTAA	4 cut(s)	408, 495, 750, 855
SatI	GCNGC	2 cut(s)	193, 306
Sau3AI	GATC	4 cut(s)	90, 170, 610, 760
Sau96I	GGNCC	1 cut(s)	884
ScaI	AGTACT	1 cut(s)	296
SchI	GAGTC	1 cut(s)	729
ScrFI	CCNGG	2 cut(s)	200, 319
SfaNI	GCATC	3 cut(s)	60, 756, 963
SfcI	CTRYAG	2 cut(s)	63, 843
SinI	GGWCC	1 cut(s)	884
SmiMI	CAYNNNNRTG	1 cut(s)	639
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SpeI	ACTAGT	1 cut(s)	742
Sse9I	AATT	3 cut(s)	109, 133, 517
SsiI	CCGC	2 cut(s)	203, 593
SspI	AATATT	1 cut(s)	789
SspMI	CTAG	3 cut(s)	83, 449, 743
StyD4I	CCNGG	2 cut(s)	198, 317
StyI	CCWWGG	2 cut(s)	501, 920
TaaI	ACNGT	5 cut(s)	261, 368, 658, 950, 1000
TaqI	TCGA	1 cut(s)	379
TasI	AATT	3 cut(s)	109, 133, 517
TatI	WGTACW	3 cut(s)	294, 679, 927
TfiI	GAWTC	2 cut(s)	68, 579
Tru1I	TTAA	4 cut(s)	408, 495, 750, 855
Tru9I	TTAA	4 cut(s)	408, 495, 750, 855
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	3 cut(s)	334, 652, 814
TseI	GCWGC	2 cut(s)	192, 305
Tsp45I	GTSAC	3 cut(s)	334, 652, 814
TspDTI	ATGAA	3 cut(s)	33, 468, 924
TspRI	CASTG	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	884
XapI	RAATTY	1 cut(s)	517
XspI	CTAG	3 cut(s)	83, 449, 743
ZrmI	AGTACT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.