Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Forward (+)

57499118 .. 57500552

Gene Structure 1435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26519

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAATAACAGATATGAAAATTTCCCAATATTGTTGTTTAGCACAGTGAAGTTGTCCATCAGTGTCCAAGAAATGTCCATCAAAGGTGATGAACGACCTTCTGAATATATTGTTAAAGAAAGCAAGTTTGGAGCTATAGAGTCTTATCTAGAATTGGGTCAAATCCCCATCATTGATGCAATAGGTCATGGGATTTCAAGTTCCTTTCTGGACAAGATACGCGAAGCTGCGAAACAATTCTTTGAACTTCCAGTGGAAGAGAAGCAGAGATACTCCAGAGAAATTTATGGTGGCCGTGAAGGATATGGAGTGGATGCCATTGTCTCAGAGAAGCAAGTTCGCGATTGGTCATACCGCCTAATTCTGCGTGTATTCCCTGAAGATCAAAGAAGGCTCAATCTTTGGCCAGAAAATCCAAATGATTTTGGAGAAGTTGTACATGAATATGCAATAGAGGTGAAGTTTATGATGGATGTTCTGTTTAAGGCCATGGCAAAATCTTTGAATTTGGAAGAGAACAGCTTTTCGCATAAGCTGTCTGGAGAGCAAGCTCAGATGATAGCAAGATTCAACTTCTTTCCGACGTGTTCAAGACCCGATCAGGTGTTCGGTGTGAAGACACATACAGATGGGACAGGATTAACTGTTCTGTTGCAGGACAAAGAAGTAGAGGGTCTTCAAGTTTTGGTGGATGGTAAATGGGTTAGAGTCGCCATTGTGCCACATGCCATTTTTGTTAATCTTGGTGCTCAAATGCAGATTATGAGTAATAATGACATATTCAAGAGCCCACTGCACAGGGTGGTGACAAATCCAGAAAGACTGAGGCTATCTGTGGCCTTGCTTAATGTACCAGATCCTGAAACCGAGATTGGTCCAGTGGAGAAACTGATAGATGAGACAAGGCCAAGGATATACAAAAATGTCAAGAACTATTCCAGTATTAACTATAAGTGCTTTCAGAGAGGAGAAGTAGCACTTGAAACATTAAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

332

Amino Acids

38.08

Weight (kDa)

5.82

Isoelectric Point (pI)

33.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	61 - 138	6e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	187 - 281	5.5e-25	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	222, 342
AciI	CCGC	1 cut(s)	355
AclWI	GGATC	1 cut(s)	851
AcoI	YGGCCR	2 cut(s)	292, 404
AcsI	RAATTY	3 cut(s)	19, 282, 505
AcuI	CTGAAG	1 cut(s)	399
AdeI	CACNNNGTG	1 cut(s)	802
AfaI	GTAC	2 cut(s)	438, 852
AflIII	ACRYGT	1 cut(s)	584
AgsI	TTSAA	8 cut(s)	198, 245, 505, 571, 591, 680, 784, 983
AjiI	CACGTC	1 cut(s)	585
AjuI	GAANNNNNNNTTGG	4 cut(s)	111, 143, 855, 887
AloI	GAACNNNNNNTCC	4 cut(s)	184, 216, 630, 662
AluBI	AGCT	5 cut(s)	134, 227, 522, 535, 551
AluI	AGCT	5 cut(s)	134, 227, 522, 535, 551
Alw21I	GWGCWC	1 cut(s)	751
Alw26I	GTCTC	2 cut(s)	328, 893
AlwI	GGATC	1 cut(s)	851
AlwNI	CAGNNNCTG	1 cut(s)	860
AoxI	GGCC	5 cut(s)	292, 404, 486, 837, 905
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	3 cut(s)	19, 282, 505
Asp700I	GAANNNNTTC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	875
AsuHPI	GGTGA	3 cut(s)	98, 469, 817
AvaII	GGWCC	1 cut(s)	875
BalI	TGGCCA	1 cut(s)	406
BanII	GRGCYC	1 cut(s)	791
BarI	GAAGNNNNNNTAC	4 cut(s)	254, 286, 660, 692
BbsI	GAAGAC	2 cut(s)	623, 668
Bbv12I	GWGCWC	1 cut(s)	751
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	6 cut(s)	65, 86, 176, 463, 623, 686
BceAI	ACGGC	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	328, 893
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	135
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	875
BmgBI	CACGTC	1 cut(s)	585
BmgT120I	GGNCC	1 cut(s)	875
BmsI	GCATC	2 cut(s)	166, 304
BpiI	GAAGAC	2 cut(s)	623, 668
BpmI	CTGGAG	2 cut(s)	259, 561
BsaJI	CCNNGG	2 cut(s)	489, 908
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bse1I	ACTGG	3 cut(s)	251, 878, 939
BseDI	CCNNGG	2 cut(s)	489, 908
BseGI	GGATG	3 cut(s)	319, 478, 697
BseMII	CTCAG	3 cut(s)	339, 566, 815
BseNI	ACTGG	3 cut(s)	251, 878, 939
BseRI	GAGGAG	1 cut(s)	981
BseXI	GCAGC	1 cut(s)	214
BsgI	GTGCAG	1 cut(s)	779
Bsh1236I	CGCG	2 cut(s)	222, 342
BshFI	GGCC	5 cut(s)	294, 406, 488, 839, 907
BsiHKAI	GWGCWC	1 cut(s)	751
BslFI	GGGAC	1 cut(s)	646
BsmAI	GTCTC	2 cut(s)	328, 893
BsmFI	GGGAC	1 cut(s)	646
BsnI	GGCC	5 cut(s)	294, 406, 488, 839, 907
Bsp1286I	GDGCHC	2 cut(s)	751, 791
Bsp1407I	TGTACA	1 cut(s)	436
Bsp143I	GATC	3 cut(s)	382, 598, 856
Bsp19I	CCATGG	1 cut(s)	489
Bsp68I	TCGCGA	1 cut(s)	342
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	5 cut(s)	294, 406, 488, 839, 907
BspCNI	CTCAG	3 cut(s)	338, 565, 816
BspFNI	CGCG	2 cut(s)	222, 342
BspPI	GGATC	1 cut(s)	851
BsrGI	TGTACA	1 cut(s)	436
BsrI	ACTGG	3 cut(s)	251, 878, 939
BssECI	CCNNGG	2 cut(s)	489, 908
BssMI	GATC	3 cut(s)	382, 598, 856
BssT1I	CCWWGG	2 cut(s)	489, 908
Bst4CI	ACNGT	2 cut(s)	46, 646
Bst6I	CTCTTC	2 cut(s)	252, 507
BstAUI	TGTACA	1 cut(s)	436
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	3 cut(s)	325, 552, 824
BstDSI	CCRYGG	1 cut(s)	489
BstF5I	GGATG	3 cut(s)	319, 478, 697
BstFNI	CGCG	2 cut(s)	222, 342
BstKTI	GATC	3 cut(s)	385, 601, 859
BstMAI	GTCTC	2 cut(s)	328, 893
BstMBI	GATC	3 cut(s)	382, 598, 856
BstNSI	RCATGY	1 cut(s)	728
BstSFI	CTRYAG	1 cut(s)	135
BstUI	CGCG	2 cut(s)	222, 342
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	2 cut(s)	623, 668
BstX2I	RGATCY	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	856
BsuRI	GGCC	5 cut(s)	294, 406, 488, 839, 907
BtgI	CCRYGG	1 cut(s)	489
BtrI	CACGTC	1 cut(s)	585
BtsCI	GGATG	3 cut(s)	319, 478, 697
BtsI	GCAGTG	1 cut(s)	791
BtsIMutI	CAGTG	5 cut(s)	51, 67, 258, 791, 885
BtuMI	TCGCGA	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	549
CaiI	CAGNNNCTG	1 cut(s)	860
Cfr13I	GGNCC	1 cut(s)	875
Csp6I	GTAC	2 cut(s)	437, 851
CviAII	CATG	4 cut(s)	188, 440, 490, 725
CviQI	GTAC	2 cut(s)	437, 851
DdeI	CTNAG	3 cut(s)	325, 552, 824
DpnI	GATC	3 cut(s)	384, 600, 858
DpnII	GATC	3 cut(s)	382, 598, 856
DraIII	CACNNNGTG	1 cut(s)	802
EaeI	YGGCCR	2 cut(s)	292, 404
Eam1104I	CTCTTC	2 cut(s)	252, 507
EarI	CTCTTC	2 cut(s)	252, 507
Eco130I	CCWWGG	2 cut(s)	489, 908
Eco24I	GRGCYC	1 cut(s)	791
Eco47I	GGWCC	1 cut(s)	875
Eco57I	CTGAAG	1 cut(s)	399
EcoT14I	CCWWGG	2 cut(s)	489, 908
EcoT38I	GRGCYC	1 cut(s)	791
ErhI	CCWWGG	2 cut(s)	489, 908
FaeI	CATG	4 cut(s)	191, 443, 493, 728
FalI	AAGNNNNNCTT	2 cut(s)	963, 995
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	4 cut(s)	187, 439, 489, 724
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	3 cut(s)	326, 485, 704
FriOI	GRGCYC	1 cut(s)	791
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	1 cut(s)	228
GsuI	CTGGAG	2 cut(s)	259, 561
HaeIII	GGCC	5 cut(s)	294, 406, 488, 839, 907
Hin1II	CATG	4 cut(s)	191, 443, 493, 728
HinfI	GANTC	3 cut(s)	140, 567, 708
HphI	GGTGA	3 cut(s)	98, 469, 817
Hpy188I	TCNGA	5 cut(s)	103, 328, 555, 582, 963
Hpy99I	CGWCG	1 cut(s)	586
HpyAV	CCTTC	3 cut(s)	108, 293, 384
HpyCH4III	ACNGT	2 cut(s)	46, 646
HpyCH4IV	ACGT	1 cut(s)	584
HpyCH4V	TGCA	5 cut(s)	179, 449, 655, 757, 796
HpyF3I	CTNAG	3 cut(s)	325, 552, 824
HpySE526I	ACGT	1 cut(s)	584
Hsp92II	CATG	4 cut(s)	191, 443, 493, 728
Kzo9I	GATC	3 cut(s)	382, 598, 856
LmnI	GCTCC	1 cut(s)	131
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	2 cut(s)	166, 304
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	1 cut(s)	584
MaeIII	GTNAC	1 cut(s)	805
MalI	GATC	3 cut(s)	384, 600, 858
MboI	GATC	3 cut(s)	382, 598, 856
MboII	GAAGA	5 cut(s)	269, 392, 524, 628, 668
MflI	RGATCY	1 cut(s)	856
MhlI	GDGCHC	2 cut(s)	751, 791
MlsI	TGGCCA	1 cut(s)	406
MluCI	AATT	6 cut(s)	19, 152, 236, 282, 360, 505
MluNI	TGGCCA	1 cut(s)	406
MlyI	GAGTC	2 cut(s)	149, 717
MmeI	TCCRAC	1 cut(s)	605
MnlI	CCTC	4 cut(s)	448, 664, 819, 959
Mox20I	TGGCCA	1 cut(s)	406
MroXI	GAANNNNTTC	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	406
MseI	TTAA	7 cut(s)	114, 483, 641, 738, 846, 945, 989
MslI	CAYNNNNRTG	2 cut(s)	444, 627
Msp20I	TGGCCA	1 cut(s)	406
MvnI	CGCG	2 cut(s)	222, 342
NcoI	CCATGG	1 cut(s)	489
NdeII	GATC	3 cut(s)	382, 598, 856
NlaIII	CATG	4 cut(s)	191, 443, 493, 728
NmuCI	GTSAC	1 cut(s)	805
NruI	TCGCGA	1 cut(s)	342
NspI	RCATGY	1 cut(s)	728
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	567
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	2 cut(s)	148, 716
PpsI	GAGTC	2 cut(s)	148, 716
PspPI	GGNCC	1 cut(s)	875
PstNI	CAGNNNCTG	1 cut(s)	860
PsuI	RGATCY	1 cut(s)	856
RruI	TCGCGA	1 cut(s)	342
RsaI	GTAC	2 cut(s)	438, 852
RsaNI	GTAC	2 cut(s)	437, 851
RseI	CAYNNNNRTG	2 cut(s)	444, 627
SaqAI	TTAA	7 cut(s)	114, 483, 641, 738, 846, 945, 989
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	3 cut(s)	382, 598, 856
Sau96I	GGNCC	1 cut(s)	875
SchI	GAGTC	2 cut(s)	149, 717
SduI	GDGCHC	2 cut(s)	751, 791
SfaNI	GCATC	2 cut(s)	166, 304
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	1 cut(s)	875
SmiMI	CAYNNNNRTG	2 cut(s)	444, 627
Sse9I	AATT	6 cut(s)	19, 152, 236, 282, 360, 505
SsiI	CCGC	1 cut(s)	355
SspI	AATATT	1 cut(s)	30
SspMI	CTAG	1 cut(s)	149
StyI	CCWWGG	2 cut(s)	489, 908
TaaI	ACNGT	2 cut(s)	46, 646
TaiI	ACGT	1 cut(s)	587
TasI	AATT	6 cut(s)	19, 152, 236, 282, 360, 505
TatI	WGTACW	1 cut(s)	436
TfiI	GAWTC	1 cut(s)	567
Tru1I	TTAA	7 cut(s)	114, 483, 641, 738, 846, 945, 989
Tru9I	TTAA	7 cut(s)	114, 483, 641, 738, 846, 945, 989
TscAI	CASTG	5 cut(s)	51, 67, 258, 798, 885
TseFI	GTSAC	1 cut(s)	805
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	805
TspDTI	ATGAA	4 cut(s)	17, 30, 105, 456
TspRI	CASTG	5 cut(s)	51, 67, 258, 798, 885
VpaK11BI	GGWCC	1 cut(s)	875
XapI	RAATTY	3 cut(s)	19, 282, 505
XbaI	TCTAGA	1 cut(s)	148
XceI	RCATGY	1 cut(s)	728
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.