Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Forward (+)

6008202 .. 6021412

Gene Structure 13211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG076500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGGCTTTGGGTAAGACTCTAACTTTGGCTTCCTTGATTGCTTTTGAAAAATATGGTAGTGGCAATGGCAACAGTGCTAGTGCAGATGAAAGCATACCGTATGATAATGAAATGGGAGAGGATAGCAGTGAGAAGGAAGAATTTATGAGTGTAACTGATAAGGGTCACCAAAATTGGGGTAAAGTAACTGGTGAATACCTTCATTTCCCTAGGGGTGGAACTCAATTTAAGAATGGTGCTCTTCACAATAATGATTTTATTCAAAAATCTCTTCCTGAACGCGTGATATTGGATGTTGGGTGTGGTAACCTGCCTTTAGAGCTTAATCATGTCTTGCGATCTGGAGGTTACTTTGTGTGGTCTGCAACTCTAATTTACCAAAACCTTCCTGACGATGTTGGCATCTGGAAAGTGATGTCTGAACTAATACAGTCAAATTGCTGGGATTTGGTGATGATTAGAAACGATAAGCTCAATCAAGTCACTGATGCTATCTATAGAAAACCATCTACCAATGAGTGCTATACTGAAAGAGCACAAAATCAGCCTCCTCTTTGCATGTTCATTGAAATGTCAAAGTACCAACTAAGTTCACTTCTTAGCTCTCGCTTTAATTGCAAATCTCCAGCACTCCGAACCTGTAATCCCTCCAAAAGTTCAGTGGACACTCTCTATGTATATCCGAAGCTTGATTATTTTGCACTTGGTTTCGCAGAACCCTCTATGAAATCCAATTTGAGTTCCTGCAAAGAAGATCACCCTGGTGTAATAGATGGATTCAACCCAGATGAAAGCAAGGAATTTCAGGAGTTTCTTTATGATAGCACTGATATTGATACTGGTTATATTGGAGATGATTCAACAGACTTGTCAGGCGGCAATTTTCCCCAGCCTACAATTAAACAACATATAGATAAAAGATCTATGTCAGCTGAGAGGGCTCCATTGCTTTCCAATGGAAATAGGGACTGTGCAATTGTGGCAGTTGATAAGATTGTTCCTTGTATCAATGGAGAACGATCTCATCCTATATGTGCTCAAGTTGAGAATATAAATGGGCAGGAGTCAAAGGAACTCTTGCATAGTTTTCCTTGTCAAAAAGAGTATGATATGAGATCTAAAGAAGATTCTAATGTTGAAATTGAGAAGACTTGTAAGCCGCATGTGTTCAATGGGCAACAGAGTTTTGGAGATCTTGTTTATGCAAGGATTGACTGGTGGGATGATGTCACTAAGTTGCTGAATGCGATGCTCACAAATAGGATATTAGATATTCATCAAGTGATGGAGGAGATGATCAAGGGAGACTGTGATGGCAACTCTAACTGGCAGATGGTGGAGTGTGTTTTTGACAAACTAAAATATGAGGAATGTGGGCTAGGAATGAGGTTCTACAACACTCTGATAGAAGTATTTTGGTGGTTAAGTCAGAAACAAAGAGCTGAGCTTTGCATATGTACCTCAAGTCCTCCTTCAGACACAAAAACATCATTTTCCGATGTTGATAGTGTTCGGTATAATGACACCAGTTTGGATGCAGCAAGTAGGACGATTGCAGCGACAAATGCTCTTTCTACCGTAGCGTCAAGGATAGTACCTTCCATCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005911 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009506 GO:0012505 GO:0016740 GO:0016741 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

536

Amino Acids

60.21

Weight (kDa)

4.88

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	52 - 102	2e-10	Putative S-adenosyl-L-methionine-dependent methyltransferase
Methyltransf_29	PF03141	104 - 187	1.6e-16	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1609
Acc36I	ACCTGC	1 cut(s)	318
AccII	CGCG	1 cut(s)	282
AciI	CCGC	2 cut(s)	876, 1160
AcsI	RAATTY	2 cut(s)	140, 800
AcuI	CTGAAG	1 cut(s)	1458
AfaI	GTAC	3 cut(s)	581, 1459, 1596
AfiI	CCNNNNNNNGG	2 cut(s)	175, 215
AflIII	ACRYGT	1 cut(s)	280
AgsI	TTSAA	7 cut(s)	47, 263, 569, 781, 861, 1139, 1171
AjnI	CCWGG	1 cut(s)	760
AleI	CACNNNNGTG	1 cut(s)	762
AloI	GAACNNNNNNTCC	2 cut(s)	628, 660
AluBI	AGCT	7 cut(s)	322, 472, 603, 688, 932, 1442, 1447
AluI	AGCT	7 cut(s)	322, 472, 603, 688, 932, 1442, 1447
Alw21I	GWGCWC	3 cut(s)	241, 538, 1039
Alw26I	GTCTC	1 cut(s)	1299
ApeKI	GCWGC	2 cut(s)	1538, 1556
ApoI	RAATTY	2 cut(s)	140, 800
ArsI	GACNNNNNNTTYG	2 cut(s)	7, 39
Asp700I	GAANNNNTTC	1 cut(s)	198
AspA2I	CCTAGG	1 cut(s)	209
AsuHPI	GGTGA	4 cut(s)	158, 203, 463, 749
AvrII	CCTAGG	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	943
BbsI	GAAGAC	1 cut(s)	1154
Bbv12I	GWGCWC	3 cut(s)	241, 538, 1039
BbvI	GCAGC	2 cut(s)	1550, 1568
BccI	CCATC	6 cut(s)	514, 767, 1279, 1307, 1327, 1610
BciT130I	CCWGG	1 cut(s)	762
BclI	TGATCA	1 cut(s)	1296
BcoDI	GTCTC	1 cut(s)	1299
BfaI	CTAG	3 cut(s)	78, 210, 1379
BfmI	CTRYAG	1 cut(s)	496
BfuAI	ACCTGC	1 cut(s)	318
BglII	AGATCT	3 cut(s)	920, 1115, 1192
BisI	GCNGC	4 cut(s)	877, 1160, 1539, 1557
BlnI	CCTAGG	1 cut(s)	209
BlpI	GCTNAGC	1 cut(s)	1443
BlsI	GCNGC	4 cut(s)	878, 1161, 1540, 1558
Bme1390I	CCNGG	1 cut(s)	762
BmiI	GGNNCC	1 cut(s)	942
BmrFI	CCNGG	1 cut(s)	762
BmsI	GCATC	4 cut(s)	411, 478, 1239, 1525
BpiI	GAAGAC	1 cut(s)	1154
BpmI	CTGGAG	2 cut(s)	363, 609
Bpu1102I	GCTNAGC	1 cut(s)	1443
BpuEI	CTTGAG	2 cut(s)	1023, 1447
BsaBI	GATNNNNATC	1 cut(s)	1275
BsaJI	CCNNGG	2 cut(s)	209, 760
BsaXI	ACNNNNNCTCC	2 cut(s)	1182, 1212
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 215
Bse1I	ACTGG	5 cut(s)	193, 844, 1220, 1331, 1527
Bse3DI	GCAATG	2 cut(s)	70, 944
Bse8I	GATNNNNATC	1 cut(s)	1275
BseBI	CCWGG	1 cut(s)	762
BseDI	CCNNGG	2 cut(s)	209, 760
BseGI	GGATG	4 cut(s)	298, 1024, 1228, 1540
BseJI	GATNNNNATC	1 cut(s)	1275
BseLI	CCNNNNNNNGG	2 cut(s)	175, 215
BseMI	GCAATG	2 cut(s)	70, 944
BseMII	CTCAG	2 cut(s)	924, 1434
BseNI	ACTGG	5 cut(s)	193, 844, 1220, 1331, 1527
BseRI	GAGGAG	2 cut(s)	540, 1304
BseXI	GCAGC	2 cut(s)	1550, 1568
BseYI	CCCAGC	2 cut(s)	441, 888
BsgI	GTGCAG	1 cut(s)	102
Bsh1236I	CGCG	1 cut(s)	282
BsiHKAI	GWGCWC	3 cut(s)	241, 538, 1039
BslFI	GGGAC	1 cut(s)	980
BslI	CCNNNNNNNGG	2 cut(s)	175, 215
BsmAI	GTCTC	1 cut(s)	1299
BsmFI	GGGAC	1 cut(s)	980
BsmI	GAATGC	1 cut(s)	1249
Bsp1286I	GDGCHC	4 cut(s)	241, 538, 943, 1039
Bsp143I	GATC	7 cut(s)	338, 754, 920, 1019, 1115, 1192, 1296
Bsp1720I	GCTNAGC	1 cut(s)	1443
BspACI	CCGC	2 cut(s)	876, 1160
BspCNI	CTCAG	2 cut(s)	925, 1435
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	942
BspMI	ACCTGC	1 cut(s)	318
BspQI	GCTCTTC	1 cut(s)	246
BsrDI	GCAATG	2 cut(s)	70, 944
BsrI	ACTGG	5 cut(s)	193, 844, 1220, 1331, 1527
BssECI	CCNNGG	2 cut(s)	209, 760
BssMI	GATC	7 cut(s)	338, 754, 920, 1019, 1115, 1192, 1296
BssT1I	CCWWGG	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	762
Bst4CI	ACNGT	6 cut(s)	74, 99, 432, 971, 1310, 1579
Bst6I	CTCTTC	2 cut(s)	246, 276
BstDEI	CTNAG	5 cut(s)	587, 599, 933, 1233, 1443
BstEII	GGTNACC	2 cut(s)	164, 305
BstF5I	GGATG	4 cut(s)	298, 1024, 1228, 1540
BstFNI	CGCG	1 cut(s)	282
BstKTI	GATC	7 cut(s)	341, 757, 923, 1022, 1118, 1195, 1299
BstMAI	GTCTC	1 cut(s)	1299
BstMBI	GATC	7 cut(s)	338, 754, 920, 1019, 1115, 1192, 1296
BstMWI	GCNNNNNNNGC	5 cut(s)	319, 615, 938, 980, 1565
BstNI	CCWGG	1 cut(s)	762
BstNSI	RCATGY	2 cut(s)	562, 1166
BstPI	GGTNACC	2 cut(s)	164, 305
BstSCI	CCNGG	1 cut(s)	760
BstSFI	CTRYAG	1 cut(s)	496
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	1550, 1568
BstV2I	GAAGAC	1 cut(s)	1154
BstX2I	RGATCY	3 cut(s)	920, 1115, 1192
BstYI	RGATCY	3 cut(s)	920, 1115, 1192
BtgZI	GCGATG	1 cut(s)	1262
BtsCI	GGATG	4 cut(s)	298, 1024, 1228, 1540
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	5 cut(s)	79, 133, 483, 666, 825
BveI	ACCTGC	1 cut(s)	318
CseI	GACGC	1 cut(s)	1572
Csp6I	GTAC	3 cut(s)	580, 1458, 1595
CviAII	CATG	3 cut(s)	329, 559, 1163
CviQI	GTAC	3 cut(s)	580, 1458, 1595
DdeI	CTNAG	5 cut(s)	587, 599, 933, 1233, 1443
DpnI	GATC	7 cut(s)	340, 756, 922, 1021, 1117, 1194, 1298
DpnII	GATC	7 cut(s)	338, 754, 920, 1019, 1115, 1192, 1296
Eam1104I	CTCTTC	2 cut(s)	246, 276
EarI	CTCTTC	2 cut(s)	246, 276
Eco130I	CCWWGG	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	943
Eco57I	CTGAAG	1 cut(s)	1458
Eco91I	GGTNACC	2 cut(s)	164, 305
EcoO65I	GGTNACC	2 cut(s)	164, 305
EcoRII	CCWGG	1 cut(s)	760
EcoT14I	CCWWGG	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	943
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	3 cut(s)	332, 562, 1166
FalI	AAGNNNNNCTT	4 cut(s)	1061, 1093, 1456, 1488
FaqI	GGGAC	1 cut(s)	980
FatI	CATG	3 cut(s)	328, 558, 1162
FauNDI	CATATG	1 cut(s)	1454
FbaI	TGATCA	1 cut(s)	1296
Fnu4HI	GCNGC	4 cut(s)	877, 1160, 1539, 1557
FokI	GGATG	4 cut(s)	305, 1011, 1235, 1547
FriOI	GRGCYC	1 cut(s)	943
Fsp4HI	GCNGC	4 cut(s)	877, 1160, 1539, 1557
FspBI	CTAG	3 cut(s)	78, 210, 1379
GluI	GCNGC	4 cut(s)	877, 1160, 1539, 1557
GsaI	CCCAGC	2 cut(s)	445, 892
GsuI	CTGGAG	2 cut(s)	363, 609
HgaI	GACGC	1 cut(s)	1572
Hin1II	CATG	3 cut(s)	332, 562, 1166
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	5 cut(s)	16, 777, 857, 1064, 1127
HphI	GGTGA	4 cut(s)	158, 203, 463, 749
Hpy166II	GTNNAC	2 cut(s)	593, 664
Hpy188I	TCNGA	7 cut(s)	421, 635, 684, 1404, 1431, 1477, 1498
Hpy188III	TCNNGA	5 cut(s)	275, 342, 389, 406, 806
Hpy8I	GTNNAC	2 cut(s)	593, 664
HpyAV	CCTTC	5 cut(s)	127, 209, 395, 1482, 1608
HpyCH4III	ACNGT	6 cut(s)	74, 99, 432, 971, 1310, 1579
HpyF10VI	GCNNNNNNNGC	5 cut(s)	319, 615, 938, 980, 1565
HpyF3I	CTNAG	5 cut(s)	587, 599, 933, 1233, 1443
Hsp92II	CATG	3 cut(s)	332, 562, 1166
Ksp22I	TGATCA	1 cut(s)	1296
Kzo9I	GATC	7 cut(s)	338, 754, 920, 1019, 1115, 1192, 1296
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	1 cut(s)	946
Lsp1109I	GCAGC	2 cut(s)	1550, 1568
LweI	GCATC	4 cut(s)	411, 478, 1239, 1525
MaeI	CTAG	3 cut(s)	78, 210, 1379
MaeIII	GTNAC	7 cut(s)	151, 164, 184, 305, 347, 481, 1228
MalI	GATC	7 cut(s)	340, 756, 922, 1021, 1117, 1194, 1298
MboI	GATC	7 cut(s)	338, 754, 920, 1019, 1115, 1192, 1296
MboII	GAAGA	6 cut(s)	149, 233, 263, 764, 1136, 1159
MfeI	CAATTG	1 cut(s)	975
MflI	RGATCY	3 cut(s)	920, 1115, 1192
MhlI	GDGCHC	4 cut(s)	241, 538, 943, 1039
MluI	ACGCGT	1 cut(s)	280
MlyI	GAGTC	2 cut(s)	10, 1073
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	5 cut(s)	228, 324, 612, 900, 1424
MslI	CAYNNNNRTG	3 cut(s)	249, 569, 762
MspA1I	CMGCKG	1 cut(s)	932
MspR9I	CCNGG	1 cut(s)	762
MunI	CAATTG	1 cut(s)	975
Mva1269I	GAATGC	1 cut(s)	1249
MvaI	CCWGG	1 cut(s)	762
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	5 cut(s)	319, 615, 938, 980, 1565
NdeI	CATATG	1 cut(s)	1454
NdeII	GATC	7 cut(s)	338, 754, 920, 1019, 1115, 1192, 1296
NlaIII	CATG	3 cut(s)	332, 562, 1166
NlaIV	GGNNCC	1 cut(s)	942
NmuCI	GTSAC	3 cut(s)	164, 481, 1228
NspI	RCATGY	2 cut(s)	562, 1166
OliI	CACNNNNGTG	1 cut(s)	762
PciSI	GCTCTTC	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	1556
PctI	GAATGC	1 cut(s)	1249
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	3 cut(s)	777, 857, 1127
PkrI	GCNGC	4 cut(s)	878, 1161, 1540, 1558
PleI	GAGTC	2 cut(s)	10, 1072
PpsI	GAGTC	2 cut(s)	10, 1072
PsiI	TTATAA	1 cut(s)	1609
Psp6I	CCWGG	1 cut(s)	760
PspEI	GGTNACC	2 cut(s)	164, 305
PspFI	CCCAGC	2 cut(s)	441, 888
PspGI	CCWGG	1 cut(s)	760
PspN4I	GGNNCC	1 cut(s)	942
PsuI	RGATCY	3 cut(s)	920, 1115, 1192
PvuII	CAGCTG	1 cut(s)	932
RsaI	GTAC	3 cut(s)	581, 1459, 1596
RsaNI	GTAC	3 cut(s)	580, 1458, 1595
RseI	CAYNNNNRTG	3 cut(s)	249, 569, 762
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	5 cut(s)	228, 324, 612, 900, 1424
SatI	GCNGC	4 cut(s)	877, 1160, 1539, 1557
Sau3AI	GATC	7 cut(s)	338, 754, 920, 1019, 1115, 1192, 1296
SchI	GAGTC	2 cut(s)	10, 1073
ScrFI	CCNGG	1 cut(s)	762
SduI	GDGCHC	4 cut(s)	241, 538, 943, 1039
SfaNI	GCATC	4 cut(s)	411, 478, 1239, 1525
SfcI	CTRYAG	1 cut(s)	496
SmiMI	CAYNNNNRTG	3 cut(s)	249, 569, 762
SmlI	CTYRAG	2 cut(s)	1038, 1462
SmoI	CTYRAG	2 cut(s)	1038, 1462
SsiI	CCGC	2 cut(s)	876, 1160
SspMI	CTAG	3 cut(s)	78, 210, 1379
StyD4I	CCNGG	1 cut(s)	760
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	6 cut(s)	74, 99, 432, 971, 1310, 1579
TauI	GCSGC	2 cut(s)	879, 1162
TfiI	GAWTC	3 cut(s)	777, 857, 1127
Tru1I	TTAA	5 cut(s)	228, 324, 612, 900, 1424
Tru9I	TTAA	5 cut(s)	228, 324, 612, 900, 1424
TscAI	CASTG	5 cut(s)	79, 133, 490, 666, 832
TseFI	GTSAC	3 cut(s)	164, 481, 1228
TseI	GCWGC	2 cut(s)	1538, 1556
Tsp45I	GTSAC	3 cut(s)	164, 481, 1228
TspDTI	ATGAA	7 cut(s)	102, 123, 191, 553, 740, 804, 1265
TspRI	CASTG	5 cut(s)	79, 133, 490, 666, 832
XapI	RAATTY	2 cut(s)	140, 800
XceI	RCATGY	2 cut(s)	562, 1166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	658
XmaJI	CCTAGG	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	3 cut(s)	78, 210, 1379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.