RchiOBHm_Chr4g0387101

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
2361114 .. 2363051
1938 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36044

Sequence Viewer

Length: 1848 bp
ATGGTGCTTTTACCTTCACTCGCAACAAGAGAAGAGCGGGATAAGATTTTGGAAACCACCAAAGGGGTTGTATTGACTGGAGTTGCTGCAAAAGGACAGGTGGGACCCATAATTGTAACGGAACCCACAGACCTCTCTGTTTCCACACAAGCTTCAGCTGGTTCATCTCTCCCTCCATCAATTGAGGCTACAACGTTTGTTGGAGATATACCGCTGGACATCCCAGCTGTGGCAGTGAATTTGGCTGGTATCAATGAGTCTGCACATGATGTAGACCCGCATGCAAGCACTGGTTCTCAGATGGTTACTGAAATCAATGTGGGAATACAGATCAGTGACGATGTGTTGATGCGTGAATATGTTCTCCCAGCAGAGGTTTATGTGAATACTGAAAATGGGCATAATTGGATTGAGATGGTTATTGATTTGGAGAAGCTTGGAGTGTCGGATATCGGTCCTCCAGTAGTGGAAGCATTGTCAAGGACAAAATTCATAGGGCTTTCCGAGGGTTTTAGCTTCCTAAATGGGTTGCCACATCCATCAACTTTTCAGATTGTTAATGTGATTGGTACCGGGGAGAATGTGATGGGGTATTGGACACCTGAAAATGAATTTGTGAGAAACTTGAACTCCAAAACCGCAATGAACAGCTCATTCTCTACTTCCAATAGTAGTCTTGGGTATATTATATGGCCTGGAGACTCCACCTCTACTCCAAAAGGTTGGCAGATTCCTACAAGTAGGACGAAGTTGAAGATTTTACTACCAGTTCAGAGTGGGTTCAAGGAATTTACGAACGTGGCGGATGATTCTAACCTTGAGCAGCAGATTATGATGAAAGAGGAATTTTGCAATGAACAGTTGGCTCTGGTCTATCGATTTTGTAGGTCAGGTCATTTTGATAAGGCAAAAGAGGTGTTGGTGCAAATATTGGAGAGGTGGAAATCAAAAGTTATGGCTAAAATTGCAGGGGAGGAGAATACTAAGAAACCAAATTTTGTTCTTAAGGAATGCCTCAAGCTCGACAATAAGATGGCAGTCTGCTCCATTGACACCCAATCTCGATCGCATCTATTGTCGTGGTTCATTCTTTTCTTTGAACTGGGTAATTGTGAGACATCGAAGGAAACACCACCCTATTGCAGAAAAGCATCGGCCGAAATTAGTCTAGTGACCCAAAGCTTAGTCTCTCAGGTATTCACTGCCATCATTTCCAGTCCTCAATACTTTCGAGCATCTTTTTATGGGGTATTGTATGACTTGATTAAGCTCTATGCTGTGATTTATATTGCTTTCATCGATAATGCTGGAAATTTGCTCCCTGATGACTCATTTGGGATAATGATAAGAAATGGCAAGTTATTTTATGAATATATGAATGTGCTTGCCAAAATGCTTTTAAGGAGTGTTAGTAAGGAGCGGCTGATGAGTTCAAATGTTAGTATAATGGATACAATTGTTGCTGCATTATGTGGAGAGAGCATCACGATGGATGGCGTTGGAAACTCATTTTTGATTTGGTTGCTTGCAATTCATAGTACAAAGTTTAAGAGAGAAGCTGCAAGTATATTACATATCTGGGCATATCATATTAATGATCAAATGGTGGACTGGGATGTTGTACATGCCTTGATGTATGAAGAGGGATTCATTATTGAGTTTGTTGAGAAACCAAAAGACAGGAAATTTGAAGCTTTGATAGATGGTGCTACCAATTTGGGAATTGATGACCTGAACACCCAAGAGACACCTTACCTTACCACTGTGGATATTTATGTTCTTTACAGGAAAGTGATGTCTCATATGCTTCAAGTAAAGTTTTCAGATTTTGGCACTGCAGTTGTTTAG

Protein Analysis

615

Amino Acids

68.38

Weight (kDa)

5.09

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 569
AccB1I GGYRCC 1 cut(s) 569
AccBSI CCGCTC 2 cut(s) 37, 1420
AccI GTMKAC 1 cut(s) 273
AciI CCGC 6 cut(s) 37, 212, 278, 639, 803, 1420
AclI AACGTT 1 cut(s) 194
AcoI YGGCCR 1 cut(s) 1155
AcsI RAATTY 8 cut(s) 238, 488, 611, 788, 845, 994, 1312, 1685
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 3 cut(s) 571, 1540, 1623
AfiI CCNNNNNNNGG 3 cut(s) 63, 229, 373
AflII CTTAAG 1 cut(s) 1004
AgsI TTSAA 7 cut(s) 628, 754, 784, 1100, 1434, 1691, 1811
AjnI CCWGG 1 cut(s) 694
Alw26I GTCTC 5 cut(s) 693, 1109, 1192, 1739, 1803
AoxI GGCC 2 cut(s) 692, 1155
ApeKI GCWGC 4 cut(s) 86, 823, 1463, 1559
ApoI RAATTY 8 cut(s) 238, 488, 611, 788, 845, 994, 1312, 1685
ArsI GACNNNNNNTTYG 2 cut(s) 1670, 1702
AseI ATTAAT 1 cut(s) 1593
Asp700I GAANNNNTTC 1 cut(s) 360
Asp718I GGTACC 1 cut(s) 569
AspS9I GGNCC 2 cut(s) 104, 455
AsuC2I CCSGG 1 cut(s) 574
AvaII GGWCC 2 cut(s) 104, 455
BaeI ACNNNNGTAYC 2 cut(s) 1443, 1476
BanI GGYRCC 1 cut(s) 569
BbvI GCAGC 4 cut(s) 73, 835, 1450, 1546
BciT130I CCWGG 1 cut(s) 696
BciVI GTATCC 1 cut(s) 1444
BclI TGATCA 1 cut(s) 1597
BcnI CCSGG 1 cut(s) 574
BcoDI GTCTC 5 cut(s) 693, 1109, 1192, 1739, 1803
BfaI CTAG 1 cut(s) 1169
BfmI CTRYAG 1 cut(s) 1836
BfrI CTTAAG 1 cut(s) 1004
BfuI GTATCC 1 cut(s) 1444
BisI GCNGC 5 cut(s) 87, 824, 1421, 1464, 1560
BlsI GCNGC 5 cut(s) 88, 825, 1422, 1465, 1561
Bme1390I CCNGG 2 cut(s) 574, 696
Bme18I GGWCC 2 cut(s) 104, 455
BmgT120I GGNCC 2 cut(s) 104, 455
BmiI GGNNCC 4 cut(s) 105, 106, 123, 571
BmrFI CCNGG 2 cut(s) 574, 696
BmrI ACTGGG 2 cut(s) 1112, 1621
BmsI GCATC 5 cut(s) 339, 1078, 1160, 1244, 1491
BmuI ACTGGG 2 cut(s) 1112, 1621
BpmI CTGGAG 3 cut(s) 99, 444, 717
BpuEI CTTGAG 2 cut(s) 839, 1001
BpuMI CCSGG 1 cut(s) 574
Bsa29I ATCGAT 2 cut(s) 877, 1299
BsaJI CCNNGG 2 cut(s) 504, 573
BsaXI ACNNNNNCTCC 6 cut(s) 614, 644, 697, 727, 1396, 1426
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 229, 373
Bse1I ACTGG 7 cut(s) 82, 295, 461, 767, 1107, 1215, 1616
Bse3DI GCAATG 2 cut(s) 648, 859
BseBI CCWGG 1 cut(s) 696
BseCI ATCGAT 2 cut(s) 877, 1299
BseDI CCNNGG 2 cut(s) 504, 573
BseGI GGATG 5 cut(s) 219, 535, 811, 1498, 1621
BseLI CCNNNNNNNGG 3 cut(s) 63, 229, 373
BseMI GCAATG 2 cut(s) 648, 859
BseMII CTCAG 2 cut(s) 311, 1205
BseNI ACTGG 7 cut(s) 82, 295, 461, 767, 1107, 1215, 1616
BseRI GAGGAG 1 cut(s) 989
BseX3I CGGCCG 1 cut(s) 1155
BseXI GCAGC 4 cut(s) 73, 835, 1450, 1546
BseYI CCCAGC 2 cut(s) 223, 367
BsgI GTGCAG 1 cut(s) 246
Bsh1285I CGRYCG 2 cut(s) 1067, 1158
BshFI GGCC 2 cut(s) 694, 1157
BshNI GGYRCC 1 cut(s) 569
BshVI ATCGAT 2 cut(s) 877, 1299
BsiEI CGRYCG 2 cut(s) 1067, 1158
BsiSI CCGG 1 cut(s) 573
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 3 cut(s) 63, 229, 373
BsmAI GTCTC 5 cut(s) 693, 1109, 1192, 1739, 1803
BsmFI GGGAC 1 cut(s) 117
BsmI GAATGC 1 cut(s) 1016
BsnI GGCC 2 cut(s) 694, 1157
Bsp1407I TGTACA 1 cut(s) 1621
Bsp143I GATC 3 cut(s) 330, 1064, 1597
BspACI CCGC 6 cut(s) 37, 212, 278, 639, 803, 1420
BspANI GGCC 2 cut(s) 694, 1157
BspCNI CTCAG 2 cut(s) 310, 1204
BspDI ATCGAT 2 cut(s) 877, 1299
BspLI GGNNCC 4 cut(s) 105, 106, 123, 571
BspMAI CTGCAG 1 cut(s) 1840
BspQI GCTCTTC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 569
BspTI CTTAAG 1 cut(s) 1004
BsrBI CCGCTC 2 cut(s) 37, 1420
BsrDI GCAATG 2 cut(s) 648, 859
BsrGI TGTACA 1 cut(s) 1621
BsrI ACTGG 7 cut(s) 82, 295, 461, 767, 1107, 1215, 1616
BssECI CCNNGG 2 cut(s) 504, 573
BssMI GATC 3 cut(s) 330, 1064, 1597
Bst2UI CCWGG 1 cut(s) 696
Bst4CI ACNGT 2 cut(s) 861, 1765
Bst6I CTCTTC 2 cut(s) 27, 1635
BstAFI CTTAAG 1 cut(s) 1004
BstAUI TGTACA 1 cut(s) 1621
BstC8I GCNNGC 4 cut(s) 282, 286, 1386, 1527
BstDEI CTNAG 4 cut(s) 297, 984, 1183, 1191
BstF5I GGATG 5 cut(s) 219, 535, 811, 1498, 1621
BstKTI GATC 3 cut(s) 333, 1067, 1600
BstMAI GTCTC 5 cut(s) 693, 1109, 1192, 1739, 1803
BstMBI GATC 3 cut(s) 330, 1064, 1597
BstMCI CGRYCG 2 cut(s) 1067, 1158
BstMWI GCNNNNNNNGC 1 cut(s) 965
BstNI CCWGG 1 cut(s) 696
BstNSI RCATGY 2 cut(s) 284, 1628
BstSCI CCNGG 2 cut(s) 572, 694
BstSFI CTRYAG 1 cut(s) 1836
BstV1I GCAGC 4 cut(s) 73, 835, 1450, 1546
BstXI CCANNNNNNTGG 1 cut(s) 723
BstZI CGGCCG 1 cut(s) 1155
Bsu15I ATCGAT 2 cut(s) 877, 1299
BsuI GTATCC 1 cut(s) 1444
BsuRI GGCC 2 cut(s) 694, 1157
BsuTUI ATCGAT 2 cut(s) 877, 1299
BtsCI GGATG 5 cut(s) 219, 535, 811, 1498, 1621
BtsI GCAGTG 3 cut(s) 240, 1200, 1833
BtsIMutI CAGTG 6 cut(s) 240, 288, 340, 1200, 1761, 1833
Cac8I GCNNGC 4 cut(s) 282, 286, 1386, 1527
Cfr13I GGNCC 2 cut(s) 104, 455
ClaI ATCGAT 2 cut(s) 877, 1299
Csp6I GTAC 3 cut(s) 570, 1539, 1622
CviAII CATG 3 cut(s) 266, 281, 1625
CviQI GTAC 3 cut(s) 570, 1539, 1622
DdeI CTNAG 4 cut(s) 297, 984, 1183, 1191
DpnI GATC 3 cut(s) 332, 1066, 1599
DpnII GATC 3 cut(s) 330, 1064, 1597
EaeI YGGCCR 1 cut(s) 1155
EagI CGGCCG 1 cut(s) 1155
Eam1104I CTCTTC 2 cut(s) 27, 1635
EarI CTCTTC 2 cut(s) 27, 1635
EciI GGCGGA 1 cut(s) 818
EclXI CGGCCG 1 cut(s) 1155
Eco32I GATATC 1 cut(s) 451
Eco47I GGWCC 2 cut(s) 104, 455
Eco52I CGGCCG 1 cut(s) 1155
Eco57I CTGAAG 1 cut(s) 138
EcoO109I RGGNCCY 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 694
EcoRV GATATC 1 cut(s) 451
FaeI CATG 3 cut(s) 269, 284, 1628
FaqI GGGAC 1 cut(s) 117
FatI CATG 3 cut(s) 265, 280, 1624
FauI CCCGC 2 cut(s) 30, 285
FauNDI CATATG 1 cut(s) 1803
FbaI TGATCA 1 cut(s) 1597
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 5 cut(s) 87, 824, 1421, 1464, 1560
FokI GGATG 5 cut(s) 206, 522, 818, 1505, 1628
Fsp4HI GCNGC 5 cut(s) 87, 824, 1421, 1464, 1560
FspBI CTAG 1 cut(s) 1169
GluI GCNGC 5 cut(s) 87, 824, 1421, 1464, 1560
GsaI CCCAGC 2 cut(s) 227, 371
GsuI CTGGAG 3 cut(s) 99, 444, 717
HaeIII GGCC 2 cut(s) 694, 1157
HapII CCGG 1 cut(s) 573
Hin1II CATG 3 cut(s) 269, 284, 1628
HindIII AAGCTT 4 cut(s) 150, 434, 1180, 1692
HinfI GANTC 6 cut(s) 257, 701, 730, 809, 1328, 1647
HpaII CCGG 1 cut(s) 573
Hpy166II GTNNAC 2 cut(s) 274, 1609
Hpy188I TCNGA 6 cut(s) 300, 448, 505, 552, 774, 1825
Hpy188III TCNNGA 2 cut(s) 1062, 1486
Hpy8I GTNNAC 2 cut(s) 274, 1609
HpyAV CCTTC 2 cut(s) 24, 1117
HpyCH4III ACNGT 2 cut(s) 861, 1765
HpyCH4IV ACGT 2 cut(s) 194, 798
HpyF10VI GCNNNNNNNGC 1 cut(s) 965
HpyF3I CTNAG 4 cut(s) 297, 984, 1183, 1191
HpySE526I ACGT 2 cut(s) 194, 798
Hsp92II CATG 3 cut(s) 269, 284, 1628
KflI GGGWCCC 1 cut(s) 104
KpnI GGTACC 1 cut(s) 573
Ksp22I TGATCA 1 cut(s) 1597
Kzo9I GATC 3 cut(s) 330, 1064, 1597
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 3 cut(s) 1049, 1323, 1417
Lsp1109I GCAGC 4 cut(s) 73, 835, 1450, 1546
LweI GCATC 5 cut(s) 339, 1078, 1160, 1244, 1491
MaeI CTAG 1 cut(s) 1169
MaeII ACGT 2 cut(s) 194, 798
MaeIII GTNAC 4 cut(s) 115, 304, 335, 1171
MalI GATC 3 cut(s) 332, 1066, 1599
MbiI CCGCTC 2 cut(s) 37, 1420
MboI GATC 3 cut(s) 330, 1064, 1597
MboII GAAGA 3 cut(s) 44, 766, 1652
MfeI CAATTG 2 cut(s) 180, 1455
MlyI GAGTC 3 cut(s) 266, 695, 1322
MmeI TCCRAC 3 cut(s) 181, 426, 1480
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 6 cut(s) 558, 1005, 1266, 1400, 1548, 1593
MslI CAYNNNNRTG 2 cut(s) 1487, 1593
MspA1I CMGCKG 3 cut(s) 158, 214, 227
MspCI CTTAAG 1 cut(s) 1004
MspI CCGG 1 cut(s) 573
MspR9I CCNGG 2 cut(s) 574, 696
MunI CAATTG 2 cut(s) 180, 1455
Mva1269I GAATGC 1 cut(s) 1016
MvaI CCWGG 1 cut(s) 696
MwoI GCNNNNNNNGC 1 cut(s) 965
NciI CCSGG 1 cut(s) 574
NdeI CATATG 1 cut(s) 1803
NdeII GATC 3 cut(s) 330, 1064, 1597
NlaIII CATG 3 cut(s) 269, 284, 1628
NlaIV GGNNCC 4 cut(s) 105, 106, 123, 571
NmuCI GTSAC 2 cut(s) 335, 1171
NspI RCATGY 2 cut(s) 284, 1628
PaeI GCATGC 1 cut(s) 284
PciSI GCTCTTC 1 cut(s) 27
PctI GAATGC 1 cut(s) 1016
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 3 cut(s) 730, 809, 1647
PkrI GCNGC 5 cut(s) 88, 825, 1422, 1465, 1561
Ple19I CGATCG 1 cut(s) 1067
PleI GAGTC 3 cut(s) 265, 695, 1322
PpsI GAGTC 3 cut(s) 265, 695, 1322
PpuMI RGGWCCY 1 cut(s) 104
PshBI ATTAAT 1 cut(s) 1593
Psp1406I AACGTT 1 cut(s) 194
Psp5II RGGWCCY 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 694
PspFI CCCAGC 2 cut(s) 223, 367
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 4 cut(s) 105, 106, 123, 571
PspPI GGNCC 2 cut(s) 104, 455
PspPPI RGGWCCY 1 cut(s) 104
PstI CTGCAG 1 cut(s) 1840
PvuI CGATCG 1 cut(s) 1067
PvuII CAGCTG 2 cut(s) 158, 227
RsaI GTAC 3 cut(s) 571, 1540, 1623
RsaNI GTAC 3 cut(s) 570, 1539, 1622
RseI CAYNNNNRTG 2 cut(s) 1487, 1593
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 6 cut(s) 558, 1005, 1266, 1400, 1548, 1593
SatI GCNGC 5 cut(s) 87, 824, 1421, 1464, 1560
Sau3AI GATC 3 cut(s) 330, 1064, 1597
Sau96I GGNCC 2 cut(s) 104, 455
SchI GAGTC 3 cut(s) 266, 695, 1322
ScrFI CCNGG 2 cut(s) 574, 696
SfaNI GCATC 5 cut(s) 339, 1078, 1160, 1244, 1491
SfcI CTRYAG 1 cut(s) 1836
SinI GGWCC 2 cut(s) 104, 455
SmiMI CAYNNNNRTG 2 cut(s) 1487, 1593
SmlI CTYRAG 3 cut(s) 818, 1004, 1016
SmoI CTYRAG 3 cut(s) 818, 1004, 1016
SphI GCATGC 1 cut(s) 284
SsiI CCGC 6 cut(s) 37, 212, 278, 639, 803, 1420
SspI AATATT 1 cut(s) 930
SspMI CTAG 1 cut(s) 1169
StyD4I CCNGG 2 cut(s) 572, 694
TaaI ACNGT 2 cut(s) 861, 1765
TaiI ACGT 2 cut(s) 197, 801
TaqI TCGA 6 cut(s) 877, 1023, 1063, 1121, 1231, 1299
TaqII GACCGA 1 cut(s) 443
TatI WGTACW 2 cut(s) 1538, 1621
TauI GCSGC 1 cut(s) 1423
TfiI GAWTC 3 cut(s) 730, 809, 1647
Tru1I TTAA 6 cut(s) 558, 1005, 1266, 1400, 1548, 1593
Tru9I TTAA 6 cut(s) 558, 1005, 1266, 1400, 1548, 1593
TscAI CASTG 6 cut(s) 240, 295, 340, 1207, 1768, 1840
TseFI GTSAC 2 cut(s) 335, 1171
TseI GCWGC 4 cut(s) 86, 823, 1463, 1559
Tsp45I GTSAC 2 cut(s) 335, 1171
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 6 cut(s) 240, 295, 340, 1207, 1768, 1840
Vha464I CTTAAG 1 cut(s) 1004
VpaK11BI GGWCC 2 cut(s) 104, 455
VspI ATTAAT 1 cut(s) 1593
XapI RAATTY 8 cut(s) 238, 488, 611, 788, 845, 994, 1312, 1685
XceI RCATGY 2 cut(s) 284, 1628
XmiI GTMKAC 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 1 cut(s) 1169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.