Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Reverse (-)

11354594 .. 11356055

Gene Structure 1462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55374

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGTGGACTGGGATGTTGTACATGCCTTGATGTATGAAGAGGGATTCATTATTGAGTTTGTTGAGAAACCAAAAGACAGGAAATTTGAAGCTTTGATAGATGGTGCTACCAATTTGGGAATAGATAACCTGAACACCCATGAGACACCTTACCTTACCACTGTGGATATTTATGTTCTTTACAGGAAAGTGATGTCTCATATGCTTCAAGTAAAGTTTTCAGATTTTGGCACTGCAATTGTTCAGGGTGCAACCTACATAAGCCTGAAAGTTAACGTTTACATGGTTGTTGGCTGTTGTAAAGAAATTGTTCACACTTGGTTGTCAAAATTTCCAGCAATTCTATTTTGCAGTTTAAGCGATGATGCATTTGGAGATATTGCTGGTATGGAATCTGATCTTTTCAGTTCATATGCTGAATCATTTTGTGCAGCTCTAGTTGTTGCTTCCATTTCCTCATTTGTAATCCACCATGAGTTCACCACCATGCTGTACCCCCTCCTTGTTAGTTCTGTGGGCATTCTAGTTTGTGAAATCACAACCTTGTTTGCCACTGATTTCTTTGAGATCAAACCTGTCGAGGACATTGAACTAGCTTTGAAAAAGCAGCTTATCATCTCCACTGTTCTTATAACTATTGGAATTGCAATTGATAGCTGGGTTGCTCTGCCATCATCCTTCACAATTTACAGTATAAGAGTTAAGAACGTTGTAAAGAACTGCCTCATCGAAGATTTCAATTGTGCATTCCAGGAGAACATACTTACTCAGGATAATCCCATTCCAGAAGTCACGAGTGTAAGAGAAGTGAAGACGGCAGGGATCTTTCCTAATGCAATAGAAGAAGTACTTCTACAGATGGTTGGAGACAAGAAGTACTCCTTTGCACGCGATGGAGCTTACAGAATCATAAATGATATTTGGTCGCAATATGTTGATGGTGCCATAGTGACTACAACACAACTGGAATCAATCTCTGAGAACCAAGGGAATGGAGTCGTAATTGAGAAAATGGAGAGCTCCAATCGCCTATTTAAGGAACTGGATGTTACTGAAAGGAACATAATTACTCATCTTTCAAAAGACTCTGAGCTCCCAAGCAAAGTTGAAGACACGGATTGTTATTGGAAATGGTTTGCTAGTAACTTGGCCTCAGGAGGTGCTTCTTCTCTTCTCTTTGTCTACTCTTTGTACTATGCTTGTACCCATTTGGCTCATGATTCTGAGGCTACAAAGAAGGGAGGAGAACGACAATTCAATGGTCTGGTTGATGTCTACAGGAAGACATTGAAATCTGATGGTATTGCAGAGAAGACTGGTTTCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009678 GO:0009705 GO:0009914 GO:0009926 GO:0009941 GO:0010008 GO:0010035 GO:0010248 GO:0010817 GO:0012505 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0022804 GO:0022857 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044433 GO:0044434 GO:0044435 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

442

Amino Acids

49.42

Weight (kDa)

4.81

Isoelectric Point (pI)

30.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	122 - 247	1.4e-14	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	632
AccB1I	GGYRCC	1 cut(s)	941
AccI	GTMKAC	2 cut(s)	1182, 1275
AccII	CGCG	1 cut(s)	891
AclI	AACGTT	2 cut(s)	276, 708
AclWI	GGATC	1 cut(s)	830
AcsI	RAATTY	2 cut(s)	83, 329
AfaI	GTAC	6 cut(s)	21, 494, 849, 878, 1193, 1204
AfiI	CCNNNNNNNGG	1 cut(s)	1036
AgsI	TTSAA	9 cut(s)	89, 209, 590, 601, 739, 1080, 1109, 1258, 1291
AjnI	CCWGG	1 cut(s)	750
AluBI	AGCT	8 cut(s)	92, 434, 596, 610, 657, 899, 1020, 1093
AluI	AGCT	8 cut(s)	92, 434, 596, 610, 657, 899, 1020, 1093
Alw21I	GWGCWC	2 cut(s)	1022, 1095
Alw26I	GTCTC	3 cut(s)	137, 201, 861
AlwI	GGATC	1 cut(s)	830
AoxI	GGCC	1 cut(s)	1149
ApeKI	GCWGC	2 cut(s)	431, 607
ApoI	RAATTY	2 cut(s)	83, 329
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
Asp700I	GAANNNNTTC	2 cut(s)	309, 849
AsuHPI	GGTGA	1 cut(s)	472
AxyI	CCTNAGG	1 cut(s)	1153
BanI	GGYRCC	1 cut(s)	941
BanII	GRGCYC	2 cut(s)	1022, 1095
BarI	GAAGNNNNNNTAC	2 cut(s)	837, 869
BauI	CACGAG	1 cut(s)	793
BbsI	GAAGAC	4 cut(s)	818, 1116, 1289, 1319
Bbv12I	GWGCWC	2 cut(s)	1022, 1095
BbvI	GCAGC	2 cut(s)	443, 619
BccI	CCATC	6 cut(s)	95, 679, 853, 887, 932, 1292
BceAI	ACGGC	1 cut(s)	831
BciT130I	CCWGG	1 cut(s)	752
BcoDI	GTCTC	3 cut(s)	137, 201, 861
BfaI	CTAG	4 cut(s)	437, 524, 593, 1140
BfmI	CTRYAG	2 cut(s)	854, 1276
BisI	GCNGC	2 cut(s)	432, 608
BlsI	GCNGC	2 cut(s)	433, 609
BmcAI	AGTACT	2 cut(s)	849, 878
Bme1390I	CCNGG	1 cut(s)	752
BmiI	GGNNCC	1 cut(s)	943
BmrFI	CCNGG	1 cut(s)	752
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	355
BmuI	ACTGGG	1 cut(s)	19
BpiI	GAAGAC	4 cut(s)	818, 1116, 1289, 1319
BsaJI	CCNNGG	1 cut(s)	985
Bsc4I	CCNNNNNNNGG	1 cut(s)	1036
Bse1I	ACTGG	4 cut(s)	14, 969, 1047, 1321
Bse21I	CCTNAGG	1 cut(s)	1153
BseBI	CCWGG	1 cut(s)	752
BseDI	CCNNGG	1 cut(s)	985
BseGI	GGATG	3 cut(s)	19, 674, 1051
BseLI	CCNNNNNNNGG	1 cut(s)	1036
BseMII	CTCAG	5 cut(s)	782, 969, 1080, 1167, 1215
BseNI	ACTGG	4 cut(s)	14, 969, 1047, 1321
BseRI	GAGGAG	1 cut(s)	1257
BseXI	GCAGC	2 cut(s)	443, 619
BseYI	CCCAGC	1 cut(s)	657
BsgI	GTGCAG	1 cut(s)	450
Bsh1236I	CGCG	1 cut(s)	891
BshFI	GGCC	1 cut(s)	1151
BshNI	GGYRCC	1 cut(s)	941
BsiHKAI	GWGCWC	2 cut(s)	1022, 1095
BslI	CCNNNNNNNGG	1 cut(s)	1036
BsmAI	GTCTC	3 cut(s)	137, 201, 861
BsmI	GAATGC	2 cut(s)	519, 746
BsnI	GGCC	1 cut(s)	1151
Bsp1286I	GDGCHC	2 cut(s)	1022, 1095
Bsp1407I	TGTACA	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	397, 567, 822
BspANI	GGCC	1 cut(s)	1151
BspCNI	CTCAG	5 cut(s)	781, 970, 1081, 1166, 1216
BspFNI	CGCG	1 cut(s)	891
BspHI	TCATGA	1 cut(s)	1216
BspLI	GGNNCC	1 cut(s)	943
BspPI	GGATC	1 cut(s)	830
BspT107I	GGYRCC	1 cut(s)	941
BsrGI	TGTACA	1 cut(s)	19
BsrI	ACTGG	4 cut(s)	14, 969, 1047, 1321
BssECI	CCNNGG	1 cut(s)	985
BssMI	GATC	3 cut(s)	397, 567, 822
BssSI	CACGAG	1 cut(s)	793
BssT1I	CCWWGG	1 cut(s)	985
Bst2BI	CACGAG	1 cut(s)	793
Bst2UI	CCWGG	1 cut(s)	752
Bst4CI	ACNGT	3 cut(s)	163, 625, 692
Bst6I	CTCTTC	2 cut(s)	33, 1176
BstAUI	TGTACA	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	889
BstDEI	CTNAG	5 cut(s)	768, 978, 1089, 1153, 1224
BstENI	CCTNNNNNAGG	1 cut(s)	1034
BstF5I	GGATG	3 cut(s)	19, 674, 1051
BstFNI	CGCG	1 cut(s)	891
BstKTI	GATC	3 cut(s)	400, 570, 825
BstMAI	GTCTC	3 cut(s)	137, 201, 861
BstMBI	GATC	3 cut(s)	397, 567, 822
BstMWI	GCNNNNNNNGC	2 cut(s)	357, 1026
BstNI	CCWGG	1 cut(s)	752
BstNSI	RCATGY	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	750
BstSFI	CTRYAG	2 cut(s)	854, 1276
BstUI	CGCG	1 cut(s)	891
BstV1I	GCAGC	2 cut(s)	443, 619
BstV2I	GAAGAC	4 cut(s)	818, 1116, 1289, 1319
BstX2I	RGATCY	1 cut(s)	822
BstXI	CCANNNNNNTGG	1 cut(s)	992
BstYI	RGATCY	1 cut(s)	822
Bsu36I	CCTNAGG	1 cut(s)	1153
BsuRI	GGCC	1 cut(s)	1151
BtgZI	GCGATG	2 cut(s)	375, 906
BtsCI	GGATG	3 cut(s)	19, 674, 1051
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	4 cut(s)	159, 231, 552, 621
Cac8I	GCNNGC	1 cut(s)	889
CciI	TCATGA	1 cut(s)	1216
Csp6I	GTAC	6 cut(s)	20, 493, 848, 877, 1192, 1203
CviAII	CATG	6 cut(s)	23, 140, 283, 473, 487, 1217
CviQI	GTAC	6 cut(s)	20, 493, 848, 877, 1192, 1203
DdeI	CTNAG	5 cut(s)	768, 978, 1089, 1153, 1224
DpnI	GATC	3 cut(s)	399, 569, 824
DpnII	GATC	3 cut(s)	397, 567, 822
Eam1104I	CTCTTC	2 cut(s)	33, 1176
EarI	CTCTTC	2 cut(s)	33, 1176
Ecl136II	GAGCTC	2 cut(s)	1020, 1093
Eco130I	CCWWGG	1 cut(s)	985
Eco24I	GRGCYC	2 cut(s)	1022, 1095
Eco53kI	GAGCTC	2 cut(s)	1020, 1093
Eco81I	CCTNAGG	1 cut(s)	1153
EcoICRI	GAGCTC	2 cut(s)	1020, 1093
EcoNI	CCTNNNNNAGG	1 cut(s)	1034
EcoRII	CCWGG	1 cut(s)	750
EcoT14I	CCWWGG	1 cut(s)	985
EcoT22I	ATGCAT	1 cut(s)	370
EcoT38I	GRGCYC	2 cut(s)	1022, 1095
ErhI	CCWWGG	1 cut(s)	985
FaeI	CATG	6 cut(s)	26, 143, 286, 476, 490, 1220
FalI	AAGNNNNNCTT	4 cut(s)	834, 866, 866, 898
FatI	CATG	6 cut(s)	22, 139, 282, 472, 486, 1216
FauNDI	CATATG	2 cut(s)	201, 412
FblI	GTMKAC	2 cut(s)	1182, 1275
Fnu4HI	GCNGC	2 cut(s)	432, 608
FokI	GGATG	3 cut(s)	26, 661, 1058
FriOI	GRGCYC	2 cut(s)	1022, 1095
Fsp4HI	GCNGC	2 cut(s)	432, 608
FspBI	CTAG	4 cut(s)	437, 524, 593, 1140
GluI	GCNGC	2 cut(s)	432, 608
GsaI	CCCAGC	1 cut(s)	661
HaeIII	GGCC	1 cut(s)	1151
Hin1II	CATG	6 cut(s)	26, 143, 286, 476, 490, 1220
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	8 cut(s)	45, 392, 419, 906, 968, 996, 1085, 1220
HpaI	GTTAAC	1 cut(s)	274
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	7 cut(s)	7, 274, 280, 313, 480, 1183, 1276
Hpy188I	TCNGA	6 cut(s)	223, 397, 979, 1090, 1225, 1297
Hpy188III	TCNNGA	6 cut(s)	770, 785, 793, 1155, 1217, 1326
Hpy8I	GTNNAC	7 cut(s)	7, 274, 280, 313, 480, 1183, 1276
HpyAV	CCTTC	2 cut(s)	688, 1231
HpyCH4III	ACNGT	3 cut(s)	163, 625, 692
HpyCH4IV	ACGT	2 cut(s)	276, 708
HpyF10VI	GCNNNNNNNGC	2 cut(s)	357, 1026
HpyF3I	CTNAG	5 cut(s)	768, 978, 1089, 1153, 1224
HpySE526I	ACGT	2 cut(s)	276, 708
Hsp92II	CATG	6 cut(s)	26, 143, 286, 476, 490, 1220
KspAI	GTTAAC	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	397, 567, 822
LmnI	GCTCC	3 cut(s)	896, 1025, 1098
Lsp1109I	GCAGC	2 cut(s)	443, 619
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	4 cut(s)	437, 524, 593, 1140
MaeII	ACGT	2 cut(s)	276, 708
MaeIII	GTNAC	4 cut(s)	790, 949, 1048, 1142
MalI	GATC	3 cut(s)	399, 569, 824
MboI	GATC	3 cut(s)	397, 567, 822
MboII	GAAGA	9 cut(s)	50, 743, 823, 854, 1121, 1158, 1163, 1294, 1324
MfeI	CAATTG	3 cut(s)	237, 648, 739
MflI	RGATCY	1 cut(s)	822
MhlI	GDGCHC	2 cut(s)	1022, 1095
MlyI	GAGTC	2 cut(s)	1005, 1079
MmeI	TCCRAC	1 cut(s)	844
MnlI	CCTC	9 cut(s)	34, 466, 509, 574, 734, 1151, 1162, 1219, 1235
Mph1103I	ATGCAT	1 cut(s)	370
MroXI	GAANNNNTTC	2 cut(s)	309, 849
MseI	TTAA	4 cut(s)	273, 356, 702, 1035
MslI	CAYNNNNRTG	1 cut(s)	485
MspR9I	CCNGG	1 cut(s)	752
MunI	CAATTG	3 cut(s)	237, 648, 739
Mva1269I	GAATGC	2 cut(s)	519, 746
MvaI	CCWGG	1 cut(s)	752
MvnI	CGCG	1 cut(s)	891
MwoI	GCNNNNNNNGC	2 cut(s)	357, 1026
NdeI	CATATG	2 cut(s)	201, 412
NdeII	GATC	3 cut(s)	397, 567, 822
NlaIII	CATG	6 cut(s)	26, 143, 286, 476, 490, 1220
NlaIV	GGNNCC	1 cut(s)	943
NmuCI	GTSAC	2 cut(s)	790, 949
NsiI	ATGCAT	1 cut(s)	370
NspI	RCATGY	1 cut(s)	26
PagI	TCATGA	1 cut(s)	1216
PctI	GAATGC	2 cut(s)	519, 746
PdmI	GAANNNNTTC	2 cut(s)	309, 849
PfeI	GAWTC	6 cut(s)	45, 392, 419, 906, 968, 1220
PfoI	TCCNGGA	1 cut(s)	750
PkrI	GCNGC	2 cut(s)	433, 609
PleI	GAGTC	2 cut(s)	1004, 1079
PpsI	GAGTC	2 cut(s)	1004, 1079
PsiI	TTATAA	1 cut(s)	632
Psp124BI	GAGCTC	2 cut(s)	1022, 1095
Psp1406I	AACGTT	2 cut(s)	276, 708
Psp6I	CCWGG	1 cut(s)	750
PspFI	CCCAGC	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	750
PspN4I	GGNNCC	1 cut(s)	943
PsuI	RGATCY	1 cut(s)	822
RsaI	GTAC	6 cut(s)	21, 494, 849, 878, 1193, 1204
RsaNI	GTAC	6 cut(s)	20, 493, 848, 877, 1192, 1203
RseI	CAYNNNNRTG	1 cut(s)	485
SacI	GAGCTC	2 cut(s)	1022, 1095
SaqAI	TTAA	4 cut(s)	273, 356, 702, 1035
SatI	GCNGC	2 cut(s)	432, 608
Sau3AI	GATC	3 cut(s)	397, 567, 822
ScaI	AGTACT	2 cut(s)	849, 878
SchI	GAGTC	2 cut(s)	1005, 1079
ScrFI	CCNGG	1 cut(s)	752
SduI	GDGCHC	2 cut(s)	1022, 1095
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	2 cut(s)	854, 1276
SmiMI	CAYNNNNRTG	1 cut(s)	485
SspMI	CTAG	4 cut(s)	437, 524, 593, 1140
SstI	GAGCTC	2 cut(s)	1022, 1095
StyD4I	CCNGG	1 cut(s)	750
StyI	CCWWGG	1 cut(s)	985
TaaI	ACNGT	3 cut(s)	163, 625, 692
TaiI	ACGT	2 cut(s)	279, 711
TaqI	TCGA	2 cut(s)	579, 729
TatI	WGTACW	4 cut(s)	19, 847, 876, 1191
TfiI	GAWTC	6 cut(s)	45, 392, 419, 906, 968, 1220
Tru1I	TTAA	4 cut(s)	273, 356, 702, 1035
Tru9I	TTAA	4 cut(s)	273, 356, 702, 1035
TscAI	CASTG	4 cut(s)	166, 238, 559, 628
TseFI	GTSAC	2 cut(s)	790, 949
TseI	GCWGC	2 cut(s)	431, 607
Tsp45I	GTSAC	2 cut(s)	790, 949
TspDTI	ATGAA	3 cut(s)	37, 51, 399
TspGWI	ACGGA	1 cut(s)	1130
TspRI	CASTG	4 cut(s)	166, 238, 559, 628
XagI	CCTNNNNNAGG	1 cut(s)	1034
XapI	RAATTY	2 cut(s)	83, 329
XceI	RCATGY	1 cut(s)	26
XmiI	GTMKAC	2 cut(s)	1182, 1275
XmnI	GAANNNNTTC	2 cut(s)	309, 849
XspI	CTAG	4 cut(s)	437, 524, 593, 1140
ZrmI	AGTACT	2 cut(s)	849, 878
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.