Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Forward (+)

2061377 .. 2062700

Gene Structure 1324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG026900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAGTGTCGAAGAAATGTCCATCAATGGTGATGAACCACTCCCTGAGTATATTGTTGAACAAGGCATCTTTGGAGCTATAGATTCTTCCCCATCACTAGGTCAGATCCCCATCTTTGATATCAATTTCTTCTCCTCAACATCACTCAATTCTAAGCAAGCGAAGAACGAACTTGAGAAACTTAGATCAGCACTAAGCTCATCAGGCTGCTTCCAGGCAGTTGGTCATGGGATTTCAAGTTCCTTTCTTGACAAGGTACGCGAAGCTGGAACACAGTTCTTTGCACTTCCAGTGGACGAGAAGCAAAAGTACTTAGAGGCAGCTCATGTCGCCGGGAATGATGTCAAAGTCACAGAGAAGCAAGTTCTTGACTGGTGCTACCGTCTAACTCTTCGAGTATTCCCAGAAGATAAAAGAAGCCTTAATCTTTGGCCAGAAAGTCCAAACAACTTTAGAGAGGTGATAGATGAATATGCAACAAAGATAAAGTTAATGATGGGTGTTCTCTTTAAGGCCATGGCAAAATGTTTGAATTTGGAAGAGAACAGCTTTGCACACCAGCTGTTTGGAGAGCAAGCTCTGATGACAGCAAGATTCAACTTCTATCCGCGGTGTTCAAGAGCCGATCAGGTGTTTGGTGTGAAGCCACATACAGATGGGTCAGGAGTGACAGTTTTGTTGCAAGACAAAGAAGTACAAGGTCTTCAAGTTTTGGTAGATGGCAAATGGGTTAGAGTCCCCATTGTGCCTCGTGCACTAGTTGTTAATCTCGGGGATCAGATGCAGATTATGAGTAATGGAATATTCAAGAGTGCAATGCACAGGGTGGTGACAAATACAGAAAAGTTGAGACTATCTGTAGCCATGTTTAACTTACCAGCTCCTGAAACTGAGATTGGTCCATTGGTGAGCTTGATACATCATGAAACAAGGCCAAGGTTGTACAAAAATGTCAAGAACTACAGTCGCATCAACTACAAATGCTACCAGAGAGGAGAAATAGCACTTGAAACAGTAAAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

341

Amino Acids

38.43

Weight (kDa)

7.05

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	36 - 146	5.9e-20	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	198 - 291	4.6e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	261, 610
AciI	CCGC	2 cut(s)	608, 610
AclWI	GGATC	2 cut(s)	100, 783
AcoI	YGGCCR	1 cut(s)	431
AcsI	RAATTY	1 cut(s)	532
AdeI	CACNNNGTG	1 cut(s)	826
AfaI	GTAC	4 cut(s)	258, 311, 696, 944
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	8 cut(s)	59, 237, 532, 598, 618, 707, 808, 1010
AhlI	ACTAGT	1 cut(s)	757
AjnI	CCWGG	1 cut(s)	213
AjuI	GAANNNNNNNTTGG	2 cut(s)	879, 911
AloI	GAACNNNNNNTCC	2 cut(s)	223, 255
AluBI	AGCT	9 cut(s)	77, 198, 266, 323, 549, 562, 578, 881, 912
AluI	AGCT	9 cut(s)	77, 198, 266, 323, 549, 562, 578, 881, 912
Alw21I	GWGCWC	1 cut(s)	757
Alw26I	GTCTC	1 cut(s)	844
Alw44I	GTGCAC	1 cut(s)	753
AlwI	GGATC	2 cut(s)	100, 783
AlwNI	CAGNNNCTG	1 cut(s)	884
Ama87I	CYCGRG	1 cut(s)	770
AoxI	GGCC	3 cut(s)	431, 513, 932
ApaLI	GTGCAC	1 cut(s)	753
ApeKI	GCWGC	2 cut(s)	207, 320
ApoI	RAATTY	1 cut(s)	532
AspS9I	GGNCC	1 cut(s)	899
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	4 cut(s)	41, 472, 841, 919
AvaI	CYCGRG	1 cut(s)	770
AvaII	GGWCC	1 cut(s)	899
BaeGI	GKGCMC	1 cut(s)	757
BalI	TGGCCA	1 cut(s)	433
BarI	GAAGNNNNNNTAC	4 cut(s)	293, 325, 687, 719
BauI	CACGAG	1 cut(s)	750
BbsI	GAAGAC	1 cut(s)	695
Bbv12I	GWGCWC	1 cut(s)	757
BbvI	GCAGC	2 cut(s)	194, 332
BccI	CCATC	6 cut(s)	29, 100, 119, 490, 650, 713
BciT130I	CCWGG	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	844
BcuI	ACTAGT	1 cut(s)	757
BfaI	CTAG	2 cut(s)	98, 758
BfmI	CTRYAG	3 cut(s)	78, 858, 961
BisI	GCNGC	2 cut(s)	208, 321
BlsI	GCNGC	2 cut(s)	209, 322
BmcAI	AGTACT	1 cut(s)	311
Bme1390I	CCNGG	2 cut(s)	215, 334
Bme18I	GGWCC	1 cut(s)	899
BmeT110I	CYCGRG	1 cut(s)	770
BmgT120I	GGNCC	1 cut(s)	899
BmrFI	CCNGG	2 cut(s)	215, 334
BmsI	GCATC	3 cut(s)	75, 771, 978
BpiI	GAAGAC	1 cut(s)	695
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	110
BsaJI	CCNNGG	3 cut(s)	516, 608, 935
BsaXI	ACNNNNNCTCC	2 cut(s)	657, 687
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	290, 377
Bse3DI	GCAATG	1 cut(s)	822
Bse8I	GATNNNNATC	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	3 cut(s)	516, 608, 935
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMI	GCAATG	1 cut(s)	822
BseMII	CTCAG	2 cut(s)	36, 882
BseNI	ACTGG	2 cut(s)	290, 377
BseRI	GAGGAG	2 cut(s)	124, 1008
BseSI	GKGCMC	1 cut(s)	757
BseXI	GCAGC	2 cut(s)	194, 332
Bsh1236I	CGCG	2 cut(s)	261, 610
BshFI	GGCC	3 cut(s)	433, 515, 934
BsiHKAI	GWGCWC	1 cut(s)	757
BsiHKCI	CYCGRG	1 cut(s)	770
BsiSI	CCGG	1 cut(s)	333
BslFI	GGGAC	1 cut(s)	722
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	844
BsmFI	GGGAC	1 cut(s)	722
BsnI	GGCC	3 cut(s)	433, 515, 934
BsoBI	CYCGRG	1 cut(s)	770
Bsp1286I	GDGCHC	1 cut(s)	757
Bsp1407I	TGTACA	1 cut(s)	942
Bsp143I	GATC	4 cut(s)	105, 185, 625, 775
Bsp19I	CCATGG	1 cut(s)	516
BspACI	CCGC	2 cut(s)	608, 610
BspANI	GGCC	3 cut(s)	433, 515, 934
BspCNI	CTCAG	2 cut(s)	37, 883
BspFNI	CGCG	2 cut(s)	261, 610
BspHI	TCATGA	1 cut(s)	922
BspPI	GGATC	2 cut(s)	100, 783
BsrDI	GCAATG	1 cut(s)	822
BsrGI	TGTACA	1 cut(s)	942
BsrI	ACTGG	2 cut(s)	290, 377
BssECI	CCNNGG	3 cut(s)	516, 608, 935
BssMI	GATC	4 cut(s)	105, 185, 625, 775
BssSI	CACGAG	1 cut(s)	750
BssT1I	CCWWGG	2 cut(s)	516, 935
Bst2BI	CACGAG	1 cut(s)	750
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	5 cut(s)	276, 383, 673, 965, 1015
Bst6I	CTCTTC	2 cut(s)	396, 534
BstAUI	TGTACA	1 cut(s)	942
BstC8I	GCNNGC	2 cut(s)	159, 576
BstDEI	CTNAG	6 cut(s)	45, 153, 182, 194, 313, 891
BstDSI	CCRYGG	2 cut(s)	516, 608
BstFNI	CGCG	2 cut(s)	261, 610
BstKTI	GATC	4 cut(s)	108, 188, 628, 778
BstMAI	GTCTC	1 cut(s)	844
BstMBI	GATC	4 cut(s)	105, 185, 625, 775
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 329
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	213, 332
BstSFI	CTRYAG	3 cut(s)	78, 858, 961
BstSLI	GKGCMC	1 cut(s)	757
BstUI	CGCG	2 cut(s)	261, 610
BstV1I	GCAGC	2 cut(s)	194, 332
BstV2I	GAAGAC	1 cut(s)	695
BstX2I	RGATCY	1 cut(s)	105
BstXI	CCANNNNNNTGG	2 cut(s)	221, 566
BstYI	RGATCY	1 cut(s)	105
BsuRI	GGCC	3 cut(s)	433, 515, 934
BtgI	CCRYGG	2 cut(s)	516, 608
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	2 cut(s)	159, 576
CaiI	CAGNNNCTG	1 cut(s)	884
CciI	TCATGA	1 cut(s)	922
Cfr13I	GGNCC	1 cut(s)	899
Cfr42I	CCGCGG	1 cut(s)	611
Csp6I	GTAC	4 cut(s)	257, 310, 695, 943
CviAII	CATG	5 cut(s)	227, 326, 517, 865, 923
CviQI	GTAC	4 cut(s)	257, 310, 695, 943
DdeI	CTNAG	6 cut(s)	45, 153, 182, 194, 313, 891
DpnI	GATC	4 cut(s)	107, 187, 627, 777
DpnII	GATC	4 cut(s)	105, 185, 625, 775
DraIII	CACNNNGTG	1 cut(s)	826
EaeI	YGGCCR	1 cut(s)	431
Eam1104I	CTCTTC	2 cut(s)	396, 534
EarI	CTCTTC	2 cut(s)	396, 534
Eco130I	CCWWGG	2 cut(s)	516, 935
Eco32I	GATATC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	899
Eco88I	CYCGRG	1 cut(s)	770
EcoRII	CCWGG	1 cut(s)	213
EcoRV	GATATC	1 cut(s)	121
EcoT14I	CCWWGG	2 cut(s)	516, 935
ErhI	CCWWGG	2 cut(s)	516, 935
FaeI	CATG	5 cut(s)	230, 329, 520, 868, 926
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	5 cut(s)	226, 325, 516, 864, 922
Fnu4HI	GCNGC	2 cut(s)	208, 321
Fsp4HI	GCNGC	2 cut(s)	208, 321
FspBI	CTAG	2 cut(s)	98, 758
GluI	GCNGC	2 cut(s)	208, 321
HaeIII	GGCC	3 cut(s)	433, 515, 934
HapII	CCGG	1 cut(s)	333
Hin1II	CATG	5 cut(s)	230, 329, 520, 868, 926
HinfI	GANTC	3 cut(s)	83, 594, 735
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	4 cut(s)	41, 472, 841, 919
Hpy166II	GTNNAC	2 cut(s)	295, 755
Hpy188I	TCNGA	3 cut(s)	105, 582, 780
Hpy188III	TCNNGA	8 cut(s)	248, 368, 618, 663, 808, 884, 923, 955
Hpy8I	GTNNAC	2 cut(s)	295, 755
HpyCH4III	ACNGT	5 cut(s)	276, 383, 673, 965, 1015
HpyCH4V	TGCA	8 cut(s)	284, 476, 554, 682, 755, 784, 815, 820
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 329
HpyF3I	CTNAG	6 cut(s)	45, 153, 182, 194, 313, 891
Hsp92II	CATG	5 cut(s)	230, 329, 520, 868, 926
KspI	CCGCGG	1 cut(s)	611
Kzo9I	GATC	4 cut(s)	105, 185, 625, 775
LmnI	GCTCC	2 cut(s)	74, 886
Lsp1109I	GCAGC	2 cut(s)	194, 332
LweI	GCATC	3 cut(s)	75, 771, 978
MaeI	CTAG	2 cut(s)	98, 758
MaeIII	GTNAC	3 cut(s)	349, 667, 829
MalI	GATC	4 cut(s)	107, 187, 627, 777
MboI	GATC	4 cut(s)	105, 185, 625, 775
MboII	GAAGA	8 cut(s)	23, 78, 121, 175, 383, 419, 551, 695
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	757
MlsI	TGGCCA	1 cut(s)	433
MluCI	AATT	3 cut(s)	124, 148, 532
MluNI	TGGCCA	1 cut(s)	433
MlyI	GAGTC	1 cut(s)	744
MnlI	CCTC	5 cut(s)	145, 310, 451, 759, 986
Mox20I	TGGCCA	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	433
MseI	TTAA	5 cut(s)	423, 491, 510, 765, 870
MslI	CAYNNNNRTG	1 cut(s)	654
Msp20I	TGGCCA	1 cut(s)	433
MspA1I	CMGCKG	2 cut(s)	562, 610
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	2 cut(s)	215, 334
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	2 cut(s)	261, 610
MwoI	GCNNNNNNNGC	2 cut(s)	204, 329
NciI	CCSGG	1 cut(s)	334
NcoI	CCATGG	1 cut(s)	516
NdeII	GATC	4 cut(s)	105, 185, 625, 775
NlaIII	CATG	5 cut(s)	230, 329, 520, 868, 926
NmuCI	GTSAC	3 cut(s)	349, 667, 829
PagI	TCATGA	1 cut(s)	922
PfeI	GAWTC	2 cut(s)	83, 594
PkrI	GCNGC	2 cut(s)	209, 322
PleI	GAGTC	1 cut(s)	743
PpsI	GAGTC	1 cut(s)	743
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	899
PstNI	CAGNNNCTG	1 cut(s)	884
PsuI	RGATCY	1 cut(s)	105
PvuII	CAGCTG	1 cut(s)	562
RsaI	GTAC	4 cut(s)	258, 311, 696, 944
RsaNI	GTAC	4 cut(s)	257, 310, 695, 943
RseI	CAYNNNNRTG	1 cut(s)	654
SacII	CCGCGG	1 cut(s)	611
SaqAI	TTAA	5 cut(s)	423, 491, 510, 765, 870
SatI	GCNGC	2 cut(s)	208, 321
Sau3AI	GATC	4 cut(s)	105, 185, 625, 775
Sau96I	GGNCC	1 cut(s)	899
ScaI	AGTACT	1 cut(s)	311
SchI	GAGTC	1 cut(s)	744
ScrFI	CCNGG	2 cut(s)	215, 334
SduI	GDGCHC	1 cut(s)	757
SfaNI	GCATC	3 cut(s)	75, 771, 978
SfcI	CTRYAG	3 cut(s)	78, 858, 961
Sfr303I	CCGCGG	1 cut(s)	611
SgrBI	CCGCGG	1 cut(s)	611
SinI	GGWCC	1 cut(s)	899
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SpeI	ACTAGT	1 cut(s)	757
Sse9I	AATT	3 cut(s)	124, 148, 532
SsiI	CCGC	2 cut(s)	608, 610
SspI	AATATT	1 cut(s)	804
SspMI	CTAG	2 cut(s)	98, 758
StyD4I	CCNGG	2 cut(s)	213, 332
StyI	CCWWGG	2 cut(s)	516, 935
TaaI	ACNGT	5 cut(s)	276, 383, 673, 965, 1015
TaqI	TCGA	2 cut(s)	9, 394
TasI	AATT	3 cut(s)	124, 148, 532
TatI	WGTACW	3 cut(s)	309, 694, 942
TfiI	GAWTC	2 cut(s)	83, 594
Tru1I	TTAA	5 cut(s)	423, 491, 510, 765, 870
Tru9I	TTAA	5 cut(s)	423, 491, 510, 765, 870
TscAI	CASTG	1 cut(s)	297
TseFI	GTSAC	3 cut(s)	349, 667, 829
TseI	GCWGC	2 cut(s)	207, 320
Tsp45I	GTSAC	3 cut(s)	349, 667, 829
TspDTI	ATGAA	3 cut(s)	48, 483, 939
TspRI	CASTG	1 cut(s)	297
VneI	GTGCAC	1 cut(s)	753
VpaK11BI	GGWCC	1 cut(s)	899
XapI	RAATTY	1 cut(s)	532
XspI	CTAG	2 cut(s)	98, 758
ZrmI	AGTACT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.