Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Forward (+)

54739331 .. 54742666

Gene Structure 3336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58806

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2685 bp

ATGTCCAGATCTCAAACCTCTTTCTCTGAATCGCAAGTCGTTTCGGACATAGAGTCACCATGGCGGCAAAGTAATGACCTAGATCAGATAGATCCCGCTAAACCCATATTGAATGTGGCACCGTTGAATAGCCTGCCATATATTCTCCCAACCACAAAGCCATCAGCAGCCAGAAAGTCCAGTGAACAAGAAAAAGTGAAGCCAGCTATGGTGCTTTTACCTTTACTCGCAACAAGAGAAGAGCGAGATAAGATTTTGGAAACCACCAAAGGGGTTGTATTGACTGGAGTTACTGCAACGGGACAGGTGGGACCCATAATTGTAACGGAACCCACAGACCTCTCTGTTTCCACACAAGCTTCAGCTGGTTCATCTCTCCCTCCATCAATTGAGGCTACAGCGTTTGTTGGAGATATACCGCTGGACATCCCAGCTGTGGCAGTGAATTTGGCTGGTATCAATGAGTCTGCACATGATGTAGACCCGCATATCGGTCCTCCAGTAGTGGAAGCACTGTCAAGGACAAAATTCATAGGGCTTTCCGAGGGTTTTAGCTTACTAAATGGGTTGCCACATTCATTAACTTTTCAGATTGTTAATGTGATTGGTACTGGGGAGAATGTGATGGGGTATTGGACACCTGAAAATGAATTTGTGAGAAACTTGAATTCCAAAACCGCAATGAACAGCTCATTCTCTACTTCCAATAGTAGTCTTGGGTATATTATATGGCCTGGAGACTCCACCTCTACTCCAAAAGGTTGGCAGATTCCTACAAGTGGGACGAAGTTGAAGATTTTACTACCAGTTCAGAGTGGGTTCAAGGAATTTACGAACGTGGCGGATGATTCTAACCTTGAGCAGCAGATTATCATGAAAGAGGAATTTTGCAATGAACAGTTGGCTCTGGTCTATCGATTTTGTAGGTCAGGTCATTTTGATAAGGCAAAAGAGGTGTTGGTGCAAATATTAGAGAGGTGGAAATCAAAAGTTATGGCTAAAATTGCAGGGGAGGAGAATACTAAGAAACCAAATTTTGTTCTTAAGGAATGCCTCAAGCTCGACAATAAGATGGCGGTCTGCTCCATTGACACCCAATCTCGATCGCATCTATTGTCGTGGTTCATTCTTTTCTTTGAATTGGGTAATTGTGAGACATCGAAGGAAACACCACCCTATTGCAGAAAAGCATCGGCTGAAATTAGTCTAGTGACCCAAAGCTTAGTCTCTCAGGTATTCACTGCCATCATTTCTAGTCCTCAATACTTTCGAGCATCTTTTTATGGGGTATTGTATGACTTGATTAAGCTCTATGCTGTGATTTATATTGCTTTCATCGATAATGCTGGAATTTTGCTCCCTGATGACTCATTTGGGATAATGATAAGAAATGGCAAGTTATTTTATGAATATATGAATGTGCTTGCCAAAATGCTTTTAAGGGGTGTTAGTAAGGAGCGGCTGATGAGTTCAAATGTTAGTATAATGGATACAATTGTTGCTGCATTATGTGGAGAGAGCATCACGATGGATGGCATTGGAAACTCATTTTTGATTTGGTTGCTTGCAATTCATAGTACAAAGTTTAAGAGAGAAGCTGCAAGTATATTACATATCTGGGCATATCATATTAATGATCAAATGGTGGACTGGAATGTTGTACATGCCTTGATGTATGAAGAGGGATTCATGATTGAGTTTGTTGAGAAACCAAAAGACAGGAAATTTGAAGCTTTGATAGATGGTGCTACCAATTTGGGAATTGATGACCTGAACACCCAAGAGACACCTTACCTTACCACTGTGGATATTTATGTTCTTTACAGGAAAGTGATGTCTGATATGCTTCAAGTAAAGTTTTCAGATTTTGGCACTGCAGTTGTTCAGGGTGCAACCTACATAAGCCTGAAAGTTAAAGTTTACATGGTTGTTGGCTATTGTAAAGAAATTGTTCACACTTGGTTGTCAAAATTTCCAGCAGTTCAATTTTGCAGTTTAAGCGATGATGCATTTGGAGATATTGCTGGTATGGAATCTGATCTTTTCAGTTCATATGCTGAATCATTTTGTGCTGCTCTAGTTGTTGCTTCCATTTCCTCATTTGTAATCCACCATGAGTTCACCACCATGCTGTACCCCCTCCTTGTTAGTTCTATGGGCATAAATGATGTTTGGTCGCAATATGTTGATGGCGCCATAGTGACTACAGCACATCTGGAATCAATCTCTGAGAGCCAAGGGAATGGAGTCGTAATTGAGAAAATGGAGAGCTCCAATCTCCTATTTAAGGAACTGGATGTTACTGACAGGAACATAATTACTCATCTTTCAAAAGACTCTGAGCTCCCACGCAAAGTTGAAGACACGGATTGTTATTGGAAATGGTTTGCTAGTAACTTGGCCTCAGGAGGTGCTTCTTCTCTTCTCTTTGTCTACTCCTTGTACTATGCTTGTACCCATCTGGCTCGTGATTCTAAGGCTACAAAGAAGGGAGGAGAACGACAATTCAATGGTCTGGTTGATGTCTATAGGAAGACATTGAAATCTGATGGTATTGCAGGTCTATATCATGGATCCATTATATCATGTGTTGAAGCAATTATGGTGATTAAAGCAATGCCAGAGAGAAGACTGGTTTCTCCTGAAGTCCTAGGGGTTCACTTTCTTTTTCTTACATGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

894

Amino Acids

99.04

Weight (kDa)

5.39

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	669 - 723	5.9e-07	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2549
AccB1I	GGYRCC	2 cut(s)	118, 2192
AccBSI	CCGCTC	1 cut(s)	1459
AccI	GTMKAC	2 cut(s)	480, 2433
AciI	CCGC	8 cut(s)	64, 96, 419, 485, 678, 842, 1076, 1459
AclWI	GGATC	3 cut(s)	86, 2568, 2581
AcuI	CTGAAG	2 cut(s)	345, 2664
AcyI	GRCGYC	1 cut(s)	2193
AfaI	GTAC	6 cut(s)	610, 1579, 1662, 2135, 2444, 2455
AfiI	CCNNNNNNNGG	5 cut(s)	270, 436, 491, 779, 2287
AflII	CTTAAG	1 cut(s)	1043
AflIII	ACRYGT	1 cut(s)	2675
AhdI	GACNNNNNGTC	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	733
Alw21I	GWGCWC	2 cut(s)	2273, 2346
Alw26I	GTCTC	4 cut(s)	732, 1148, 1231, 1778
AlwI	GGATC	3 cut(s)	86, 2568, 2581
AoxI	GGCC	2 cut(s)	731, 2400
ApeKI	GCWGC	5 cut(s)	167, 862, 1502, 1598, 2072
ArsI	GACNNNNNNTTYG	2 cut(s)	1709, 1741
AseI	ATTAAT	1 cut(s)	1632
Asp700I	GAANNNNTTC	1 cut(s)	1950
AspA2I	CCTAGG	1 cut(s)	2650
AspLEI	GCGC	1 cut(s)	2195
AspS9I	GGNCC	2 cut(s)	311, 494
AsuHPI	GGTGA	3 cut(s)	48, 2113, 2617
AvaII	GGWCC	2 cut(s)	311, 494
AvrII	CCTAGG	1 cut(s)	2650
AxyI	CCTNAGG	1 cut(s)	2404
BaeI	ACNNNNGTAYC	2 cut(s)	1482, 1515
BamHI	GGATCC	1 cut(s)	2573
BanI	GGYRCC	2 cut(s)	118, 2192
BanII	GRGCYC	2 cut(s)	2273, 2346
BauI	CACGAG	1 cut(s)	2466
BbsI	GAAGAC	3 cut(s)	2367, 2540, 2635
Bbv12I	GWGCWC	2 cut(s)	2273, 2346
BbvI	GCAGC	5 cut(s)	179, 874, 1489, 1585, 2059
BciT130I	CCWGG	1 cut(s)	735
BciVI	GTATCC	1 cut(s)	1483
BclI	TGATCA	1 cut(s)	1636
BcoDI	GTCTC	4 cut(s)	732, 1148, 1231, 1778
BfaI	CTAG	6 cut(s)	80, 1208, 1254, 2078, 2391, 2651
BfmI	CTRYAG	4 cut(s)	396, 1875, 2205, 2527
BfoI	RGCGCY	1 cut(s)	2196
BfrI	CTTAAG	1 cut(s)	1043
BfuAI	ACCTGC	1 cut(s)	2549
BfuI	GTATCC	1 cut(s)	1483
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	7 cut(s)	65, 168, 863, 1460, 1503, 1599, 2073
BlnI	CCTAGG	1 cut(s)	2650
BlsI	GCNGC	7 cut(s)	66, 169, 864, 1461, 1504, 1600, 2074
Bme1390I	CCNGG	1 cut(s)	735
Bme18I	GGWCC	2 cut(s)	311, 494
BmeRI	GACNNNNNGTC	1 cut(s)	52
BmgT120I	GGNCC	2 cut(s)	311, 494
BmiI	GGNNCC	6 cut(s)	120, 312, 313, 330, 2194, 2575
BmrFI	CCNGG	1 cut(s)	735
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	5 cut(s)	1117, 1199, 1283, 1530, 1996
BmuI	ACTGGG	1 cut(s)	621
BpiI	GAAGAC	3 cut(s)	2367, 2540, 2635
BpmI	CTGGAG	3 cut(s)	306, 483, 756
BpuEI	CTTGAG	2 cut(s)	878, 1040
Bsa29I	ATCGAT	2 cut(s)	916, 1338
BsaHI	GRCGYC	1 cut(s)	2193
BsaJI	CCNNGG	4 cut(s)	59, 543, 2236, 2650
BsaXI	ACNNNNNCTCC	2 cut(s)	736, 766
Bsc4I	CCNNNNNNNGG	5 cut(s)	270, 436, 491, 779, 2287
Bse1I	ACTGG	8 cut(s)	180, 289, 500, 616, 806, 1655, 2298, 2637
Bse21I	CCTNAGG	1 cut(s)	2404
Bse3DI	GCAATG	3 cut(s)	687, 898, 2622
BseBI	CCWGG	1 cut(s)	735
BseCI	ATCGAT	2 cut(s)	916, 1338
BseDI	CCNNGG	4 cut(s)	59, 543, 2236, 2650
BseGI	GGATG	4 cut(s)	426, 850, 1537, 2302
BseLI	CCNNNNNNNGG	5 cut(s)	270, 436, 491, 779, 2287
BseMI	GCAATG	3 cut(s)	687, 898, 2622
BseMII	CTCAG	4 cut(s)	1244, 2220, 2331, 2418
BseNI	ACTGG	8 cut(s)	180, 289, 500, 616, 806, 1655, 2298, 2637
BseRI	GAGGAG	2 cut(s)	1028, 2508
BseXI	GCAGC	5 cut(s)	179, 874, 1489, 1585, 2059
BseYI	CCCAGC	1 cut(s)	430
BsgI	GTGCAG	1 cut(s)	453
Bsh1285I	CGRYCG	1 cut(s)	1106
BshFI	GGCC	2 cut(s)	733, 2402
BshNI	GGYRCC	2 cut(s)	118, 2192
BshVI	ATCGAT	2 cut(s)	916, 1338
BsiEI	CGRYCG	1 cut(s)	1106
BsiHKAI	GWGCWC	2 cut(s)	2273, 2346
BslFI	GGGAC	3 cut(s)	315, 324, 796
BslI	CCNNNNNNNGG	5 cut(s)	270, 436, 491, 779, 2287
BsmAI	GTCTC	4 cut(s)	732, 1148, 1231, 1778
BsmFI	GGGAC	3 cut(s)	315, 324, 796
BsmI	GAATGC	1 cut(s)	1055
BsnI	GGCC	2 cut(s)	733, 2402
Bsp1286I	GDGCHC	2 cut(s)	2273, 2346
Bsp1407I	TGTACA	1 cut(s)	1660
Bsp143I	GATC	7 cut(s)	8, 82, 91, 1103, 1636, 2038, 2573
Bsp19I	CCATGG	1 cut(s)	59
BspACI	CCGC	8 cut(s)	64, 96, 419, 485, 678, 842, 1076, 1459
BspANI	GGCC	2 cut(s)	733, 2402
BspCNI	CTCAG	4 cut(s)	1243, 2221, 2332, 2417
BspDI	ATCGAT	2 cut(s)	916, 1338
BspHI	TCATGA	2 cut(s)	873, 1689
BspLI	GGNNCC	6 cut(s)	120, 312, 313, 330, 2194, 2575
BspMAI	CTGCAG	1 cut(s)	1879
BspMI	ACCTGC	1 cut(s)	2549
BspPI	GGATC	3 cut(s)	86, 2568, 2581
BspQI	GCTCTTC	1 cut(s)	234
BspT107I	GGYRCC	2 cut(s)	118, 2192
BspTI	CTTAAG	1 cut(s)	1043
BsrBI	CCGCTC	1 cut(s)	1459
BsrDI	GCAATG	3 cut(s)	687, 898, 2622
BsrGI	TGTACA	1 cut(s)	1660
BsrI	ACTGG	8 cut(s)	180, 289, 500, 616, 806, 1655, 2298, 2637
BssECI	CCNNGG	4 cut(s)	59, 543, 2236, 2650
BssMI	GATC	7 cut(s)	8, 82, 91, 1103, 1636, 2038, 2573
BssNI	GRCGYC	1 cut(s)	2193
BssSI	CACGAG	1 cut(s)	2466
BssT1I	CCWWGG	3 cut(s)	59, 2236, 2650
Bst2BI	CACGAG	1 cut(s)	2466
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	4 cut(s)	123, 516, 900, 1804
Bst6I	CTCTTC	3 cut(s)	234, 1674, 2427
BstACI	GRCGYC	1 cut(s)	2193
BstAFI	CTTAAG	1 cut(s)	1043
BstAUI	TGTACA	1 cut(s)	1660
BstC8I	GCNNGC	4 cut(s)	134, 204, 1425, 1566
BstDEI	CTNAG	7 cut(s)	1023, 1222, 1230, 2229, 2340, 2404, 2475
BstDSI	CCRYGG	1 cut(s)	59
BstENI	CCTNNNNNAGG	1 cut(s)	2285
BstF5I	GGATG	4 cut(s)	426, 850, 1537, 2302
BstH2I	RGCGCY	1 cut(s)	2196
BstHHI	GCGC	1 cut(s)	2195
BstKTI	GATC	7 cut(s)	11, 85, 94, 1106, 1639, 2041, 2576
BstMAI	GTCTC	4 cut(s)	732, 1148, 1231, 1778
BstMBI	GATC	7 cut(s)	8, 82, 91, 1103, 1636, 2038, 2573
BstMCI	CGRYCG	1 cut(s)	1106
BstMWI	GCNNNNNNNGC	2 cut(s)	1004, 1998
BstNI	CCWGG	1 cut(s)	735
BstNSI	RCATGY	2 cut(s)	1667, 2679
BstSCI	CCNGG	1 cut(s)	733
BstSFI	CTRYAG	4 cut(s)	396, 1875, 2205, 2527
BstV1I	GCAGC	5 cut(s)	179, 874, 1489, 1585, 2059
BstV2I	GAAGAC	3 cut(s)	2367, 2540, 2635
BstX2I	RGATCY	3 cut(s)	8, 91, 2573
BstXI	CCANNNNNNTGG	2 cut(s)	762, 2243
BstYI	RGATCY	3 cut(s)	8, 91, 2573
Bsu15I	ATCGAT	2 cut(s)	916, 1338
Bsu36I	CCTNAGG	1 cut(s)	2404
BsuI	GTATCC	1 cut(s)	1483
BsuRI	GGCC	2 cut(s)	733, 2402
BsuTUI	ATCGAT	2 cut(s)	916, 1338
BtgI	CCRYGG	1 cut(s)	59
BtgZI	GCGATG	1 cut(s)	2016
BtsCI	GGATG	4 cut(s)	426, 850, 1537, 2302
BtsI	GCAGTG	3 cut(s)	447, 1239, 1872
BtsIMutI	CAGTG	6 cut(s)	187, 447, 512, 1239, 1800, 1872
BveI	ACCTGC	1 cut(s)	2549
Cac8I	GCNNGC	4 cut(s)	134, 204, 1425, 1566
CciI	TCATGA	2 cut(s)	873, 1689
CfoI	GCGC	1 cut(s)	2195
Cfr13I	GGNCC	2 cut(s)	311, 494
ClaI	ATCGAT	2 cut(s)	916, 1338
Csp6I	GTAC	6 cut(s)	609, 1578, 1661, 2134, 2443, 2454
CviQI	GTAC	6 cut(s)	609, 1578, 1661, 2134, 2443, 2454
DdeI	CTNAG	7 cut(s)	1023, 1222, 1230, 2229, 2340, 2404, 2475
DinI	GGCGCC	1 cut(s)	2194
DpnI	GATC	7 cut(s)	10, 84, 93, 1105, 1638, 2040, 2575
DpnII	GATC	7 cut(s)	8, 82, 91, 1103, 1636, 2038, 2573
DriI	GACNNNNNGTC	1 cut(s)	52
Eam1104I	CTCTTC	3 cut(s)	234, 1674, 2427
Eam1105I	GACNNNNNGTC	1 cut(s)	52
EarI	CTCTTC	3 cut(s)	234, 1674, 2427
EciI	GGCGGA	1 cut(s)	857
Ecl136II	GAGCTC	2 cut(s)	2271, 2344
Eco130I	CCWWGG	3 cut(s)	59, 2236, 2650
Eco24I	GRGCYC	2 cut(s)	2273, 2346
Eco47I	GGWCC	2 cut(s)	311, 494
Eco53kI	GAGCTC	2 cut(s)	2271, 2344
Eco57I	CTGAAG	2 cut(s)	345, 2664
Eco81I	CCTNAGG	1 cut(s)	2404
EcoICRI	GAGCTC	2 cut(s)	2271, 2344
EcoNI	CCTNNNNNAGG	1 cut(s)	2285
EcoO109I	RGGNCCY	1 cut(s)	311
EcoRI	GAATTC	1 cut(s)	667
EcoRII	CCWGG	1 cut(s)	733
EcoT14I	CCWWGG	3 cut(s)	59, 2236, 2650
EcoT22I	ATGCAT	1 cut(s)	2011
EcoT38I	GRGCYC	2 cut(s)	2273, 2346
EgeI	GGCGCC	1 cut(s)	2194
EheI	GGCGCC	1 cut(s)	2194
ErhI	CCWWGG	3 cut(s)	59, 2236, 2650
FaqI	GGGAC	3 cut(s)	315, 324, 796
FauI	CCCGC	2 cut(s)	103, 492
FauNDI	CATATG	1 cut(s)	2053
FbaI	TGATCA	1 cut(s)	1636
FblI	GTMKAC	2 cut(s)	480, 2433
Fnu4HI	GCNGC	7 cut(s)	65, 168, 863, 1460, 1503, 1599, 2073
FokI	GGATG	4 cut(s)	413, 857, 1544, 2309
FriOI	GRGCYC	2 cut(s)	2273, 2346
Fsp4HI	GCNGC	7 cut(s)	65, 168, 863, 1460, 1503, 1599, 2073
FspBI	CTAG	6 cut(s)	80, 1208, 1254, 2078, 2391, 2651
GlaI	GCGC	1 cut(s)	2194
GluI	GCNGC	7 cut(s)	65, 168, 863, 1460, 1503, 1599, 2073
GsaI	CCCAGC	1 cut(s)	434
GsuI	CTGGAG	3 cut(s)	306, 483, 756
HaeII	RGCGCY	1 cut(s)	2196
HaeIII	GGCC	2 cut(s)	733, 2402
HhaI	GCGC	1 cut(s)	2195
Hin1I	GRCGYC	1 cut(s)	2193
Hin6I	GCGC	1 cut(s)	2193
HinP1I	GCGC	1 cut(s)	2193
HindIII	AAGCTT	3 cut(s)	357, 1219, 1731
HphI	GGTGA	3 cut(s)	48, 2113, 2617
Hpy166II	GTNNAC	8 cut(s)	185, 481, 1648, 1921, 1954, 2121, 2434, 2659
Hpy188III	TCNNGA	9 cut(s)	6, 874, 1101, 1525, 1690, 2216, 2406, 2468, 2642
Hpy8I	GTNNAC	8 cut(s)	185, 481, 1648, 1921, 1954, 2121, 2434, 2659
HpyAV	CCTTC	2 cut(s)	1156, 2482
HpyCH4III	ACNGT	4 cut(s)	123, 516, 900, 1804
HpyCH4IV	ACGT	1 cut(s)	837
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1004, 1998
HpyF3I	CTNAG	7 cut(s)	1023, 1222, 1230, 2229, 2340, 2404, 2475
HpySE526I	ACGT	1 cut(s)	837
Hsp92I	GRCGYC	1 cut(s)	2193
HspAI	GCGC	1 cut(s)	2193
KasI	GGCGCC	1 cut(s)	2192
KflI	GGGWCCC	1 cut(s)	311
Ksp22I	TGATCA	1 cut(s)	1636
Kzo9I	GATC	7 cut(s)	8, 82, 91, 1103, 1636, 2038, 2573
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	5 cut(s)	1088, 1362, 1456, 2276, 2349
Lsp1109I	GCAGC	5 cut(s)	179, 874, 1489, 1585, 2059
LweI	GCATC	5 cut(s)	1117, 1199, 1283, 1530, 1996
MaeI	CTAG	6 cut(s)	80, 1208, 1254, 2078, 2391, 2651
MaeII	ACGT	1 cut(s)	837
MaeIII	GTNAC	7 cut(s)	54, 289, 322, 1210, 2200, 2299, 2393
MalI	GATC	7 cut(s)	10, 84, 93, 1105, 1638, 2040, 2575
MbiI	CCGCTC	1 cut(s)	1459
MboI	GATC	7 cut(s)	8, 82, 91, 1103, 1636, 2038, 2573
MboII	GAAGA	8 cut(s)	251, 805, 1691, 2372, 2409, 2414, 2545, 2640
MfeI	CAATTG	2 cut(s)	387, 1494
MflI	RGATCY	3 cut(s)	8, 91, 2573
MhlI	GDGCHC	2 cut(s)	2273, 2346
Mly113I	GGCGCC	1 cut(s)	2193
MlyI	GAGTC	6 cut(s)	62, 473, 734, 1361, 2256, 2330
MmeI	TCCRAC	1 cut(s)	388
Mph1103I	ATGCAT	1 cut(s)	2011
MroXI	GAANNNNTTC	1 cut(s)	1950
MslI	CAYNNNNRTG	3 cut(s)	1526, 1632, 2126
MspA1I	CMGCKG	3 cut(s)	365, 421, 434
MspCI	CTTAAG	1 cut(s)	1043
MspR9I	CCNGG	1 cut(s)	735
MunI	CAATTG	2 cut(s)	387, 1494
Mva1269I	GAATGC	1 cut(s)	1055
MvaI	CCWGG	1 cut(s)	735
MwoI	GCNNNNNNNGC	2 cut(s)	1004, 1998
NarI	GGCGCC	1 cut(s)	2193
NcoI	CCATGG	1 cut(s)	59
NdeI	CATATG	1 cut(s)	2053
NdeII	GATC	7 cut(s)	8, 82, 91, 1103, 1636, 2038, 2573
NlaIV	GGNNCC	6 cut(s)	120, 312, 313, 330, 2194, 2575
NmuCI	GTSAC	3 cut(s)	54, 1210, 2200
NsiI	ATGCAT	1 cut(s)	2011
NspI	RCATGY	2 cut(s)	1667, 2679
PagI	TCATGA	2 cut(s)	873, 1689
PciI	ACATGT	1 cut(s)	2675
PciSI	GCTCTTC	1 cut(s)	234
PctI	GAATGC	1 cut(s)	1055
PdmI	GAANNNNTTC	1 cut(s)	1950
PfeI	GAWTC	8 cut(s)	29, 769, 848, 1686, 2033, 2060, 2219, 2471
PkrI	GCNGC	7 cut(s)	66, 169, 864, 1461, 1504, 1600, 2074
Ple19I	CGATCG	1 cut(s)	1106
PleI	GAGTC	6 cut(s)	61, 472, 734, 1361, 2255, 2330
PluTI	GGCGCC	1 cut(s)	2196
PpsI	GAGTC	6 cut(s)	61, 472, 734, 1361, 2255, 2330
PpuMI	RGGWCCY	1 cut(s)	311
PscI	ACATGT	1 cut(s)	2675
PshBI	ATTAAT	1 cut(s)	1632
Psp124BI	GAGCTC	2 cut(s)	2273, 2346
Psp5II	RGGWCCY	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	733
PspFI	CCCAGC	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	6 cut(s)	120, 312, 313, 330, 2194, 2575
PspPI	GGNCC	2 cut(s)	311, 494
PspPPI	RGGWCCY	1 cut(s)	311
PstI	CTGCAG	1 cut(s)	1879
PsuI	RGATCY	3 cut(s)	8, 91, 2573
PvuI	CGATCG	1 cut(s)	1106
PvuII	CAGCTG	2 cut(s)	365, 434
RsaI	GTAC	6 cut(s)	610, 1579, 1662, 2135, 2444, 2455
RsaNI	GTAC	6 cut(s)	609, 1578, 1661, 2134, 2443, 2454
RseI	CAYNNNNRTG	3 cut(s)	1526, 1632, 2126
SacI	GAGCTC	2 cut(s)	2273, 2346
SapI	GCTCTTC	1 cut(s)	234
SatI	GCNGC	7 cut(s)	65, 168, 863, 1460, 1503, 1599, 2073
Sau3AI	GATC	7 cut(s)	8, 82, 91, 1103, 1636, 2038, 2573
Sau96I	GGNCC	2 cut(s)	311, 494
SchI	GAGTC	6 cut(s)	62, 473, 734, 1361, 2256, 2330
ScrFI	CCNGG	1 cut(s)	735
SduI	GDGCHC	2 cut(s)	2273, 2346
SfaNI	GCATC	5 cut(s)	1117, 1199, 1283, 1530, 1996
SfcI	CTRYAG	4 cut(s)	396, 1875, 2205, 2527
SfoI	GGCGCC	1 cut(s)	2194
SinI	GGWCC	2 cut(s)	311, 494
SmiMI	CAYNNNNRTG	3 cut(s)	1526, 1632, 2126
SmlI	CTYRAG	3 cut(s)	857, 1043, 1055
SmoI	CTYRAG	3 cut(s)	857, 1043, 1055
SsiI	CCGC	8 cut(s)	64, 96, 419, 485, 678, 842, 1076, 1459
SspDI	GGCGCC	1 cut(s)	2192
SspI	AATATT	1 cut(s)	969
SspMI	CTAG	6 cut(s)	80, 1208, 1254, 2078, 2391, 2651
SstI	GAGCTC	2 cut(s)	2273, 2346
StyD4I	CCNGG	1 cut(s)	733
StyI	CCWWGG	3 cut(s)	59, 2236, 2650
TaaI	ACNGT	4 cut(s)	123, 516, 900, 1804
TaiI	ACGT	1 cut(s)	840
TaqI	TCGA	6 cut(s)	916, 1062, 1102, 1160, 1270, 1338
TaqII	GACCGA	1 cut(s)	482
TatI	WGTACW	3 cut(s)	1577, 1660, 2442
TauI	GCSGC	2 cut(s)	67, 1462
TfiI	GAWTC	8 cut(s)	29, 769, 848, 1686, 2033, 2060, 2219, 2471
TscAI	CASTG	6 cut(s)	187, 447, 519, 1246, 1807, 1879
TseFI	GTSAC	3 cut(s)	54, 1210, 2200
TseI	GCWGC	5 cut(s)	167, 862, 1502, 1598, 2072
Tsp45I	GTSAC	3 cut(s)	54, 1210, 2200
TspGWI	ACGGA	2 cut(s)	341, 2381
TspRI	CASTG	6 cut(s)	187, 447, 519, 1246, 1807, 1879
Vha464I	CTTAAG	1 cut(s)	1043
VpaK11BI	GGWCC	2 cut(s)	311, 494
VspI	ATTAAT	1 cut(s)	1632
XagI	CCTNNNNNAGG	1 cut(s)	2285
XceI	RCATGY	2 cut(s)	1667, 2679
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XmaJI	CCTAGG	1 cut(s)	2650
XmiI	GTMKAC	2 cut(s)	480, 2433
XmnI	GAANNNNTTC	1 cut(s)	1950
XspI	CTAG	6 cut(s)	80, 1208, 1254, 2078, 2391, 2651
Zsp2I	ATGCAT	1 cut(s)	2011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.