Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Reverse (-)

90535570 .. 90537634

Gene Structure 2065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00153820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGCTTGTTTTGTTCAACTATACTCCGACCAGTCATGTTCTGTTGCTGTGTATCAATGGCACAGTGAAGTTGTCCATGAGTGTCCAAGAGATGAGCATCAAAGGTGAGGAACCTCCCCCTCCGTATATTGTTAAAGAAAGCAGGTTTGGAGCTATAGAGTCTTCCCCAGAGTTGGGTCAAATCCCCATCATTGATGTCAGTCTCTTCTCCCCATCATCAATTGATTCTAAGCAAGCGAAGATCGAACTAGACAAACTTAGAACAGCTCTCCGCTCATCAGGCTGCTTTCAGGCAATTGGTCATGGGATATCAAGTTCCTTTCTGGACAAGGTACGCGAAGCTGCGACACAATTCTTTGAACTTCCAGTGGAAGAGAAGCAAAAGTACTCCAGAGAAATTTATGGTGGCCGTGAAGGATATGGGGAGGATGTCATTGTCTCAGAGAAGCAAGTTCTTGATTGGTCCTACCGCCTAATTCTTCAGGTATTCCCTGAAGATCATAGAAGGCTCGATCTCTGGCCAGAAAATCCAAATGATTTTGGAGAGGTTGTACATGAATATGCAACAAAGGTAAAGTTCATGATGGGTGTTCTTTTTAAGGCCATGGCGAAATCGTTGAATTTGGAAGATAACAGCTTTTCAGATAAGCTGCTTGGAGACAGAGCTCTGATGCAAGCAAGATTCAACTTCTATCCGCCATGTTCAAGATCCGATCAGGTTCTTGGTGTGAAGCCACATACAGATAGGTCAGGAGTGACAGTTTTGTTGCAAGACAAAGAAGTTGAAGGTCTTCAAGTTTTGGTAGATGGCAAATGGGTTAGAGCCCCCATCGTGCCTCATGCTATAGTTGTTAATCTTGGTGATCAAATGCAGATTATGAGTAATGGTGTATTCAAGAGCCCAATGCACAGGGTGGTGACAAATCCAGAAAGGATGAGGCTATCTGTGGCCTTGTTTAATGAACCAGATCCTGAAACTGTGATTAGTCCAGTGGAGAAACTGATAGATGAGACAAGGCCAAGAGTATACAAAAATGTCAAGAATTATGGTCGCATCAACTACGAATGCTATCAGAGAGGAGAAATAGCACTCGAAACAGTGAAGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

369

Amino Acids

41.8

Weight (kDa)

5.91

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	61 - 176	1.8e-23	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	227 - 322	1.9e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	132
AccBSI	CCGCTC	1 cut(s)	273
AccI	GTMKAC	1 cut(s)	1026
AccII	CGCG	1 cut(s)	336
AciI	CCGC	3 cut(s)	271, 469, 695
AclWI	GGATC	2 cut(s)	702, 962
AcoI	YGGCCR	2 cut(s)	406, 518
AcsI	RAATTY	2 cut(s)	396, 619
AcuI	CTGAAG	2 cut(s)	464, 513
AdeI	CACNNNGTG	1 cut(s)	913
AfaI	GTAC	3 cut(s)	333, 386, 552
AfiI	CCNNNNNNNGG	2 cut(s)	172, 173
AgsI	TTSAA	8 cut(s)	16, 359, 619, 685, 705, 785, 794, 895
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AloI	GAACNNNNNNTCC	2 cut(s)	298, 330
AluBI	AGCT	6 cut(s)	152, 266, 341, 636, 649, 665
AluI	AGCT	6 cut(s)	152, 266, 341, 636, 649, 665
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	4 cut(s)	206, 442, 651, 1004
AlwI	GGATC	2 cut(s)	702, 962
AlwNI	CAGNNNCTG	1 cut(s)	971
AoxI	GGCC	5 cut(s)	406, 518, 600, 948, 1016
ApeKI	GCWGC	3 cut(s)	282, 341, 649
ApoI	RAATTY	2 cut(s)	396, 619
Asp700I	GAANNNNTTC	1 cut(s)	789
AspS9I	GGNCC	1 cut(s)	462
AsuHPI	GGTGA	3 cut(s)	116, 872, 928
AvaII	GGWCC	1 cut(s)	462
BalI	TGGCCA	1 cut(s)	520
BanII	GRGCYC	3 cut(s)	667, 826, 902
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
BbsI	GAAGAC	2 cut(s)	153, 782
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	3 cut(s)	269, 328, 636
BccI	CCATC	5 cut(s)	194, 220, 577, 800, 836
BceAI	ACGGC	1 cut(s)	393
BclI	TGATCA	1 cut(s)	862
BcoDI	GTCTC	4 cut(s)	206, 442, 651, 1004
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	2 cut(s)	153, 843
BfuAI	ACCTGC	1 cut(s)	132
BglII	AGATCT	1 cut(s)	1104
BisI	GCNGC	3 cut(s)	283, 342, 650
BlsI	GCNGC	3 cut(s)	284, 343, 651
BmcAI	AGTACT	1 cut(s)	386
Bme18I	GGWCC	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	462
BmiI	GGNNCC	1 cut(s)	111
BmsI	GCATC	3 cut(s)	105, 660, 1062
BpiI	GAAGAC	2 cut(s)	153, 782
BpmI	CTGGAG	1 cut(s)	373
BsaBI	GATNNNNATC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	603
BsaXI	ACNNNNNCTCC	4 cut(s)	534, 564, 744, 774
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 173
Bse1I	ACTGG	3 cut(s)	30, 365, 989
Bse8I	GATNNNNATC	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	603
BseGI	GGATG	2 cut(s)	433, 939
BseJI	GATNNNNATC	1 cut(s)	95
BseLI	CCNNNNNNNGG	2 cut(s)	172, 173
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	3 cut(s)	30, 365, 989
BseRI	GAGGAG	1 cut(s)	1092
BseXI	GCAGC	3 cut(s)	269, 328, 636
Bsh1236I	CGCG	1 cut(s)	336
BshFI	GGCC	5 cut(s)	408, 520, 602, 950, 1018
BsiHKAI	GWGCWC	1 cut(s)	667
BslI	CCNNNNNNNGG	2 cut(s)	172, 173
BsmAI	GTCTC	4 cut(s)	206, 442, 651, 1004
BsmI	GAATGC	1 cut(s)	1070
BsnI	GGCC	5 cut(s)	408, 520, 602, 950, 1018
Bsp1286I	GDGCHC	3 cut(s)	667, 826, 902
Bsp1407I	TGTACA	1 cut(s)	550
Bsp143I	GATC	8 cut(s)	240, 496, 511, 707, 712, 862, 967, 1104
Bsp19I	CCATGG	1 cut(s)	603
BspACI	CCGC	3 cut(s)	271, 469, 695
BspANI	GGCC	5 cut(s)	408, 520, 602, 950, 1018
BspCNI	CTCAG	1 cut(s)	452
BspFNI	CGCG	1 cut(s)	336
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	132
BspPI	GGATC	2 cut(s)	702, 962
BsrBI	CCGCTC	1 cut(s)	273
BsrGI	TGTACA	1 cut(s)	550
BsrI	ACTGG	3 cut(s)	30, 365, 989
BssECI	CCNNGG	1 cut(s)	603
BssMI	GATC	8 cut(s)	240, 496, 511, 707, 712, 862, 967, 1104
BssNAI	GTATAC	1 cut(s)	1027
BssT1I	CCWWGG	1 cut(s)	603
Bst1107I	GTATAC	1 cut(s)	1027
Bst4CI	ACNGT	4 cut(s)	64, 760, 979, 1099
Bst6I	CTCTTC	2 cut(s)	209, 366
BstAUI	TGTACA	1 cut(s)	550
BstC8I	GCNNGC	2 cut(s)	234, 675
BstDEI	CTNAG	3 cut(s)	228, 257, 439
BstDSI	CCRYGG	1 cut(s)	603
BstF5I	GGATG	2 cut(s)	433, 939
BstFNI	CGCG	1 cut(s)	336
BstKTI	GATC	8 cut(s)	243, 499, 514, 710, 715, 865, 970, 1107
BstMAI	GTCTC	4 cut(s)	206, 442, 651, 1004
BstMBI	GATC	8 cut(s)	240, 496, 511, 707, 712, 862, 967, 1104
BstMWI	GCNNNNNNNGC	1 cut(s)	279
BstSFI	CTRYAG	2 cut(s)	153, 843
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	3 cut(s)	269, 328, 636
BstV2I	GAAGAC	2 cut(s)	153, 782
BstX2I	RGATCY	3 cut(s)	707, 967, 1104
BstYI	RGATCY	3 cut(s)	707, 967, 1104
BstZ17I	GTATAC	1 cut(s)	1027
BsuRI	GGCC	5 cut(s)	408, 520, 602, 950, 1018
BtgI	CCRYGG	1 cut(s)	603
BtsCI	GGATG	2 cut(s)	433, 939
BtsIMutI	CAGTG	4 cut(s)	69, 372, 996, 1104
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	234, 675
CaiI	CAGNNNCTG	1 cut(s)	971
CciI	TCATGA	1 cut(s)	579
Cfr13I	GGNCC	1 cut(s)	462
Csp6I	GTAC	3 cut(s)	332, 385, 551
CviAII	CATG	8 cut(s)	35, 76, 302, 554, 580, 604, 699, 839
CviQI	GTAC	3 cut(s)	332, 385, 551
DdeI	CTNAG	3 cut(s)	228, 257, 439
DpnI	GATC	8 cut(s)	242, 498, 513, 709, 714, 864, 969, 1106
DpnII	GATC	8 cut(s)	240, 496, 511, 707, 712, 862, 967, 1104
DraIII	CACNNNGTG	1 cut(s)	913
EaeI	YGGCCR	2 cut(s)	406, 518
Eam1104I	CTCTTC	2 cut(s)	209, 366
EarI	CTCTTC	2 cut(s)	209, 366
EciI	GGCGGA	1 cut(s)	684
Ecl136II	GAGCTC	1 cut(s)	665
Eco130I	CCWWGG	1 cut(s)	603
Eco24I	GRGCYC	3 cut(s)	667, 826, 902
Eco32I	GATATC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	462
Eco53kI	GAGCTC	1 cut(s)	665
Eco57I	CTGAAG	2 cut(s)	464, 513
EcoICRI	GAGCTC	1 cut(s)	665
EcoRV	GATATC	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	603
EcoT38I	GRGCYC	3 cut(s)	667, 826, 902
ErhI	CCWWGG	1 cut(s)	603
FaeI	CATG	8 cut(s)	38, 79, 305, 557, 583, 607, 702, 842
FatI	CATG	8 cut(s)	34, 75, 301, 553, 579, 603, 698, 838
FbaI	TGATCA	1 cut(s)	862
FblI	GTMKAC	1 cut(s)	1026
Fnu4HI	GCNGC	3 cut(s)	283, 342, 650
FokI	GGATG	2 cut(s)	440, 946
FriOI	GRGCYC	3 cut(s)	667, 826, 902
Fsp4HI	GCNGC	3 cut(s)	283, 342, 650
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	3 cut(s)	283, 342, 650
GsuI	CTGGAG	1 cut(s)	373
HaeIII	GGCC	5 cut(s)	408, 520, 602, 950, 1018
Hin1II	CATG	8 cut(s)	38, 79, 305, 557, 583, 607, 702, 842
HinfI	GANTC	3 cut(s)	158, 224, 681
HphI	GGTGA	3 cut(s)	116, 872, 928
Hpy166II	GTNNAC	1 cut(s)	1027
Hpy188I	TCNGA	6 cut(s)	27, 442, 643, 669, 712, 1074
Hpy8I	GTNNAC	1 cut(s)	1027
HpyAV	CCTTC	3 cut(s)	407, 498, 779
HpyCH4III	ACNGT	4 cut(s)	64, 760, 979, 1099
HpyCH4V	TGCA	5 cut(s)	563, 673, 769, 871, 907
HpyF10VI	GCNNNNNNNGC	1 cut(s)	279
HpyF3I	CTNAG	3 cut(s)	228, 257, 439
Hsp92II	CATG	8 cut(s)	38, 79, 305, 557, 583, 607, 702, 842
Ksp22I	TGATCA	1 cut(s)	862
Kzo9I	GATC	8 cut(s)	240, 496, 511, 707, 712, 862, 967, 1104
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	3 cut(s)	269, 328, 636
LweI	GCATC	3 cut(s)	105, 660, 1062
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	2 cut(s)	754, 916
MalI	GATC	8 cut(s)	242, 498, 513, 709, 714, 864, 969, 1106
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	8 cut(s)	240, 496, 511, 707, 712, 862, 967, 1104
MboII	GAAGA	8 cut(s)	153, 196, 250, 383, 470, 506, 638, 782
MfeI	CAATTG	2 cut(s)	219, 294
MflI	RGATCY	3 cut(s)	707, 967, 1104
MhlI	GDGCHC	3 cut(s)	667, 826, 902
MlsI	TGGCCA	1 cut(s)	520
MluCI	AATT	7 cut(s)	219, 294, 350, 396, 474, 619, 1042
MluNI	TGGCCA	1 cut(s)	520
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	8 cut(s)	100, 123, 129, 418, 538, 846, 930, 1070
Mox20I	TGGCCA	1 cut(s)	520
MroXI	GAANNNNTTC	1 cut(s)	789
MscI	TGGCCA	1 cut(s)	520
MseI	TTAA	4 cut(s)	132, 597, 852, 957
MslI	CAYNNNNRTG	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	520
MunI	CAATTG	2 cut(s)	219, 294
Mva1269I	GAATGC	1 cut(s)	1070
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	279
NcoI	CCATGG	1 cut(s)	603
NdeII	GATC	8 cut(s)	240, 496, 511, 707, 712, 862, 967, 1104
NlaIII	CATG	8 cut(s)	38, 79, 305, 557, 583, 607, 702, 842
NlaIV	GGNNCC	1 cut(s)	111
NmuCI	GTSAC	2 cut(s)	754, 916
PagI	TCATGA	1 cut(s)	579
PctI	GAATGC	1 cut(s)	1070
PdmI	GAANNNNTTC	1 cut(s)	789
PfeI	GAWTC	2 cut(s)	224, 681
PkrI	GCNGC	3 cut(s)	284, 343, 651
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	667
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	462
PstNI	CAGNNNCTG	1 cut(s)	971
PsuI	RGATCY	3 cut(s)	707, 967, 1104
RsaI	GTAC	3 cut(s)	333, 386, 552
RsaNI	GTAC	3 cut(s)	332, 385, 551
RseI	CAYNNNNRTG	1 cut(s)	558
SacI	GAGCTC	1 cut(s)	667
SaqAI	TTAA	4 cut(s)	132, 597, 852, 957
SatI	GCNGC	3 cut(s)	283, 342, 650
Sau3AI	GATC	8 cut(s)	240, 496, 511, 707, 712, 862, 967, 1104
Sau96I	GGNCC	1 cut(s)	462
ScaI	AGTACT	1 cut(s)	386
SchI	GAGTC	1 cut(s)	167
SduI	GDGCHC	3 cut(s)	667, 826, 902
SfaNI	GCATC	3 cut(s)	105, 660, 1062
SfcI	CTRYAG	2 cut(s)	153, 843
SinI	GGWCC	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	558
Sse9I	AATT	7 cut(s)	219, 294, 350, 396, 474, 619, 1042
SsiI	CCGC	3 cut(s)	271, 469, 695
SspMI	CTAG	1 cut(s)	248
SstI	GAGCTC	1 cut(s)	667
StyI	CCWWGG	1 cut(s)	603
TaaI	ACNGT	4 cut(s)	64, 760, 979, 1099
TaqI	TCGA	3 cut(s)	243, 510, 1092
TasI	AATT	7 cut(s)	219, 294, 350, 396, 474, 619, 1042
TatI	WGTACW	2 cut(s)	384, 550
TfiI	GAWTC	2 cut(s)	224, 681
Tru1I	TTAA	4 cut(s)	132, 597, 852, 957
Tru9I	TTAA	4 cut(s)	132, 597, 852, 957
TscAI	CASTG	4 cut(s)	69, 372, 996, 1104
TseFI	GTSAC	2 cut(s)	754, 916
TseI	GCWGC	3 cut(s)	282, 341, 649
Tsp45I	GTSAC	2 cut(s)	754, 916
TspDTI	ATGAA	3 cut(s)	568, 570, 975
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	4 cut(s)	69, 372, 996, 1104
VpaK11BI	GGWCC	1 cut(s)	462
XapI	RAATTY	2 cut(s)	396, 619
XmiI	GTMKAC	1 cut(s)	1026
XmnI	GAANNNNTTC	1 cut(s)	789
XspI	CTAG	1 cut(s)	248
ZrmI	AGTACT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.