Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Forward (+)

15391449 .. 15392483

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23542.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGATTGATATAATTGTTGCTGCATTATGTGAAAAGAGCATTGCCTTCATTGAGTTCCATGTCAAGATGCAGGGCGTTGAAACTTCGTTTTTAATTTGGGTGCTTGCAAGTAGCAAACATATCTTGGCATCTCATATTGCCAATCAGATGGTGGGCTGGAATCTTACTGTTGAGCTTTATGAGAAATCAACAAACAATGAACTTGAATCTTGGGTAGTTGCTACTACCAATTTGGTCATTGATGCTCTGACCACTCTTACAACACTTTCCCTTGTCACTGTGGATATTTATGTTATGTACAAGACAGTAATGTTTCATTTGCTTCAAGCGAAATCCTCAAAGGTAGATGCTTTTGGTACTGCTGTTGTTCCAGGTGCAATCTATATGAGCCTAAACGGGACAGCTTACATGGTTAGTGGCTGTTGCAGAGACATTGCTCCCAGTTGGTTGTCAAAATTTCAGGTGGTTCAGTTTTGCAATTTAAGTGATGTATGGTTGTTAGGCTCTCTGCTGATTAAGAGAGCTAGCACCATTCTTCTGCTGGTTGATCTACTGATCTTGACATTCTCATCTGGAAACCTAGATTTTCAGTTGGAGGATGAATGGGCCAAAACTCCACAAGAGAAAAGGTGCTCCAGTTTCCTGATTTATGAAGAAAGTGGCATTGTGGGGTATGTTGCAAATCTACAGGAGAAACAACTCCATGCTCTTATAATTGGCACTAGCTTGGTTGGTAACATAGGTGATGGAGCAACGCCACCAGCTGGGCTACTGACAGACATAGTTCAAGCCTCTCAAGCTTGGCTACTTGCTGGAAAAGCTTTCTCATTGCTCACCTCTCTGATTCCTTGTGCACTGCTGATATCAATCACACAAGTGATAAGTACCATTGCTGCTGCATTTGCTCAGTTTATCAGCGCGGTTTACAGGCACATCAATGCTAAGACCTCAACACATATCGCTGCACTCAAAATTTTGAGCCATCCATCTCCACATTATCACTTGTTAGACTTTTGCACAGGTTATGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

345

Amino Acids

37.56

Weight (kDa)

6.04

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	713
AccB7I	CCANNNNNTGG	1 cut(s)	764
AccII	CGCG	1 cut(s)	920
AciI	CCGC	1 cut(s)	920
AcsI	RAATTY	2 cut(s)	455, 972
AfaI	GTAC	3 cut(s)	299, 358, 886
AfiI	CCNNNNNNNGG	1 cut(s)	764
AgsI	TTSAA	4 cut(s)	80, 206, 326, 788
AjnI	CCWGG	1 cut(s)	370
AleI	CACNNNNGTG	1 cut(s)	875
AluBI	AGCT	7 cut(s)	175, 404, 524, 726, 764, 800, 821
AluI	AGCT	7 cut(s)	175, 404, 524, 726, 764, 800, 821
Alw21I	GWGCWC	2 cut(s)	635, 856
Alw26I	GTCTC	1 cut(s)	423
Alw44I	GTGCAC	1 cut(s)	852
AoxI	GGCC	1 cut(s)	606
ApaLI	GTGCAC	1 cut(s)	852
ApeKI	GCWGC	4 cut(s)	20, 893, 896, 962
ApoI	RAATTY	2 cut(s)	455, 972
AspLEI	GCGC	1 cut(s)	920
AspS9I	GGNCC	1 cut(s)	606
AsuHPI	GGTGA	2 cut(s)	755, 826
AsuNHI	GCTAGC	1 cut(s)	524
BaeGI	GKGCMC	1 cut(s)	856
BaeI	ACNNNNGTAYC	2 cut(s)	348, 381
Bbv12I	GWGCWC	2 cut(s)	635, 856
BbvI	GCAGC	4 cut(s)	7, 880, 883, 949
BccI	CCATC	4 cut(s)	142, 740, 990, 994
BciT130I	CCWGG	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	3 cut(s)	525, 581, 723
BfmI	CTRYAG	1 cut(s)	686
BisI	GCNGC	4 cut(s)	21, 894, 897, 963
BlsI	GCNGC	4 cut(s)	22, 895, 898, 964
Bme1390I	CCNGG	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	606
BmrFI	CCNGG	1 cut(s)	372
BmrI	ACTGGG	1 cut(s)	435
BmsI	GCATC	4 cut(s)	57, 137, 232, 337
BmtI	GCTAGC	1 cut(s)	528
BmuI	ACTGGG	1 cut(s)	435
BpmI	CTGGAG	1 cut(s)	619
BpuEI	CTTGAG	1 cut(s)	780
BsaBI	GATNNNNATC	1 cut(s)	866
Bsc4I	CCNNNNNNNGG	1 cut(s)	764
Bse1I	ACTGG	2 cut(s)	441, 636
Bse3DI	GCAATG	4 cut(s)	39, 432, 827, 888
Bse8I	GATNNNNATC	1 cut(s)	866
BseBI	CCWGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	604, 982
BseJI	GATNNNNATC	1 cut(s)	866
BseLI	CCNNNNNNNGG	1 cut(s)	764
BseMI	GCAATG	4 cut(s)	39, 432, 827, 888
BseMII	CTCAG	1 cut(s)	920
BseNI	ACTGG	2 cut(s)	441, 636
BseSI	GKGCMC	1 cut(s)	856
BseXI	GCAGC	4 cut(s)	7, 880, 883, 949
BseYI	CCCAGC	1 cut(s)	764
BsgI	GTGCAG	1 cut(s)	948
Bsh1236I	CGCG	1 cut(s)	920
BshFI	GGCC	1 cut(s)	608
BsiHKAI	GWGCWC	2 cut(s)	635, 856
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	1 cut(s)	764
BsmAI	GTCTC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	412
BsnI	GGCC	1 cut(s)	608
Bsp1286I	GDGCHC	2 cut(s)	635, 856
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	547, 555
BspACI	CCGC	1 cut(s)	920
BspANI	GGCC	1 cut(s)	608
BspCNI	CTCAG	1 cut(s)	919
BspFNI	CGCG	1 cut(s)	920
BspOI	GCTAGC	1 cut(s)	528
BsrDI	GCAATG	4 cut(s)	39, 432, 827, 888
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	441, 636
BssMI	GATC	2 cut(s)	547, 555
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	3 cut(s)	169, 280, 307
BstAUI	TGTACA	1 cut(s)	297
BstC8I	GCNNGC	2 cut(s)	105, 526
BstDEI	CTNAG	2 cut(s)	906, 942
BstF5I	GGATG	2 cut(s)	604, 982
BstFNI	CGCG	1 cut(s)	920
BstHHI	GCGC	1 cut(s)	920
BstKTI	GATC	2 cut(s)	550, 558
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	2 cut(s)	547, 555
BstMWI	GCNNNNNNNGC	3 cut(s)	797, 818, 902
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	686
BstSLI	GKGCMC	1 cut(s)	856
BstUI	CGCG	1 cut(s)	920
BstV1I	GCAGC	4 cut(s)	7, 880, 883, 949
BstXI	CCANNNNNNTGG	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	608
BtsCI	GGATG	2 cut(s)	604, 982
BtsI	GCAGTG	1 cut(s)	854
BtsIMutI	CAGTG	2 cut(s)	276, 854
Cac8I	GCNNGC	2 cut(s)	105, 526
CfoI	GCGC	1 cut(s)	920
Cfr13I	GGNCC	1 cut(s)	606
Csp6I	GTAC	3 cut(s)	298, 357, 885
CviAII	CATG	3 cut(s)	59, 409, 704
CviQI	GTAC	3 cut(s)	298, 357, 885
DdeI	CTNAG	2 cut(s)	906, 942
DpnI	GATC	2 cut(s)	549, 557
DpnII	GATC	2 cut(s)	547, 555
Eco32I	GATATC	1 cut(s)	864
EcoRII	CCWGG	1 cut(s)	370
EcoRV	GATATC	1 cut(s)	864
FaeI	CATG	3 cut(s)	62, 412, 707
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	3 cut(s)	58, 408, 703
Fnu4HI	GCNGC	4 cut(s)	21, 894, 897, 963
FokI	GGATG	2 cut(s)	611, 969
Fsp4HI	GCNGC	4 cut(s)	21, 894, 897, 963
FspBI	CTAG	3 cut(s)	525, 581, 723
GlaI	GCGC	1 cut(s)	919
GluI	GCNGC	4 cut(s)	21, 894, 897, 963
GsaI	CCCAGC	1 cut(s)	768
GsuI	CTGGAG	1 cut(s)	619
HaeIII	GGCC	1 cut(s)	608
HhaI	GCGC	1 cut(s)	920
Hin1II	CATG	3 cut(s)	62, 412, 707
Hin6I	GCGC	1 cut(s)	918
HinP1I	GCGC	1 cut(s)	918
HindIII	AAGCTT	2 cut(s)	798, 819
HinfI	GANTC	3 cut(s)	160, 206, 844
HphI	GGTGA	2 cut(s)	755, 826
Hpy166II	GTNNAC	2 cut(s)	854, 925
Hpy188I	TCNGA	3 cut(s)	147, 249, 843
Hpy188III	TCNNGA	4 cut(s)	64, 559, 573, 643
Hpy8I	GTNNAC	2 cut(s)	854, 925
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	3 cut(s)	169, 280, 307
HpyF10VI	GCNNNNNNNGC	3 cut(s)	797, 818, 902
HpyF3I	CTNAG	2 cut(s)	906, 942
Hsp92II	CATG	3 cut(s)	62, 412, 707
HspAI	GCGC	1 cut(s)	918
Kzo9I	GATC	2 cut(s)	547, 555
LmnI	GCTCC	3 cut(s)	442, 638, 749
Lsp1109I	GCAGC	4 cut(s)	7, 880, 883, 949
LweI	GCATC	4 cut(s)	57, 137, 232, 337
MaeI	CTAG	3 cut(s)	525, 581, 723
MaeIII	GTNAC	2 cut(s)	274, 734
MalI	GATC	2 cut(s)	549, 557
MboI	GATC	2 cut(s)	547, 555
MboII	GAAGA	2 cut(s)	527, 665
MhlI	GDGCHC	2 cut(s)	635, 856
MluCI	AATT	7 cut(s)	12, 93, 229, 455, 478, 714, 972
MmeI	TCCRAC	1 cut(s)	573
MnlI	CCTC	5 cut(s)	346, 589, 802, 847, 958
MseI	TTAA	3 cut(s)	92, 482, 516
MslI	CAYNNNNRTG	2 cut(s)	875, 936
MspA1I	CMGCKG	1 cut(s)	764
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
MvnI	CGCG	1 cut(s)	920
MwoI	GCNNNNNNNGC	3 cut(s)	797, 818, 902
NdeII	GATC	2 cut(s)	547, 555
NheI	GCTAGC	1 cut(s)	524
NlaIII	CATG	3 cut(s)	62, 412, 707
NmuCI	GTSAC	1 cut(s)	274
OliI	CACNNNNGTG	1 cut(s)	875
PfeI	GAWTC	3 cut(s)	160, 206, 844
PflMI	CCANNNNNTGG	1 cut(s)	764
PkrI	GCNGC	4 cut(s)	22, 895, 898, 964
PsiI	TTATAA	1 cut(s)	713
Psp6I	CCWGG	1 cut(s)	370
PspFI	CCCAGC	1 cut(s)	764
PspGI	CCWGG	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	606
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	3 cut(s)	299, 358, 886
RsaNI	GTAC	3 cut(s)	298, 357, 885
RseI	CAYNNNNRTG	2 cut(s)	875, 936
SaqAI	TTAA	3 cut(s)	92, 482, 516
SatI	GCNGC	4 cut(s)	21, 894, 897, 963
Sau3AI	GATC	2 cut(s)	547, 555
Sau96I	GGNCC	1 cut(s)	606
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	2 cut(s)	635, 856
SfaNI	GCATC	4 cut(s)	57, 137, 232, 337
SfcI	CTRYAG	1 cut(s)	686
SmiMI	CAYNNNNRTG	2 cut(s)	875, 936
SmlI	CTYRAG	1 cut(s)	795
SmoI	CTYRAG	1 cut(s)	795
Sse9I	AATT	7 cut(s)	12, 93, 229, 455, 478, 714, 972
SsiI	CCGC	1 cut(s)	920
SspMI	CTAG	3 cut(s)	525, 581, 723
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	3 cut(s)	169, 280, 307
TasI	AATT	7 cut(s)	12, 93, 229, 455, 478, 714, 972
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	3 cut(s)	160, 206, 844
Tru1I	TTAA	3 cut(s)	92, 482, 516
Tru9I	TTAA	3 cut(s)	92, 482, 516
TscAI	CASTG	2 cut(s)	283, 861
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	4 cut(s)	20, 893, 896, 962
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	5 cut(s)	37, 213, 305, 615, 666
TspRI	CASTG	2 cut(s)	283, 861
Van91I	CCANNNNNTGG	1 cut(s)	764
VneI	GTGCAC	1 cut(s)	852
XapI	RAATTY	2 cut(s)	455, 972
XcmI	CCANNNNNNNNNTGG	2 cut(s)	148, 538
XspI	CTAG	3 cut(s)	525, 581, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.