Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002033

Physical Location & Seq

Genomic Coordinates Forward (+)

1808579 .. 1814933

Gene Structure 6355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015841

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAGTGTCCAAGAGATGAGCATCAAAGCTGAGGAACCTCCCCCTCAGTATATTGTTAAAGAAAGCAACTTTGGAGCTATAGAGTCTTCCCCAGAATTGGGTCAAATCCCCATCATTGATGTCAGTCTCTTCTCCCCATCATCAATTGATTCTAAGCAAGTGAAGATCGAACTAGACAAACTTAGAACAACTCTCAGCTCATCAGGCTGCTTTCAGGCAATTGGTCATGGGATATCAAGTTCCTTTCTGGACAAGGTACGTGAAGCTGCGACACAATTCTTTGAACTTCCAGTGGAAGAGAAGCGAAAGTACTCCAGAGCTGTTCATGGTGGCTCTGAAGGGTATGGGAATGATGCCATTGTCTCAGAGAAGCAAGTTCTTGATTGGTCCTATCGCCTAACACTTCGAGTATTACCTGAAGATCAAAGAAGGCTTAACCTTTGGCCAGAAAATCCAAATGATTTTAGAGAGGTTGTACATGAATATGCAACAAAGGTAAAGTTCATGATGGGGGTTCTGTTTAAGGCCATGGCGAAATCGTTGAATTTGGAAGAGAACAGCTTTTCGGATAAGCTTCTTGGAGAGAGAGCTCTGATGCAAGCAAGATTCAACTTCTATCTGCGGAATATGTCAGGAGTGATGGTTTTGTTGCAAGACGAAGAAGTAGAAGGTCTTCAAGTTTTAGTGGACAGCAAATGGGTTCGAGTCCCCATTGTGCCTCATGCTATAGTTGTTAATCTTGGTGATCAAATGCAGATTATGAGTAATGGTATATTCAAGAGCCCAATGCACAGAGTTGTGACAAATCCAGAAAGAATGGGACTATCTGTGGCCTTATTTAATGAACCTGATCCTGAAACTGAGATTAGTCCAGTAGAGAAATTGATAGATGAGACAAGGCCAAGGTCATACAAAAATGTCAAGAATTATGGTCATATCAACTATGAATGCTATCAGAGAGGGGAGATAGCACTTGAAACTGTAAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

331

Amino Acids

37.49

Weight (kDa)

5.46

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	36 - 151	2.8e-23	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	210 - 282	2.5e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002033)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02111 FvH4_1g02112 FvH4_1g02120
malus_domestica	MD02G1019300.v1.1 MD02G1019600.v1.1
prunus_persica	Prupe.7G251800_v2.0.a1 Prupe.7G251800_v2.0.a1
pyrus_communis	pycom02g01720 pycom02g01730 pycom02g01740
rosa_chinensis	RchiOBHm_Chr2g0087171 RchiOBHm_Chr2g0087181 RchiOBHm_Chr2g0087191 RchiOBHm_Chr2g0087251 RchiOBHm_Chr6g0295511
rosa_laevigata	RLG00000011795 RLG00000015839 RLG00000015840 RLG00000015841 RLG00000015843 RLG00000015847
rosa_multiflora	Rmu_co8200202.1_g000001 Rmu_sc0003367.1_g000007 Rmu_sc0009355.1_g000005 Rmu_sc0009802.1_g000001 Rmu_sc0011562.1_g000001 Rmu_sc0018794.1_g000006 Rmu_ssc0000239.1_g000011
rosa_roxburghii	Rroxscaffold_2G00153820 Rroxscaffold_7G00172410
rosa_rugosa	Rorug01G0473200 Rorug01G0473600 Rorug06G0251600
rosa_samantha	Rh2AG026300 Rh2AG026500 Rh2AG027000 Rh2CG026800 Rh2CG026900 Rh2CG027000 Rh2CG027400 Rh2DG026600 Rh6BG373100 Rh6CG379300 Rh6DG365800
rosa_wichuraiana	Rw2G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	622
AclWI	GGATC	1 cut(s)	845
AcoI	YGGCCR	1 cut(s)	443
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	2 cut(s)	357, 438
AfaI	GTAC	3 cut(s)	258, 311, 477
AfiI	CCNNNNNNNGG	2 cut(s)	97, 98
AgsI	TTSAA	6 cut(s)	284, 544, 610, 677, 778, 977
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AloI	GAACNNNNNNTCC	2 cut(s)	223, 255
AluBI	AGCT	8 cut(s)	29, 77, 198, 266, 320, 561, 574, 590
AluI	AGCT	8 cut(s)	29, 77, 198, 266, 320, 561, 574, 590
Alw21I	GWGCWC	1 cut(s)	592
Alw26I	GTCTC	3 cut(s)	131, 367, 887
AlwI	GGATC	1 cut(s)	845
AoxI	GGCC	4 cut(s)	443, 525, 831, 899
ApeKI	GCWGC	2 cut(s)	207, 266
ApoI	RAATTY	1 cut(s)	544
Asp700I	GAANNNNTTC	1 cut(s)	672
AspS9I	GGNCC	1 cut(s)	387
AsuHPI	GGTGA	1 cut(s)	755
AvaII	GGWCC	1 cut(s)	387
BalI	TGGCCA	1 cut(s)	445
BanII	GRGCYC	2 cut(s)	592, 785
BarI	GAAGNNNNNNTAC	4 cut(s)	293, 325, 657, 689
BbsI	GAAGAC	2 cut(s)	78, 665
Bbv12I	GWGCWC	1 cut(s)	592
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	194, 253
BccI	CCATC	4 cut(s)	119, 145, 502, 634
BclI	TGATCA	1 cut(s)	745
BcoDI	GTCTC	3 cut(s)	131, 367, 887
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	2 cut(s)	78, 726
BisI	GCNGC	2 cut(s)	208, 267
BlsI	GCNGC	2 cut(s)	209, 268
BmcAI	AGTACT	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	387
BmiI	GGNNCC	1 cut(s)	36
BmsI	GCATC	3 cut(s)	30, 343, 585
BpiI	GAAGAC	2 cut(s)	78, 665
BpmI	CTGGAG	1 cut(s)	298
Bpu10I	CCTNAGC	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	528, 902
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 98
Bse1I	ACTGG	2 cut(s)	290, 872
Bse8I	GATNNNNATC	1 cut(s)	20
BseDI	CCNNGG	2 cut(s)	528, 902
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	97, 98
BseMII	CTCAG	5 cut(s)	21, 59, 208, 378, 852
BseNI	ACTGG	2 cut(s)	290, 872
BseXI	GCAGC	2 cut(s)	194, 253
BshFI	GGCC	4 cut(s)	445, 527, 833, 901
BsiHKAI	GWGCWC	1 cut(s)	592
BslFI	GGGAC	2 cut(s)	692, 834
BslI	CCNNNNNNNGG	2 cut(s)	97, 98
BsmAI	GTCTC	3 cut(s)	131, 367, 887
BsmFI	GGGAC	2 cut(s)	692, 834
BsmI	GAATGC	1 cut(s)	953
BsnI	GGCC	4 cut(s)	445, 527, 833, 901
Bsp1286I	GDGCHC	2 cut(s)	592, 785
Bsp1407I	TGTACA	1 cut(s)	475
Bsp143I	GATC	4 cut(s)	165, 421, 745, 850
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	1 cut(s)	622
BspANI	GGCC	4 cut(s)	445, 527, 833, 901
BspCNI	CTCAG	5 cut(s)	22, 58, 207, 377, 853
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	845
BsrGI	TGTACA	1 cut(s)	475
BsrI	ACTGG	2 cut(s)	290, 872
BssECI	CCNNGG	2 cut(s)	528, 902
BssMI	GATC	4 cut(s)	165, 421, 745, 850
BssT1I	CCWWGG	2 cut(s)	528, 902
Bst4CI	ACNGT	1 cut(s)	982
Bst6I	CTCTTC	3 cut(s)	134, 291, 546
BstAUI	TGTACA	1 cut(s)	475
BstBAI	YACGTR	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	7 cut(s)	30, 45, 153, 182, 194, 364, 861
BstDSI	CCRYGG	1 cut(s)	528
BstKTI	GATC	4 cut(s)	168, 424, 748, 853
BstMAI	GTCTC	3 cut(s)	131, 367, 887
BstMBI	GATC	4 cut(s)	165, 421, 745, 850
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstSFI	CTRYAG	2 cut(s)	78, 726
BstV1I	GCAGC	2 cut(s)	194, 253
BstV2I	GAAGAC	2 cut(s)	78, 665
BsuRI	GGCC	4 cut(s)	445, 527, 833, 901
BtgI	CCRYGG	1 cut(s)	528
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	600
CciI	TCATGA	1 cut(s)	504
Cfr13I	GGNCC	1 cut(s)	387
Csp6I	GTAC	3 cut(s)	257, 310, 476
CviAII	CATG	6 cut(s)	227, 326, 479, 505, 529, 722
CviQI	GTAC	3 cut(s)	257, 310, 476
DdeI	CTNAG	7 cut(s)	30, 45, 153, 182, 194, 364, 861
DpnI	GATC	4 cut(s)	167, 423, 747, 852
DpnII	GATC	4 cut(s)	165, 421, 745, 850
EaeI	YGGCCR	1 cut(s)	443
Eam1104I	CTCTTC	3 cut(s)	134, 291, 546
EarI	CTCTTC	3 cut(s)	134, 291, 546
Ecl136II	GAGCTC	1 cut(s)	590
Eco130I	CCWWGG	2 cut(s)	528, 902
Eco24I	GRGCYC	2 cut(s)	592, 785
Eco32I	GATATC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	387
Eco53kI	GAGCTC	1 cut(s)	590
Eco57I	CTGAAG	2 cut(s)	357, 438
EcoICRI	GAGCTC	1 cut(s)	590
EcoRV	GATATC	1 cut(s)	234
EcoT14I	CCWWGG	2 cut(s)	528, 902
EcoT38I	GRGCYC	2 cut(s)	592, 785
ErhI	CCWWGG	2 cut(s)	528, 902
FaeI	CATG	6 cut(s)	230, 329, 482, 508, 532, 725
FaqI	GGGAC	2 cut(s)	692, 834
FatI	CATG	6 cut(s)	226, 325, 478, 504, 528, 721
FbaI	TGATCA	1 cut(s)	745
Fnu4HI	GCNGC	2 cut(s)	208, 267
FriOI	GRGCYC	2 cut(s)	592, 785
Fsp4HI	GCNGC	2 cut(s)	208, 267
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	2 cut(s)	208, 267
GsuI	CTGGAG	1 cut(s)	298
HaeIII	GGCC	4 cut(s)	445, 527, 833, 901
Hin1II	CATG	6 cut(s)	230, 329, 482, 508, 532, 725
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	4 cut(s)	83, 149, 606, 705
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	1 cut(s)	688
Hpy188I	TCNGA	6 cut(s)	337, 367, 568, 594, 957, 992
Hpy188III	TCNNGA	9 cut(s)	248, 315, 380, 505, 633, 778, 809, 854, 922
Hpy8I	GTNNAC	1 cut(s)	688
HpyAV	CCTTC	3 cut(s)	332, 423, 662
HpyCH4III	ACNGT	1 cut(s)	982
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	5 cut(s)	488, 598, 652, 754, 790
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	7 cut(s)	30, 45, 153, 182, 194, 364, 861
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	6 cut(s)	230, 329, 482, 508, 532, 725
Ksp22I	TGATCA	1 cut(s)	745
Kzo9I	GATC	4 cut(s)	165, 421, 745, 850
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	2 cut(s)	194, 253
LweI	GCATC	3 cut(s)	30, 343, 585
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	1 cut(s)	799
MalI	GATC	4 cut(s)	167, 423, 747, 852
MboI	GATC	4 cut(s)	165, 421, 745, 850
MboII	GAAGA	8 cut(s)	78, 121, 175, 308, 431, 563, 665, 671
MfeI	CAATTG	2 cut(s)	144, 219
MhlI	GDGCHC	2 cut(s)	592, 785
MlsI	TGGCCA	1 cut(s)	445
MluCI	AATT	7 cut(s)	95, 144, 219, 275, 544, 881, 925
MluNI	TGGCCA	1 cut(s)	445
MlyI	GAGTC	2 cut(s)	92, 714
MnlI	CCTC	6 cut(s)	25, 48, 54, 463, 729, 953
Mox20I	TGGCCA	1 cut(s)	445
MroXI	GAANNNNTTC	1 cut(s)	672
MscI	TGGCCA	1 cut(s)	445
MseI	TTAA	5 cut(s)	57, 435, 522, 735, 840
MslI	CAYNNNNRTG	1 cut(s)	483
Msp20I	TGGCCA	1 cut(s)	445
MunI	CAATTG	2 cut(s)	144, 219
Mva1269I	GAATGC	1 cut(s)	953
MwoI	GCNNNNNNNGC	1 cut(s)	204
NcoI	CCATGG	1 cut(s)	528
NdeII	GATC	4 cut(s)	165, 421, 745, 850
NlaIII	CATG	6 cut(s)	230, 329, 482, 508, 532, 725
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	799
PagI	TCATGA	1 cut(s)	504
PctI	GAATGC	1 cut(s)	953
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	2 cut(s)	149, 606
PkrI	GCNGC	2 cut(s)	209, 268
PleI	GAGTC	2 cut(s)	91, 713
PpsI	GAGTC	2 cut(s)	91, 713
Ppu21I	YACGTR	1 cut(s)	260
Psp124BI	GAGCTC	1 cut(s)	592
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	387
RsaI	GTAC	3 cut(s)	258, 311, 477
RsaNI	GTAC	3 cut(s)	257, 310, 476
RseI	CAYNNNNRTG	1 cut(s)	483
SacI	GAGCTC	1 cut(s)	592
SaqAI	TTAA	5 cut(s)	57, 435, 522, 735, 840
SatI	GCNGC	2 cut(s)	208, 267
Sau3AI	GATC	4 cut(s)	165, 421, 745, 850
Sau96I	GGNCC	1 cut(s)	387
ScaI	AGTACT	1 cut(s)	311
SchI	GAGTC	2 cut(s)	92, 714
SduI	GDGCHC	2 cut(s)	592, 785
SfaNI	GCATC	3 cut(s)	30, 343, 585
SfcI	CTRYAG	2 cut(s)	78, 726
SinI	GGWCC	1 cut(s)	387
SmiMI	CAYNNNNRTG	1 cut(s)	483
Sse9I	AATT	7 cut(s)	95, 144, 219, 275, 544, 881, 925
SsiI	CCGC	1 cut(s)	622
SspMI	CTAG	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	592
StyI	CCWWGG	2 cut(s)	528, 902
TaaI	ACNGT	1 cut(s)	982
TaiI	ACGT	1 cut(s)	262
TaqI	TCGA	3 cut(s)	168, 406, 703
TasI	AATT	7 cut(s)	95, 144, 219, 275, 544, 881, 925
TatI	WGTACW	2 cut(s)	309, 475
TfiI	GAWTC	2 cut(s)	149, 606
Tru1I	TTAA	5 cut(s)	57, 435, 522, 735, 840
Tru9I	TTAA	5 cut(s)	57, 435, 522, 735, 840
TscAI	CASTG	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	799
TseI	GCWGC	2 cut(s)	207, 266
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	5 cut(s)	314, 493, 495, 858, 960
TspRI	CASTG	1 cut(s)	297
VpaK11BI	GGWCC	1 cut(s)	387
XapI	RAATTY	1 cut(s)	544
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	1 cut(s)	173
ZrmI	AGTACT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.