RLG00000036164

calcium-dependent protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003456
Physical Location & Seq
Reverse (-)
76805317 .. 76806548
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036164

Sequence Viewer

Length: 624 bp
ATGTCAACTGATGTTATAGACAATAGTAATCTTCGGGAGTTTCTTGCTGCTACCTTGCTTCTAAATAATGTGGAAAGAGATGAGAATTTAATTGCAGCTCTTGCATCATCTCTTGGGAAAGATTATCGTGGTTGCATTAAAAATGGTGAGCTTGATCAGTCTTGCAAGAAGATTTATCTATGTCATGATCAATTCAAAGCATTTGTAAGGTCAAACTTGTACATCTGCAAATGGTTTGGGTTGTCAGTGATTTATGATGAAAGCTGCATTAATGGATCTGTCACAAAAACAAAAGAGAAGCAACTCAAAGCTATGGTAACTGACACTAGCTTGGGTAGTGACTTGGATGATGAAGTAGGGAGACCAGCTAAGGTACGAACTGACATAGATCAAGCCTCTCAAGTTTGGCTATTTGCATGGAGGACTTTTTCACTTGCCACTCAAGCTTGGCTATTTGCATGGAGGACCTTTTCTCTTGCCACCTTTCTGATTCTAGGTGCACTGCTGATATCAATCACACATGAAATGAGTATCATTGCTGCATCATTTGTTCAGCTCAGTATTCAGGTTGACTGGTACAACAATGATCAGCCTTTAACAGGTATTGATAAGACACTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009931 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010769 GO:0010857 GO:0010959 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0022898 GO:0023051 GO:0023052 GO:0023056 GO:0032409 GO:0032412 GO:0032870 GO:0032879 GO:0033993 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043269 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0060284 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080092 GO:0097305 GO:0097306 GO:0140096 GO:1901016 GO:1901379 GO:1901419 GO:1901421 GO:1901564 GO:1901700 GO:1901701 GO:1901979 GO:1904062 GO:1905957 GO:1905959 GO:2000241 GO:2001257
KEGG Pathways
Metabolic & Signaling
ko04626 ko05145 map04626 map05145
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

208

Amino Acids

23.3

Weight (kDa)

5.2

Isoelectric Point (pI)

24.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 283
AcsI RAATTY 1 cut(s) 85
AfaI GTAC 3 cut(s) 221, 375, 578
AfiI CCNNNNNNNGG 1 cut(s) 599
AgsI TTSAA 1 cut(s) 196
AluBI AGCT 8 cut(s) 98, 151, 264, 311, 330, 368, 446, 556
AluI AGCT 8 cut(s) 98, 151, 264, 311, 330, 368, 446, 556
Alw21I GWGCWC 1 cut(s) 502
Alw26I GTCTC 1 cut(s) 355
Alw44I GTGCAC 1 cut(s) 498
AlwI GGATC 1 cut(s) 283
ApaLI GTGCAC 1 cut(s) 498
ApeKI GCWGC 4 cut(s) 47, 95, 264, 539
ApoI RAATTY 1 cut(s) 85
AseI ATTAAT 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 465
AsuHPI GGTGA 1 cut(s) 158
AvaII GGWCC 1 cut(s) 465
BaeGI GKGCMC 1 cut(s) 502
Bbv12I GWGCWC 1 cut(s) 502
BbvI GCAGC 4 cut(s) 34, 107, 251, 526
BclI TGATCA 3 cut(s) 154, 187, 586
BcoDI GTCTC 1 cut(s) 355
BfaI CTAG 2 cut(s) 327, 494
BisI GCNGC 4 cut(s) 48, 96, 265, 540
BlsI GCNGC 4 cut(s) 49, 97, 266, 541
Bme18I GGWCC 1 cut(s) 465
BmgT120I GGNCC 1 cut(s) 465
BmsI GCATC 2 cut(s) 113, 551
Bpu10I CCTNAGC 1 cut(s) 369
BpuEI CTTGAG 2 cut(s) 384, 426
BsaBI GATNNNNATC 1 cut(s) 512
BsaI GGTCTC 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 599
Bse1I ACTGG 1 cut(s) 578
Bse3DI GCAATG 1 cut(s) 534
Bse8I GATNNNNATC 1 cut(s) 512
BseGI GGATG 1 cut(s) 352
BseJI GATNNNNATC 1 cut(s) 512
BseLI CCNNNNNNNGG 1 cut(s) 599
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 1 cut(s) 571
BseNI ACTGG 1 cut(s) 578
BseSI GKGCMC 1 cut(s) 502
BseXI GCAGC 4 cut(s) 34, 107, 251, 526
BsiHKAI GWGCWC 1 cut(s) 502
BslI CCNNNNNNNGG 1 cut(s) 599
BsmAI GTCTC 1 cut(s) 355
Bso31I GGTCTC 1 cut(s) 355
Bsp1286I GDGCHC 1 cut(s) 502
Bsp1407I TGTACA 1 cut(s) 219
Bsp143I GATC 5 cut(s) 154, 187, 275, 388, 586
BspCNI CTCAG 1 cut(s) 570
BspHI TCATGA 1 cut(s) 184
BspPI GGATC 1 cut(s) 283
BspTNI GGTCTC 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 534
BsrGI TGTACA 1 cut(s) 219
BsrI ACTGG 1 cut(s) 578
BssMI GATC 5 cut(s) 154, 187, 275, 388, 586
BstAPI GCANNNNNTGC 1 cut(s) 101
BstAUI TGTACA 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 369, 557
BstENI CCTNNNNNAGG 1 cut(s) 597
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 5 cut(s) 157, 190, 278, 391, 589
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 5 cut(s) 154, 187, 275, 388, 586
BstMWI GCNNNNNNNGC 2 cut(s) 101, 443
BstSLI GKGCMC 1 cut(s) 502
BstV1I GCAGC 4 cut(s) 34, 107, 251, 526
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BtsCI GGATG 1 cut(s) 352
BtsI GCAGTG 1 cut(s) 500
BtsIMutI CAGTG 3 cut(s) 252, 500, 614
CciI TCATGA 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 465
Csp6I GTAC 3 cut(s) 220, 374, 577
CviAII CATG 4 cut(s) 185, 417, 459, 521
CviQI GTAC 3 cut(s) 220, 374, 577
DdeI CTNAG 2 cut(s) 369, 557
DpnI GATC 5 cut(s) 156, 189, 277, 390, 588
DpnII GATC 5 cut(s) 154, 187, 275, 388, 586
Eco31I GGTCTC 1 cut(s) 355
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 465
EcoNI CCTNNNNNAGG 1 cut(s) 597
EcoO109I RGGNCCY 1 cut(s) 465
EcoRV GATATC 1 cut(s) 510
FaeI CATG 4 cut(s) 188, 420, 462, 524
FatI CATG 4 cut(s) 184, 416, 458, 520
FbaI TGATCA 3 cut(s) 154, 187, 586
Fnu4HI GCNGC 4 cut(s) 48, 96, 265, 540
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 4 cut(s) 48, 96, 265, 540
FspBI CTAG 2 cut(s) 327, 494
GluI GCNGC 4 cut(s) 48, 96, 265, 540
Hin1II CATG 4 cut(s) 188, 420, 462, 524
HincII GTYRAC 2 cut(s) 6, 571
HindII GTYRAC 2 cut(s) 6, 571
HindIII AAGCTT 1 cut(s) 444
HinfI GANTC 1 cut(s) 490
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 3 cut(s) 6, 500, 571
Hpy188I TCNGA 1 cut(s) 489
Hpy188III TCNNGA 2 cut(s) 35, 185
Hpy8I GTNNAC 3 cut(s) 6, 500, 571
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 443
HpyF3I CTNAG 2 cut(s) 369, 557
Hsp92II CATG 4 cut(s) 188, 420, 462, 524
Ksp22I TGATCA 3 cut(s) 154, 187, 586
Kzo9I GATC 5 cut(s) 154, 187, 275, 388, 586
LpnPI CCDG 4 cut(s) 378, 551, 559, 585
Lsp1109I GCAGC 4 cut(s) 34, 107, 251, 526
LweI GCATC 2 cut(s) 113, 551
MaeI CTAG 2 cut(s) 327, 494
MaeIII GTNAC 3 cut(s) 280, 316, 338
MalI GATC 5 cut(s) 156, 189, 277, 390, 588
MboI GATC 5 cut(s) 154, 187, 275, 388, 586
MboII GAAGA 2 cut(s) 23, 181
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 1 cut(s) 502
MluCI AATT 3 cut(s) 85, 90, 191
MnlI CCTC 3 cut(s) 406, 414, 456
MseI TTAA 4 cut(s) 89, 138, 270, 596
MslI CAYNNNNRTG 1 cut(s) 619
MwoI GCNNNNNNNGC 2 cut(s) 101, 443
NdeII GATC 5 cut(s) 154, 187, 275, 388, 586
NlaIII CATG 4 cut(s) 188, 420, 462, 524
NmuCI GTSAC 2 cut(s) 280, 338
PagI TCATGA 1 cut(s) 184
PfeI GAWTC 1 cut(s) 490
PkrI GCNGC 4 cut(s) 49, 97, 266, 541
PpuMI RGGWCCY 1 cut(s) 465
PshBI ATTAAT 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 465
PspPI GGNCC 1 cut(s) 465
PspPPI RGGWCCY 1 cut(s) 465
PsuI RGATCY 1 cut(s) 275
RsaI GTAC 3 cut(s) 221, 375, 578
RsaNI GTAC 3 cut(s) 220, 374, 577
RseI CAYNNNNRTG 1 cut(s) 619
SaqAI TTAA 4 cut(s) 89, 138, 270, 596
SatI GCNGC 4 cut(s) 48, 96, 265, 540
Sau3AI GATC 5 cut(s) 154, 187, 275, 388, 586
Sau96I GGNCC 1 cut(s) 465
SduI GDGCHC 1 cut(s) 502
SfaNI GCATC 2 cut(s) 113, 551
SinI GGWCC 1 cut(s) 465
SmiMI CAYNNNNRTG 1 cut(s) 619
SmlI CTYRAG 2 cut(s) 399, 441
SmoI CTYRAG 2 cut(s) 399, 441
Sse9I AATT 3 cut(s) 85, 90, 191
SspMI CTAG 2 cut(s) 327, 494
TasI AATT 3 cut(s) 85, 90, 191
TatI WGTACW 1 cut(s) 219
TfiI GAWTC 1 cut(s) 490
Tru1I TTAA 4 cut(s) 89, 138, 270, 596
Tru9I TTAA 4 cut(s) 89, 138, 270, 596
TscAI CASTG 3 cut(s) 252, 507, 621
TseFI GTSAC 2 cut(s) 280, 338
TseI GCWGC 4 cut(s) 47, 95, 264, 539
Tsp45I GTSAC 2 cut(s) 280, 338
TspDTI ATGAA 3 cut(s) 273, 366, 537
TspRI CASTG 3 cut(s) 252, 507, 621
VneI GTGCAC 1 cut(s) 498
VpaK11BI GGWCC 1 cut(s) 465
VspI ATTAAT 1 cut(s) 270
XagI CCTNNNNNAGG 1 cut(s) 597
XapI RAATTY 1 cut(s) 85
XspI CTAG 2 cut(s) 327, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.