Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Forward (+)

2036699 .. 2038807

Gene Structure 2109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46264

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAGTGTCCAAGAGATGAGCATCAAAGGTGAGGAACCTCCCCCTCAGTATATTGTTAAAGAAAGCAAACTTAAGTTTGGAGCTATAGAGTCTTCCCCAGAATTGGGTCAAATCCCCATCATTGATGTCAGTCTCTTCTCCCCATCATCAAGTGATTCTAACCAAGCGAAGTTCGAACTAGACAAACTTAGAACAGCTCTCAGCTCATCAGGCTGCATCCAGGCGGTTGGTCATGGGATATCAAGTTCCTTTCTGGACAAGGTACGCGAAGCTGCGACGCAATTCTTTGAACTCCCAGTGGAAGACAAGGAAAAGTACTCCAGAGCTGTTCATGGTGGCTCTGAAGGGTATGGGAATGATGTCATTGTTTCAGAGAAGCAAGTTCTTGATTGGTCCTATCGCCTAACACTTCGAGTATTTCCTGAAGATCAAAGAAGGCTTAACCTTTGGCCAGAAAATCCAAATGATTTTGGAGAGGTTGTACATGAATATGCAACAAAGGTAAAGTTCATGATGGGGGTTCTGTTTAAGGCCATGGCAAAATCGTTGAAATTGGAAGAGAACAGCTTTTCAGATAAGCTGCTTGGAGAGAGAGCTCTGATGCAAGCAAGATTCAACTTCTATCCACCGTGTTCAAGATCCGATAAAGTTCTTGGTGTGAAGCCACATACAGATAGGTCAGGAGTGACAGTTTTGTTGCAAGACAAAGAAGTTGAAGGTCTTCAAGTTTTGGTAGATGGCAAATGGGTTAGAGTCCCCATCGTGCCTCATGCTATAGTTGTTAATCTTGGTGATCAAATGCAGATAATGAGTAATGGTGTGTTCAAGAGCCCAATGCACAGGGTGGTGACAAATCCAGAAAGGATGAGGCTATCTGTGGCCTTGTTTAATGAACCAGATCCTGAAACTGAGATTAGTCCAGTGGAGAAACTGATAGATGAGGCAAGGCCAAGAGTATACAAAAATGTCAAGAATTATGGTCGCATCAACTACGAATGCTATCAGAGAGGAGAAATAGCACTCGAAACAGTGAAGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

346

Amino Acids

39.04

Weight (kDa)

5.98

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	38 - 153	3.1e-23	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	204 - 299	2.8e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	957
AccII	CGCG	1 cut(s)	267
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	2 cut(s)	633, 893
AcoI	YGGCCR	1 cut(s)	449
AcuI	CTGAAG	2 cut(s)	363, 444
AdeI	CACNNNGTG	1 cut(s)	844
AfaI	GTAC	3 cut(s)	264, 317, 483
AfiI	CCNNNNNNNGG	2 cut(s)	103, 104
AflII	CTTAAG	1 cut(s)	71
AgsI	TTSAA	7 cut(s)	290, 550, 616, 636, 716, 725, 826
AjnI	CCWGG	1 cut(s)	219
AloI	GAACNNNNNNTCC	2 cut(s)	229, 261
AluBI	AGCT	8 cut(s)	83, 197, 204, 272, 326, 567, 580, 596
AluI	AGCT	8 cut(s)	83, 197, 204, 272, 326, 567, 580, 596
Alw21I	GWGCWC	1 cut(s)	598
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	2 cut(s)	633, 893
AlwNI	CAGNNNCTG	1 cut(s)	902
AoxI	GGCC	4 cut(s)	449, 531, 879, 947
ApeKI	GCWGC	3 cut(s)	213, 272, 580
Asp700I	GAANNNNTTC	1 cut(s)	720
AspS9I	GGNCC	1 cut(s)	393
AsuHPI	GGTGA	3 cut(s)	41, 803, 859
AsuII	TTCGAA	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	393
BalI	TGGCCA	1 cut(s)	451
BanII	GRGCYC	2 cut(s)	598, 833
BbsI	GAAGAC	3 cut(s)	84, 309, 713
Bbv12I	GWGCWC	1 cut(s)	598
BbvI	GCAGC	3 cut(s)	200, 259, 567
BccI	CCATC	5 cut(s)	125, 151, 508, 731, 767
BciT130I	CCWGG	1 cut(s)	221
BclI	TGATCA	1 cut(s)	793
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	2 cut(s)	84, 774
BfrI	CTTAAG	1 cut(s)	71
BglII	AGATCT	1 cut(s)	1035
BisI	GCNGC	3 cut(s)	214, 273, 581
BlsI	GCNGC	3 cut(s)	215, 274, 582
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	393
BmgT120I	GGNCC	1 cut(s)	393
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	221
BmrI	ACTGGG	1 cut(s)	290
BmsI	GCATC	4 cut(s)	30, 225, 591, 993
BmuI	ACTGGG	1 cut(s)	290
BpiI	GAAGAC	3 cut(s)	84, 309, 713
BpmI	CTGGAG	1 cut(s)	304
Bpu14I	TTCGAA	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	534
BsaXI	ACNNNNNCTCC	4 cut(s)	465, 495, 675, 705
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 104
Bse1I	ACTGG	2 cut(s)	296, 920
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	2 cut(s)	216, 870
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	103, 104
BseMII	CTCAG	3 cut(s)	59, 214, 900
BseNI	ACTGG	2 cut(s)	296, 920
BseRI	GAGGAG	1 cut(s)	1023
BseXI	GCAGC	3 cut(s)	200, 259, 567
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	4 cut(s)	451, 533, 881, 949
BsiHKAI	GWGCWC	1 cut(s)	598
BslFI	GGGAC	1 cut(s)	740
BslI	CCNNNNNNNGG	2 cut(s)	103, 104
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	740
BsmI	GAATGC	1 cut(s)	1001
BsnI	GGCC	4 cut(s)	451, 533, 881, 949
Bsp119I	TTCGAA	1 cut(s)	174
Bsp1286I	GDGCHC	2 cut(s)	598, 833
Bsp1407I	TGTACA	1 cut(s)	481
Bsp143I	GATC	5 cut(s)	427, 638, 793, 898, 1035
Bsp19I	CCATGG	1 cut(s)	534
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	4 cut(s)	451, 533, 881, 949
BspCNI	CTCAG	3 cut(s)	58, 213, 901
BspFNI	CGCG	1 cut(s)	267
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	1 cut(s)	36
BspPI	GGATC	2 cut(s)	633, 893
BspT104I	TTCGAA	1 cut(s)	174
BspTI	CTTAAG	1 cut(s)	71
BsrGI	TGTACA	1 cut(s)	481
BsrI	ACTGG	2 cut(s)	296, 920
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	5 cut(s)	427, 638, 793, 898, 1035
BssNAI	GTATAC	1 cut(s)	958
BssT1I	CCWWGG	1 cut(s)	534
Bst1107I	GTATAC	1 cut(s)	958
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	3 cut(s)	630, 691, 1030
Bst6I	CTCTTC	2 cut(s)	140, 552
BstAFI	CTTAAG	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	481
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	606
BstDEI	CTNAG	4 cut(s)	45, 188, 200, 909
BstDSI	CCRYGG	1 cut(s)	534
BstF5I	GGATG	2 cut(s)	216, 870
BstFNI	CGCG	1 cut(s)	267
BstKTI	GATC	5 cut(s)	430, 641, 796, 901, 1038
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	5 cut(s)	427, 638, 793, 898, 1035
BstMWI	GCNNNNNNNGC	1 cut(s)	210
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	2 cut(s)	84, 774
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	3 cut(s)	200, 259, 567
BstV2I	GAAGAC	3 cut(s)	84, 309, 713
BstX2I	RGATCY	3 cut(s)	638, 898, 1035
BstXI	CCANNNNNNTGG	1 cut(s)	227
BstYI	RGATCY	3 cut(s)	638, 898, 1035
BstZ17I	GTATAC	1 cut(s)	958
BsuRI	GGCC	4 cut(s)	451, 533, 881, 949
BtgI	CCRYGG	1 cut(s)	534
BtsCI	GGATG	2 cut(s)	216, 870
BtsIMutI	CAGTG	3 cut(s)	303, 927, 1035
Cac8I	GCNNGC	1 cut(s)	606
CaiI	CAGNNNCTG	1 cut(s)	902
CciI	TCATGA	1 cut(s)	510
Cfr13I	GGNCC	1 cut(s)	393
CseI	GACGC	1 cut(s)	286
Csp6I	GTAC	3 cut(s)	263, 316, 482
CviAII	CATG	6 cut(s)	233, 332, 485, 511, 535, 770
CviQI	GTAC	3 cut(s)	263, 316, 482
DdeI	CTNAG	4 cut(s)	45, 188, 200, 909
DpnI	GATC	5 cut(s)	429, 640, 795, 900, 1037
DpnII	GATC	5 cut(s)	427, 638, 793, 898, 1035
DraIII	CACNNNGTG	1 cut(s)	844
EaeI	YGGCCR	1 cut(s)	449
Eam1104I	CTCTTC	2 cut(s)	140, 552
EarI	CTCTTC	2 cut(s)	140, 552
Ecl136II	GAGCTC	1 cut(s)	596
Eco130I	CCWWGG	1 cut(s)	534
Eco24I	GRGCYC	2 cut(s)	598, 833
Eco32I	GATATC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	393
Eco53kI	GAGCTC	1 cut(s)	596
Eco57I	CTGAAG	2 cut(s)	363, 444
EcoICRI	GAGCTC	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	219
EcoRV	GATATC	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	534
EcoT38I	GRGCYC	2 cut(s)	598, 833
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	6 cut(s)	236, 335, 488, 514, 538, 773
FaqI	GGGAC	1 cut(s)	740
FatI	CATG	6 cut(s)	232, 331, 484, 510, 534, 769
FbaI	TGATCA	1 cut(s)	793
FblI	GTMKAC	1 cut(s)	957
Fnu4HI	GCNGC	3 cut(s)	214, 273, 581
FokI	GGATG	2 cut(s)	203, 877
FriOI	GRGCYC	2 cut(s)	598, 833
Fsp4HI	GCNGC	3 cut(s)	214, 273, 581
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	3 cut(s)	214, 273, 581
GsuI	CTGGAG	1 cut(s)	304
HaeIII	GGCC	4 cut(s)	451, 533, 881, 949
HgaI	GACGC	1 cut(s)	286
Hin1II	CATG	6 cut(s)	236, 335, 488, 514, 538, 773
HinfI	GANTC	4 cut(s)	89, 155, 612, 753
HphI	GGTGA	3 cut(s)	41, 803, 859
Hpy166II	GTNNAC	1 cut(s)	958
Hpy188I	TCNGA	6 cut(s)	343, 373, 574, 600, 643, 1005
Hpy8I	GTNNAC	1 cut(s)	958
Hpy99I	CGWCG	1 cut(s)	280
HpyAV	CCTTC	3 cut(s)	338, 429, 710
HpyCH4III	ACNGT	3 cut(s)	630, 691, 1030
HpyCH4V	TGCA	6 cut(s)	216, 494, 604, 700, 802, 838
HpyF10VI	GCNNNNNNNGC	1 cut(s)	210
HpyF3I	CTNAG	4 cut(s)	45, 188, 200, 909
Hsp92II	CATG	6 cut(s)	236, 335, 488, 514, 538, 773
Ksp22I	TGATCA	1 cut(s)	793
Kzo9I	GATC	5 cut(s)	427, 638, 793, 898, 1035
LmnI	GCTCC	1 cut(s)	80
Lsp1109I	GCAGC	3 cut(s)	200, 259, 567
LweI	GCATC	4 cut(s)	30, 225, 591, 993
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	2 cut(s)	685, 847
MalI	GATC	5 cut(s)	429, 640, 795, 900, 1037
MboI	GATC	5 cut(s)	427, 638, 793, 898, 1035
MboII	GAAGA	6 cut(s)	84, 127, 314, 437, 569, 713
MflI	RGATCY	3 cut(s)	638, 898, 1035
MhlI	GDGCHC	2 cut(s)	598, 833
MlsI	TGGCCA	1 cut(s)	451
MluCI	AATT	4 cut(s)	101, 281, 551, 973
MluNI	TGGCCA	1 cut(s)	451
MlyI	GAGTC	2 cut(s)	98, 762
MnlI	CCTC	8 cut(s)	25, 48, 54, 469, 777, 861, 934, 1001
Mox20I	TGGCCA	1 cut(s)	451
MroXI	GAANNNNTTC	1 cut(s)	720
MscI	TGGCCA	1 cut(s)	451
MseI	TTAA	6 cut(s)	57, 72, 441, 528, 783, 888
MslI	CAYNNNNRTG	1 cut(s)	489
Msp20I	TGGCCA	1 cut(s)	451
MspCI	CTTAAG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	221
Mva1269I	GAATGC	1 cut(s)	1001
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	210
NcoI	CCATGG	1 cut(s)	534
NdeII	GATC	5 cut(s)	427, 638, 793, 898, 1035
NlaIII	CATG	6 cut(s)	236, 335, 488, 514, 538, 773
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	2 cut(s)	685, 847
NspV	TTCGAA	1 cut(s)	174
PagI	TCATGA	1 cut(s)	510
PctI	GAATGC	1 cut(s)	1001
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	2 cut(s)	155, 612
PkrI	GCNGC	3 cut(s)	215, 274, 582
PleI	GAGTC	2 cut(s)	97, 761
PpsI	GAGTC	2 cut(s)	97, 761
Psp124BI	GAGCTC	1 cut(s)	598
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	393
PstNI	CAGNNNCTG	1 cut(s)	902
PsuI	RGATCY	3 cut(s)	638, 898, 1035
RsaI	GTAC	3 cut(s)	264, 317, 483
RsaNI	GTAC	3 cut(s)	263, 316, 482
RseI	CAYNNNNRTG	1 cut(s)	489
SacI	GAGCTC	1 cut(s)	598
SaqAI	TTAA	6 cut(s)	57, 72, 441, 528, 783, 888
SatI	GCNGC	3 cut(s)	214, 273, 581
Sau3AI	GATC	5 cut(s)	427, 638, 793, 898, 1035
Sau96I	GGNCC	1 cut(s)	393
ScaI	AGTACT	1 cut(s)	317
SchI	GAGTC	2 cut(s)	98, 762
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	2 cut(s)	598, 833
SfaNI	GCATC	4 cut(s)	30, 225, 591, 993
SfcI	CTRYAG	2 cut(s)	84, 774
SfuI	TTCGAA	1 cut(s)	174
SinI	GGWCC	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	4 cut(s)	101, 281, 551, 973
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	1 cut(s)	179
SstI	GAGCTC	1 cut(s)	598
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	3 cut(s)	630, 691, 1030
TaqI	TCGA	3 cut(s)	174, 412, 1023
TasI	AATT	4 cut(s)	101, 281, 551, 973
TatI	WGTACW	2 cut(s)	315, 481
TfiI	GAWTC	2 cut(s)	155, 612
Tru1I	TTAA	6 cut(s)	57, 72, 441, 528, 783, 888
Tru9I	TTAA	6 cut(s)	57, 72, 441, 528, 783, 888
TscAI	CASTG	3 cut(s)	303, 927, 1035
TseFI	GTSAC	2 cut(s)	685, 847
TseI	GCWGC	3 cut(s)	213, 272, 580
Tsp45I	GTSAC	2 cut(s)	685, 847
TspDTI	ATGAA	4 cut(s)	320, 499, 501, 906
TspRI	CASTG	3 cut(s)	303, 927, 1035
Vha464I	CTTAAG	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	393
XmiI	GTMKAC	1 cut(s)	957
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	1 cut(s)	179
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.