Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Reverse (-)

56797162 .. 56804461

Gene Structure 7300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG343700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGCAAAAGGTTCTCAAGAACTTCAAGGTTCCGAGAATACAGAAAGAGTTTATAGAAGAGGCAACCCATCCACCGGAAAAACGACCAGAGCCTCTAAATGGTGGGATCTTTGCAGATGATATGGCTTTAGGTAAGACTCTGACTTTGGCTTCCTCGATTGCTTTTGTTAAATACGGTAGTAGCGATGGCAACAGTGCTAGTGTAGATGAAAGCATACCGTATGATAATGAAATGGGTGAGGATAGCAGTGAAAAGGAAGAATTTGTGAGTGTAACTGATAAGGGTCACCAAAATTGGGGTAAAGTAACTGGTGAATACCTTCCTTTCCCTGATGGTGGAACTCAGTTTAAGAATGGTGTTCTTCACTATATTGATTTTATTCAAAAAACTCTTCCTGAGTTTCTGTGGGGTAAAAGAAGCCGTGTGATATTGGATGTTGGGTGTGGTAACCTGCTTTTGGAGCTTAATTGTGTCTTGCAACCTGGAGGTTACTTTGTGTGGTCTGCAACTCTAATTTACCAAAACCTTCCTGACGATGTTGGCATCTGGAAAGTGATGTCTGAACTAATGCAGTCAAATTGCTGGGATTTGGTGATGATTAGAAACGATAAGCTCAATCAAGTCACTGATGCTATATATAGGAAACCATCTACCAATGAGTGCTATACTGAAAGAGCACAAAATCAGCCTCCTCTTTGCATGTTCATTGAAATGTCAAAGGTTCTTACATTGATGCCATCCCATACTATGGTATCTTACAAGTCAGTACATCTAACTTGCTTCAATCACATGGTGATAATTCTCATCTTGAAATCCCAGAAGCACGAGCACTCTATGTCTGCAATAGGAAGTGCATTGGTCCTAGTTGTGAAAGCTATGAAGGCTATGAAGCAGAAGTTGCAGACAAACCAACTACCGGACAACAGAGGCAGCAAGGCCCTCGGTGCCCAAGGCGAGGTGGCGCGTGCATTACACAGCCTCTTCATTGTTTTAGCTCCCAATCCTTGTAGCCGCTTGGATTTAAAGGATCGATCAGGAAATATGATGCTTGATTTGGCGTACGCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005911 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009506 GO:0012505 GO:0016740 GO:0016741 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

356

Amino Acids

39.84

Weight (kDa)

6.51

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	92 - 149	3.2e-17	Putative S-adenosyl-L-methionine-dependent methyltransferase
Methyltransf_29	PF03141	149 - 234	1.4e-17	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	459
AccB1I	GGYRCC	1 cut(s)	944
AccB7I	CCANNNNNTGG	1 cut(s)	748
AccII	CGCG	1 cut(s)	964
AciI	CCGC	1 cut(s)	1012
AclWI	GGATC	2 cut(s)	113, 1035
AcsI	RAATTY	1 cut(s)	260
AdeI	CACNNNGTG	1 cut(s)	793
AfaI	GTAC	2 cut(s)	768, 1061
AfiI	CCNNNNNNNGG	8 cut(s)	73, 98, 295, 335, 457, 748, 916, 955
AgsI	TTSAA	5 cut(s)	25, 383, 710, 784, 811
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	4 cut(s)	463, 613, 875, 995
AluI	AGCT	4 cut(s)	463, 613, 875, 995
Alw21I	GWGCWC	2 cut(s)	679, 831
AlwI	GGATC	2 cut(s)	113, 1035
AoxI	GGCC	1 cut(s)	936
ApeKI	GCWGC	1 cut(s)	930
ApoI	RAATTY	1 cut(s)	260
ArsI	GACNNNNNNTTYG	2 cut(s)	127, 159
Asp700I	GAANNNNTTC	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	964
AspS9I	GGNCC	2 cut(s)	859, 937
AsuHPI	GGTGA	5 cut(s)	248, 278, 323, 604, 805
AvaII	GGWCC	1 cut(s)	859
BaeGI	GKGCMC	1 cut(s)	949
BaeI	ACNNNNGTAYC	2 cut(s)	735, 768
BanI	GGYRCC	1 cut(s)	944
BauI	CACGAG	1 cut(s)	824
Bbv12I	GWGCWC	2 cut(s)	679, 831
BbvI	GCAGC	1 cut(s)	942
BccI	CCATC	5 cut(s)	75, 179, 326, 655, 745
BceAI	ACGGC	1 cut(s)	405
BcgI	CGANNNNNNTGC	2 cut(s)	922, 956
BciT130I	CCWGG	1 cut(s)	483
BfaI	CTAG	2 cut(s)	198, 863
BfuAI	ACCTGC	1 cut(s)	459
BisI	GCNGC	2 cut(s)	931, 1012
BlsI	GCNGC	2 cut(s)	932, 1013
Bme1390I	CCNGG	1 cut(s)	483
Bme18I	GGWCC	1 cut(s)	859
BmgT120I	GGNCC	2 cut(s)	859, 937
BmiI	GGNNCC	2 cut(s)	30, 946
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	4 cut(s)	552, 619, 723, 1035
BpmI	CTGGAG	1 cut(s)	504
Bsa29I	ATCGAT	1 cut(s)	1030
BsaJI	CCNNGG	2 cut(s)	940, 949
BsaWI	WCCGGW	2 cut(s)	73, 916
Bsc4I	CCNNNNNNNGG	8 cut(s)	73, 98, 295, 335, 457, 748, 916, 955
Bse1I	ACTGG	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	483
BseCI	ATCGAT	1 cut(s)	1030
BseDI	CCNNGG	2 cut(s)	940, 949
BseGI	GGATG	3 cut(s)	67, 439, 737
BseLI	CCNNNNNNNGG	8 cut(s)	73, 98, 295, 335, 457, 748, 916, 955
BseMII	CTCAG	2 cut(s)	356, 387
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	681
BseSI	GKGCMC	1 cut(s)	949
BseXI	GCAGC	1 cut(s)	942
BseYI	CCCAGC	1 cut(s)	582
Bsh1236I	CGCG	1 cut(s)	964
BshFI	GGCC	1 cut(s)	938
BshNI	GGYRCC	1 cut(s)	944
BshVI	ATCGAT	1 cut(s)	1030
BsiHKAI	GWGCWC	2 cut(s)	679, 831
BsiSI	CCGG	2 cut(s)	74, 917
BsiWI	CGTACG	1 cut(s)	1059
BslI	CCNNNNNNNGG	8 cut(s)	73, 98, 295, 335, 457, 748, 916, 955
BsnI	GGCC	1 cut(s)	938
Bsp1286I	GDGCHC	3 cut(s)	679, 831, 949
Bsp143I	GATC	3 cut(s)	105, 1027, 1031
BspACI	CCGC	1 cut(s)	1012
BspANI	GGCC	1 cut(s)	938
BspCNI	CTCAG	2 cut(s)	355, 388
BspDI	ATCGAT	1 cut(s)	1030
BspFNI	CGCG	1 cut(s)	964
BspLI	GGNNCC	2 cut(s)	30, 946
BspMI	ACCTGC	1 cut(s)	459
BspPI	GGATC	2 cut(s)	113, 1035
BspT107I	GGYRCC	1 cut(s)	944
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	2 cut(s)	940, 949
BssMI	GATC	3 cut(s)	105, 1027, 1031
BssSI	CACGAG	1 cut(s)	824
BssT1I	CCWWGG	1 cut(s)	949
Bst2BI	CACGAG	1 cut(s)	824
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	3 cut(s)	176, 194, 219
Bst6I	CTCTTC	3 cut(s)	51, 396, 986
BstAPI	GCANNNNNTGC	1 cut(s)	898
BstC8I	GCNNGC	1 cut(s)	966
BstDEI	CTNAG	2 cut(s)	342, 396
BstEII	GGTNACC	2 cut(s)	284, 446
BstF5I	GGATG	3 cut(s)	67, 439, 737
BstFNI	CGCG	1 cut(s)	964
BstHHI	GCGC	1 cut(s)	964
BstKTI	GATC	3 cut(s)	108, 1030, 1034
BstMBI	GATC	3 cut(s)	105, 1027, 1031
BstMWI	GCNNNNNNNGC	4 cut(s)	460, 881, 898, 944
BstNI	CCWGG	1 cut(s)	483
BstNSI	RCATGY	1 cut(s)	703
BstPI	GGTNACC	2 cut(s)	284, 446
BstSCI	CCNGG	1 cut(s)	481
BstSLI	GKGCMC	1 cut(s)	949
BstUI	CGCG	1 cut(s)	964
BstV1I	GCAGC	1 cut(s)	942
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
Bsu15I	ATCGAT	1 cut(s)	1030
BsuRI	GGCC	1 cut(s)	938
BsuTUI	ATCGAT	1 cut(s)	1030
BtgZI	GCGATG	1 cut(s)	198
BtsCI	GGATG	3 cut(s)	67, 439, 737
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	3 cut(s)	199, 253, 624
BveI	ACCTGC	1 cut(s)	459
Cac8I	GCNNGC	1 cut(s)	966
CfoI	GCGC	1 cut(s)	964
Cfr13I	GGNCC	2 cut(s)	859, 937
ClaI	ATCGAT	1 cut(s)	1030
Csp6I	GTAC	2 cut(s)	767, 1060
CviAII	CATG	2 cut(s)	700, 790
CviQI	GTAC	2 cut(s)	767, 1060
DdeI	CTNAG	2 cut(s)	342, 396
DpnI	GATC	3 cut(s)	107, 1029, 1033
DpnII	GATC	3 cut(s)	105, 1027, 1031
DraI	TTTAAA	1 cut(s)	1023
DraIII	CACNNNGTG	1 cut(s)	793
Eam1104I	CTCTTC	3 cut(s)	51, 396, 986
EarI	CTCTTC	3 cut(s)	51, 396, 986
Eco130I	CCWWGG	1 cut(s)	949
Eco47I	GGWCC	1 cut(s)	859
Eco91I	GGTNACC	2 cut(s)	284, 446
EcoO109I	RGGNCCY	1 cut(s)	937
EcoO65I	GGTNACC	2 cut(s)	284, 446
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	949
ErhI	CCWWGG	1 cut(s)	949
FaeI	CATG	2 cut(s)	703, 793
FatI	CATG	2 cut(s)	699, 789
Fnu4HI	GCNGC	2 cut(s)	931, 1012
FokI	GGATG	3 cut(s)	54, 446, 724
Fsp4HI	GCNGC	2 cut(s)	931, 1012
FspBI	CTAG	2 cut(s)	198, 863
GlaI	GCGC	1 cut(s)	963
GluI	GCNGC	2 cut(s)	931, 1012
GsaI	CCCAGC	1 cut(s)	586
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	1 cut(s)	938
HapII	CCGG	2 cut(s)	74, 917
HhaI	GCGC	1 cut(s)	964
Hin1II	CATG	2 cut(s)	703, 793
Hin6I	GCGC	1 cut(s)	962
HinP1I	GCGC	1 cut(s)	962
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	2 cut(s)	74, 917
HphI	GGTGA	5 cut(s)	248, 278, 323, 604, 805
Hpy188I	TCNGA	3 cut(s)	33, 141, 562
Hpy188III	TCNNGA	6 cut(s)	16, 395, 530, 547, 808, 1035
HpyAV	CCTTC	3 cut(s)	329, 536, 874
HpyCH4III	ACNGT	3 cut(s)	176, 194, 219
HpyF10VI	GCNNNNNNNGC	4 cut(s)	460, 881, 898, 944
HpyF3I	CTNAG	2 cut(s)	342, 396
Hsp92II	CATG	2 cut(s)	703, 793
HspAI	GCGC	1 cut(s)	962
Kzo9I	GATC	3 cut(s)	105, 1027, 1031
LmnI	GCTCC	2 cut(s)	460, 1000
Lsp1109I	GCAGC	1 cut(s)	942
LweI	GCATC	4 cut(s)	552, 619, 723, 1035
MaeI	CTAG	2 cut(s)	198, 863
MaeIII	GTNAC	6 cut(s)	271, 284, 304, 446, 488, 622
MalI	GATC	3 cut(s)	107, 1029, 1033
MboI	GATC	3 cut(s)	105, 1027, 1031
MboII	GAAGA	5 cut(s)	68, 269, 353, 383, 973
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	3 cut(s)	679, 831, 949
MluCI	AATT	6 cut(s)	260, 292, 466, 513, 577, 798
MlyI	GAGTC	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	318
MseI	TTAA	5 cut(s)	168, 348, 465, 1022, 1069
MslI	CAYNNNNRTG	1 cut(s)	710
MspI	CCGG	2 cut(s)	74, 917
MspR9I	CCNGG	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	483
MvnI	CGCG	1 cut(s)	964
MwoI	GCNNNNNNNGC	4 cut(s)	460, 881, 898, 944
NdeII	GATC	3 cut(s)	105, 1027, 1031
NlaIII	CATG	2 cut(s)	703, 793
NlaIV	GGNNCC	2 cut(s)	30, 946
NmuCI	GTSAC	2 cut(s)	284, 622
NspI	RCATGY	1 cut(s)	703
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	318
Pfl23II	CGTACG	1 cut(s)	1059
PflMI	CCANNNNNTGG	1 cut(s)	748
PkrI	GCNGC	2 cut(s)	932, 1013
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	481
PspEI	GGTNACC	2 cut(s)	284, 446
PspFI	CCCAGC	1 cut(s)	582
PspGI	CCWGG	1 cut(s)	481
PspLI	CGTACG	1 cut(s)	1059
PspN4I	GGNNCC	2 cut(s)	30, 946
PspPI	GGNCC	2 cut(s)	859, 937
PsuI	RGATCY	1 cut(s)	105
RsaI	GTAC	2 cut(s)	768, 1061
RsaNI	GTAC	2 cut(s)	767, 1060
RseI	CAYNNNNRTG	1 cut(s)	710
SaqAI	TTAA	5 cut(s)	168, 348, 465, 1022, 1069
SatI	GCNGC	2 cut(s)	931, 1012
Sau3AI	GATC	3 cut(s)	105, 1027, 1031
Sau96I	GGNCC	2 cut(s)	859, 937
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	483
SduI	GDGCHC	3 cut(s)	679, 831, 949
SfaNI	GCATC	4 cut(s)	552, 619, 723, 1035
SinI	GGWCC	1 cut(s)	859
SmiMI	CAYNNNNRTG	1 cut(s)	710
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	6 cut(s)	260, 292, 466, 513, 577, 798
SsiI	CCGC	1 cut(s)	1012
SspMI	CTAG	2 cut(s)	198, 863
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	1 cut(s)	949
TaaI	ACNGT	3 cut(s)	176, 194, 219
TaqI	TCGA	2 cut(s)	155, 1030
TasI	AATT	6 cut(s)	260, 292, 466, 513, 577, 798
TatI	WGTACW	1 cut(s)	766
TauI	GCSGC	1 cut(s)	1014
Tru1I	TTAA	5 cut(s)	168, 348, 465, 1022, 1069
Tru9I	TTAA	5 cut(s)	168, 348, 465, 1022, 1069
TscAI	CASTG	3 cut(s)	199, 253, 631
TseFI	GTSAC	2 cut(s)	284, 622
TseI	GCWGC	1 cut(s)	930
Tsp45I	GTSAC	2 cut(s)	284, 622
TspDTI	ATGAA	6 cut(s)	222, 243, 694, 893, 902, 973
TspRI	CASTG	3 cut(s)	199, 253, 631
Van91I	CCANNNNNTGG	1 cut(s)	748
VpaK11BI	GGWCC	1 cut(s)	859
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	1 cut(s)	703
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	2 cut(s)	198, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.