Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Forward (+)

56588790 .. 56590642

Gene Structure 1853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG379300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCACTGAGCTCATCAGGCTGCTTCCAGGCAATAGGTCATGGGATTTCAAGTTCCTTTCTGGACAAGATACGCGAAGCTGCGAAACAATTCTTTGAACTTCCAGTGGAAGAGAAGCAGAGATACTCCAGAGAAATTTATGGTGGCCGTGAAGGATATGGAGTGGATGCCATTGTCTCAGAGAAGCAAGTTCGCGATTGGTCATACCGCCTAATTCTGCGTGTATTCCCTGAAGATCAAAGAAGGCTCAATCTTTGGCCAGAAAATCCAAATGATTTTGGAGAAGTTGTACATGAATATGCAATAGAGGTGAAGTTTATGATGGATGTTCTGTTTAAGGCCATGGCAAAATCTTTGAATTTGGAAGAGAACAGCTTTTCGCATAAGCTGTCTGGAGAGCAAGCTCAGATGATAGCAAGATTCAACTTCTTTCCGACGTGTTCAAGACCCGATCAGGTGTTCGGTGTGAAGACACATACAGATGGGACAGGATTAACTGTTCTGTTGCAGGACAAAGAAGTAGAGGGTCTTCAAGTTTTGGTGGATGGTAAATGGGTTAGAGTCGCCATTGTGCCACATGCCATTTTTGTTAATCTTGGTGCTCAAATGCAGATTATGAGTAATAATGACATATTCAAGAGCCCACTGCACAGGGTGGTGACAAATCCAGAAAGACTGAGGCTATCTGTGGCCTTGCTTAATGTACCAGATCCTGAAACCGAGATTGGTCCAGTGGAGAAACTGATAGATGAGACAAGGCCAAGGATATACAAAAATGTCAAGAACTATTCCAGTATTAACTATAAGTGCTTTCAGAGAGGAGAAGTAGCACTTGAAACATTAAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

283

Amino Acids

32.33

Weight (kDa)

6.34

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	2 - 89	3.7e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	138 - 232	4e-25	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	75, 195
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	1 cut(s)	704
AcoI	YGGCCR	2 cut(s)	145, 257
AcsI	RAATTY	2 cut(s)	135, 358
AcuI	CTGAAG	1 cut(s)	252
AdeI	CACNNNGTG	1 cut(s)	655
AfaI	GTAC	2 cut(s)	291, 705
AflIII	ACRYGT	1 cut(s)	437
AgsI	TTSAA	8 cut(s)	51, 98, 358, 424, 444, 533, 637, 836
AjiI	CACGTC	1 cut(s)	438
AjnI	CCWGG	1 cut(s)	27
AjuI	GAANNNNNNNTTGG	2 cut(s)	708, 740
AloI	GAACNNNNNNTCC	4 cut(s)	37, 69, 483, 515
AluBI	AGCT	5 cut(s)	12, 80, 375, 388, 404
AluI	AGCT	5 cut(s)	12, 80, 375, 388, 404
Alw21I	GWGCWC	2 cut(s)	14, 604
Alw26I	GTCTC	2 cut(s)	181, 746
AlwI	GGATC	1 cut(s)	704
AlwNI	CAGNNNCTG	1 cut(s)	713
AoxI	GGCC	5 cut(s)	145, 257, 339, 690, 758
ApeKI	GCWGC	2 cut(s)	21, 80
ApoI	RAATTY	2 cut(s)	135, 358
Asp700I	GAANNNNTTC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	728
AsuHPI	GGTGA	2 cut(s)	322, 670
AvaII	GGWCC	1 cut(s)	728
BalI	TGGCCA	1 cut(s)	259
BanII	GRGCYC	2 cut(s)	14, 644
BarI	GAAGNNNNNNTAC	4 cut(s)	107, 139, 513, 545
BbsI	GAAGAC	2 cut(s)	476, 521
Bbv12I	GWGCWC	2 cut(s)	14, 604
BbvI	GCAGC	2 cut(s)	8, 67
BccI	CCATC	3 cut(s)	316, 476, 539
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	181, 746
BisI	GCNGC	2 cut(s)	22, 81
BlsI	GCNGC	2 cut(s)	23, 82
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	728
BmgBI	CACGTC	1 cut(s)	438
BmgT120I	GGNCC	1 cut(s)	728
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	157
BpiI	GAAGAC	2 cut(s)	476, 521
BpmI	CTGGAG	2 cut(s)	112, 414
BsaJI	CCNNGG	2 cut(s)	342, 761
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bse1I	ACTGG	3 cut(s)	104, 731, 792
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	342, 761
BseGI	GGATG	3 cut(s)	172, 331, 550
BseMII	CTCAG	3 cut(s)	192, 419, 668
BseNI	ACTGG	3 cut(s)	104, 731, 792
BseRI	GAGGAG	1 cut(s)	834
BseXI	GCAGC	2 cut(s)	8, 67
BsgI	GTGCAG	1 cut(s)	632
Bsh1236I	CGCG	2 cut(s)	75, 195
BshFI	GGCC	5 cut(s)	147, 259, 341, 692, 760
BsiHKAI	GWGCWC	2 cut(s)	14, 604
BslFI	GGGAC	1 cut(s)	499
BsmAI	GTCTC	2 cut(s)	181, 746
BsmFI	GGGAC	1 cut(s)	499
BsnI	GGCC	5 cut(s)	147, 259, 341, 692, 760
Bsp1286I	GDGCHC	3 cut(s)	14, 604, 644
Bsp1407I	TGTACA	1 cut(s)	289
Bsp143I	GATC	3 cut(s)	235, 451, 709
Bsp19I	CCATGG	1 cut(s)	342
Bsp68I	TCGCGA	1 cut(s)	195
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	5 cut(s)	147, 259, 341, 692, 760
BspCNI	CTCAG	3 cut(s)	191, 418, 669
BspFNI	CGCG	2 cut(s)	75, 195
BspPI	GGATC	1 cut(s)	704
BsrGI	TGTACA	1 cut(s)	289
BsrI	ACTGG	3 cut(s)	104, 731, 792
BssECI	CCNNGG	2 cut(s)	342, 761
BssMI	GATC	3 cut(s)	235, 451, 709
BssT1I	CCWWGG	2 cut(s)	342, 761
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	499
Bst6I	CTCTTC	2 cut(s)	105, 360
BstAUI	TGTACA	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	4 cut(s)	8, 178, 405, 677
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	3 cut(s)	172, 331, 550
BstFNI	CGCG	2 cut(s)	75, 195
BstKTI	GATC	3 cut(s)	238, 454, 712
BstMAI	GTCTC	2 cut(s)	181, 746
BstMBI	GATC	3 cut(s)	235, 451, 709
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstNI	CCWGG	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	581
BstSCI	CCNGG	1 cut(s)	27
BstUI	CGCG	2 cut(s)	75, 195
BstV1I	GCAGC	2 cut(s)	8, 67
BstV2I	GAAGAC	2 cut(s)	476, 521
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BsuRI	GGCC	5 cut(s)	147, 259, 341, 692, 760
BtgI	CCRYGG	1 cut(s)	342
BtrI	CACGTC	1 cut(s)	438
BtsCI	GGATG	3 cut(s)	172, 331, 550
BtsI	GCAGTG	1 cut(s)	644
BtsIMutI	CAGTG	4 cut(s)	5, 111, 644, 738
BtuMI	TCGCGA	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	402
CaiI	CAGNNNCTG	1 cut(s)	713
Cfr13I	GGNCC	1 cut(s)	728
Csp6I	GTAC	2 cut(s)	290, 704
CviAII	CATG	4 cut(s)	41, 293, 343, 578
CviQI	GTAC	2 cut(s)	290, 704
DdeI	CTNAG	4 cut(s)	8, 178, 405, 677
DpnI	GATC	3 cut(s)	237, 453, 711
DpnII	GATC	3 cut(s)	235, 451, 709
DraIII	CACNNNGTG	1 cut(s)	655
EaeI	YGGCCR	2 cut(s)	145, 257
Eam1104I	CTCTTC	2 cut(s)	105, 360
EarI	CTCTTC	2 cut(s)	105, 360
Ecl136II	GAGCTC	1 cut(s)	12
Eco130I	CCWWGG	2 cut(s)	342, 761
Eco24I	GRGCYC	2 cut(s)	14, 644
Eco47I	GGWCC	1 cut(s)	728
Eco53kI	GAGCTC	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	2 cut(s)	342, 761
EcoT38I	GRGCYC	2 cut(s)	14, 644
ErhI	CCWWGG	2 cut(s)	342, 761
FaeI	CATG	4 cut(s)	44, 296, 346, 581
FalI	AAGNNNNNCTT	2 cut(s)	816, 848
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	4 cut(s)	40, 292, 342, 577
Fnu4HI	GCNGC	2 cut(s)	22, 81
FokI	GGATG	3 cut(s)	179, 338, 557
FriOI	GRGCYC	2 cut(s)	14, 644
Fsp4HI	GCNGC	2 cut(s)	22, 81
GluI	GCNGC	2 cut(s)	22, 81
GsuI	CTGGAG	2 cut(s)	112, 414
HaeIII	GGCC	5 cut(s)	147, 259, 341, 692, 760
Hin1II	CATG	4 cut(s)	44, 296, 346, 581
HinfI	GANTC	2 cut(s)	420, 561
HphI	GGTGA	2 cut(s)	322, 670
Hpy188I	TCNGA	4 cut(s)	181, 408, 435, 816
Hpy188III	TCNNGA	9 cut(s)	62, 129, 194, 393, 444, 637, 668, 713, 781
Hpy99I	CGWCG	1 cut(s)	439
HpyAV	CCTTC	2 cut(s)	146, 237
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	4 cut(s)	302, 508, 610, 649
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	4 cut(s)	8, 178, 405, 677
HpySE526I	ACGT	1 cut(s)	437
Hsp92II	CATG	4 cut(s)	44, 296, 346, 581
Kzo9I	GATC	3 cut(s)	235, 451, 709
Lsp1109I	GCAGC	2 cut(s)	8, 67
LweI	GCATC	1 cut(s)	157
MaeII	ACGT	1 cut(s)	437
MaeIII	GTNAC	1 cut(s)	658
MalI	GATC	3 cut(s)	237, 453, 711
MboI	GATC	3 cut(s)	235, 451, 709
MboII	GAAGA	5 cut(s)	122, 245, 377, 481, 521
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	3 cut(s)	14, 604, 644
MlsI	TGGCCA	1 cut(s)	259
MluCI	AATT	4 cut(s)	89, 135, 213, 358
MluNI	TGGCCA	1 cut(s)	259
MlyI	GAGTC	1 cut(s)	570
MmeI	TCCRAC	1 cut(s)	458
MnlI	CCTC	4 cut(s)	301, 517, 672, 812
Mox20I	TGGCCA	1 cut(s)	259
MroXI	GAANNNNTTC	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	259
MseI	TTAA	6 cut(s)	336, 494, 591, 699, 798, 842
MslI	CAYNNNNRTG	2 cut(s)	297, 480
Msp20I	TGGCCA	1 cut(s)	259
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MvnI	CGCG	2 cut(s)	75, 195
MwoI	GCNNNNNNNGC	1 cut(s)	18
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	3 cut(s)	235, 451, 709
NlaIII	CATG	4 cut(s)	44, 296, 346, 581
NmuCI	GTSAC	1 cut(s)	658
NruI	TCGCGA	1 cut(s)	195
NspI	RCATGY	1 cut(s)	581
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	420
PkrI	GCNGC	2 cut(s)	23, 82
PleI	GAGTC	1 cut(s)	569
PpsI	GAGTC	1 cut(s)	569
Psp124BI	GAGCTC	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	728
PstNI	CAGNNNCTG	1 cut(s)	713
PsuI	RGATCY	1 cut(s)	709
RruI	TCGCGA	1 cut(s)	195
RsaI	GTAC	2 cut(s)	291, 705
RsaNI	GTAC	2 cut(s)	290, 704
RseI	CAYNNNNRTG	2 cut(s)	297, 480
SacI	GAGCTC	1 cut(s)	14
SaqAI	TTAA	6 cut(s)	336, 494, 591, 699, 798, 842
SatI	GCNGC	2 cut(s)	22, 81
Sau3AI	GATC	3 cut(s)	235, 451, 709
Sau96I	GGNCC	1 cut(s)	728
SchI	GAGTC	1 cut(s)	570
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	3 cut(s)	14, 604, 644
SetI	ASST	9 cut(s)	14, 40, 82, 312, 377, 390, 406, 440, 459
SfaNI	GCATC	1 cut(s)	157
SinI	GGWCC	1 cut(s)	728
SmiMI	CAYNNNNRTG	2 cut(s)	297, 480
Sse9I	AATT	4 cut(s)	89, 135, 213, 358
SsiI	CCGC	1 cut(s)	208
SstI	GAGCTC	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	2 cut(s)	342, 761
TaaI	ACNGT	1 cut(s)	499
TaiI	ACGT	1 cut(s)	440
TasI	AATT	4 cut(s)	89, 135, 213, 358
TatI	WGTACW	1 cut(s)	289
TfiI	GAWTC	1 cut(s)	420
Tru1I	TTAA	6 cut(s)	336, 494, 591, 699, 798, 842
Tru9I	TTAA	6 cut(s)	336, 494, 591, 699, 798, 842
TscAI	CASTG	4 cut(s)	12, 111, 651, 738
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	2 cut(s)	21, 80
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	1 cut(s)	309
TspRI	CASTG	4 cut(s)	12, 111, 651, 738
VpaK11BI	GGWCC	1 cut(s)	728
XapI	RAATTY	2 cut(s)	135, 358
XceI	RCATGY	1 cut(s)	581
XmnI	GAANNNNTTC	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.