Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022560.1

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Forward (+)

69 .. 2192

Gene Structure 2124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022560.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

atgggcattagtacgggtaatagggagcctgagattcaaagcacggaaggggtgtctagtgtgatgtggaagaataatgctcaatcacatcatttccagcacactgactttggtaatggttcatctgttgggaacttacttctctattctgaggttcttacttccatggaagttgacaacggattcttgaatggtaattttctgcttttacctcttgagaacatgagtttgcttcttgctgataagtgggagataatggacaaaattgtgaaaatgatgtttgttgacaattgggagagatggaaatatttagtaattgcagcaaataagaatggtactaaagagttgcatatgaatctctttgaaaaccatatggagccgcatgagaagtgttcgggcacgcatacttctcatcctcacggtagccctagctacccaccagcgccttcccgattcccattgcacccaagctacccactacctcctcaatttccattccaaccaagttactccccaccaccaccacattcccaaaccatcatcaatggctacacatttccaccacacttcccttacccaaatcaaactcatatgtccaccaaccaactcatttacccatactttcaagccatggtcgaaccagagtttccttcgtttcaaccacagtacgccatgaatccttcaattccaacctttcagtcaccctcagtccccacttttgttcaaccccaaccccaatttacagatcccatacctccatcttctaattgttcaatgggtaactgtgagcccctagctccaatcacgagtaggatccgaaccatatcatcttcctcttcttcatcatctgacccacaaacccacgaagatacaataaacccatcttctctgccgccactttcgggtgtttcggtgcaacaggaggtccttcgctctaagccggctttctccgcctttatcgacaagctcgggaagctcgagatgctttgccagcctccctcagtcatcgacaccgaggaggtcagccttgcctcactgggccggaattccgatgaggaatgcaaaagcgacgacgccatcatccccaaaggcaccactaacggtgtcaacctcgccagcactcccgagctccaccccgaactcgtcagcctcaacactgctccgtcgattctgaacctcctcaaccatgacagcaccgacattgcaattgacaccgttcagttccttctgttgtctgattccgacgcgagtgagatggcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CTNNBL

Protein Analysis

420

Amino Acids

46.39

Weight (kDa)

4.93

Isoelectric Point (pI)

50.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1091
AccII	CGCG	1 cut(s)	1247
AciI	CCGC	3 cut(s)	380, 893, 951
AclWI	GGATC	3 cut(s)	740, 808, 821
AcsI	RAATTY	1 cut(s)	1045
AcyI	GRCGYC	1 cut(s)	1074
AfaI	GTAC	3 cut(s)	13, 337, 668
AfiI	CCNNNNNNNGG	1 cut(s)	902
AgsI	TTSAA	8 cut(s)	38, 190, 365, 626, 659, 684, 725, 774
AluBI	AGCT	6 cut(s)	432, 471, 797, 967, 976, 1129
AluI	AGCT	6 cut(s)	432, 471, 797, 967, 976, 1129
Alw21I	GWGCWC	1 cut(s)	1131
AlwI	GGATC	3 cut(s)	740, 808, 821
Ama87I	CYCGRG	3 cut(s)	968, 977, 1124
AoxI	GGCC	1 cut(s)	1039
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	1 cut(s)	1045
AspLEI	GCGC	1 cut(s)	445
AspS9I	GGNCC	2 cut(s)	925, 1039
AsuHPI	GGTGA	1 cut(s)	693
AvaI	CYCGRG	3 cut(s)	968, 977, 1124
AvaII	GGWCC	1 cut(s)	925
BaeGI	GKGCMC	1 cut(s)	401
BamHI	GGATCC	1 cut(s)	813
BanI	GGYRCC	1 cut(s)	1091
BanII	GRGCYC	2 cut(s)	792, 1131
BauI	CACGAG	1 cut(s)	805
Bbv12I	GWGCWC	1 cut(s)	1131
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	6 cut(s)	294, 545, 766, 889, 1085, 1249
BfaI	CTAG	3 cut(s)	57, 429, 794
BfoI	RGCGCY	1 cut(s)	446
BisI	GCNGC	3 cut(s)	321, 380, 893
BlsI	GCNGC	3 cut(s)	322, 381, 894
Bme18I	GGWCC	1 cut(s)	925
BmeT110I	CYCGRG	3 cut(s)	968, 977, 1124
BmgT120I	GGNCC	2 cut(s)	925, 1039
BmiI	GGNNCC	4 cut(s)	27, 378, 815, 1093
BmrI	ACTGGG	1 cut(s)	1046
BmsI	GCATC	1 cut(s)	972
BmuI	ACTGGG	1 cut(s)	1046
BpuEI	CTTGAG	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	1074
BsaJI	CCNNGG	3 cut(s)	165, 630, 1014
Bsc4I	CCNNNNNNNGG	1 cut(s)	902
Bse118I	RCCGGY	1 cut(s)	940
Bse1I	ACTGG	1 cut(s)	1041
Bse3DI	GCAATG	2 cut(s)	458, 1200
BseDI	CCNNGG	3 cut(s)	165, 630, 1014
BseGI	GGATG	2 cut(s)	412, 1080
BseLI	CCNNNNNNNGG	1 cut(s)	902
BseMI	GCAATG	2 cut(s)	458, 1200
BseMII	CTCAG	4 cut(s)	21, 141, 720, 1014
BseNI	ACTGG	1 cut(s)	1041
BseRI	GAGGAG	3 cut(s)	474, 1031, 1169
BseSI	GKGCMC	1 cut(s)	401
BseXI	GCAGC	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	1247
BshFI	GGCC	2 cut(s)	1041, 1259
BshNI	GGYRCC	1 cut(s)	1091
BsiHKAI	GWGCWC	1 cut(s)	1131
BsiHKCI	CYCGRG	3 cut(s)	968, 977, 1124
BsiSI	CCGG	2 cut(s)	941, 1042
BslFI	GGGAC	1 cut(s)	695
BslI	CCNNNNNNNGG	1 cut(s)	902
BsmFI	GGGAC	1 cut(s)	695
BsmI	GAATGC	1 cut(s)	1064
BsnI	GGCC	2 cut(s)	1041, 1259
BsoBI	CYCGRG	3 cut(s)	968, 977, 1124
Bsp1286I	GDGCHC	3 cut(s)	401, 792, 1131
Bsp143I	GATC	2 cut(s)	745, 813
Bsp19I	CCATGG	2 cut(s)	165, 630
BspACI	CCGC	3 cut(s)	380, 893, 951
BspANI	GGCC	2 cut(s)	1041, 1259
BspCNI	CTCAG	4 cut(s)	22, 142, 719, 1013
BspFNI	CGCG	1 cut(s)	1247
BspLI	GGNNCC	4 cut(s)	27, 378, 815, 1093
BspPI	GGATC	3 cut(s)	740, 808, 821
BspT107I	GGYRCC	1 cut(s)	1091
BsrDI	GCAATG	2 cut(s)	458, 1200
BsrFI	RCCGGY	1 cut(s)	940
BsrI	ACTGG	1 cut(s)	1041
BssAI	RCCGGY	1 cut(s)	940
BssECI	CCNNGG	3 cut(s)	165, 630, 1014
BssMI	GATC	2 cut(s)	745, 813
BssNI	GRCGYC	1 cut(s)	1074
BssSI	CACGAG	1 cut(s)	805
BssT1I	CCWWGG	2 cut(s)	165, 630
Bst2BI	CACGAG	1 cut(s)	805
Bst4CI	ACNGT	5 cut(s)	422, 666, 785, 1103, 1216
Bst6I	CTCTTC	1 cut(s)	841
BstACI	GRCGYC	1 cut(s)	1074
BstC8I	GCNNGC	4 cut(s)	401, 942, 992, 1117
BstDEI	CTNAG	5 cut(s)	30, 150, 706, 936, 1000
BstDSI	CCRYGG	2 cut(s)	165, 630
BstF5I	GGATG	2 cut(s)	412, 1080
BstFNI	CGCG	1 cut(s)	1247
BstH2I	RGCGCY	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	2 cut(s)	748, 816
BstMBI	GATC	2 cut(s)	745, 813
BstMWI	GCNNNNNNNGC	4 cut(s)	950, 973, 982, 991
BstSLI	GKGCMC	1 cut(s)	401
BstUI	CGCG	1 cut(s)	1247
BstV1I	GCAGC	1 cut(s)	332
BstX2I	RGATCY	2 cut(s)	745, 813
BstYI	RGATCY	2 cut(s)	745, 813
BsuRI	GGCC	2 cut(s)	1041, 1259
BtgI	CCRYGG	2 cut(s)	165, 630
BtsCI	GGATG	2 cut(s)	412, 1080
BtsI	GCAGTG	1 cut(s)	1155
BtsIMutI	CAGTG	3 cut(s)	102, 1034, 1155
Cac8I	GCNNGC	4 cut(s)	401, 942, 992, 1117
CfoI	GCGC	1 cut(s)	445
Cfr10I	RCCGGY	1 cut(s)	940
Cfr13I	GGNCC	2 cut(s)	925, 1039
CseI	GACGC	2 cut(s)	1082, 1253
Csp6I	GTAC	3 cut(s)	12, 336, 667
CviAII	CATG	6 cut(s)	166, 223, 383, 631, 673, 1187
CviQI	GTAC	3 cut(s)	12, 336, 667
DdeI	CTNAG	5 cut(s)	30, 150, 706, 936, 1000
DpnI	GATC	2 cut(s)	747, 815
DpnII	GATC	2 cut(s)	745, 813
Eam1104I	CTCTTC	1 cut(s)	841
EarI	CTCTTC	1 cut(s)	841
EciI	GGCGGA	1 cut(s)	940
Ecl136II	GAGCTC	1 cut(s)	1129
Eco130I	CCWWGG	2 cut(s)	165, 630
Eco24I	GRGCYC	2 cut(s)	792, 1131
Eco47I	GGWCC	1 cut(s)	925
Eco53kI	GAGCTC	1 cut(s)	1129
Eco88I	CYCGRG	3 cut(s)	968, 977, 1124
EcoICRI	GAGCTC	1 cut(s)	1129
EcoO109I	RGGNCCY	1 cut(s)	925
EcoRI	GAATTC	1 cut(s)	1045
EcoT14I	CCWWGG	2 cut(s)	165, 630
EcoT38I	GRGCYC	2 cut(s)	792, 1131
ErhI	CCWWGG	2 cut(s)	165, 630
FaeI	CATG	6 cut(s)	169, 226, 386, 634, 676, 1190
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	6 cut(s)	165, 222, 382, 630, 672, 1186
FauNDI	CATATG	3 cut(s)	351, 372, 591
Fnu4HI	GCNGC	3 cut(s)	321, 380, 893
FokI	GGATG	2 cut(s)	399, 1067
FriOI	GRGCYC	2 cut(s)	792, 1131
Fsp4HI	GCNGC	3 cut(s)	321, 380, 893
FspBI	CTAG	3 cut(s)	57, 429, 794
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	3 cut(s)	321, 380, 893
HaeII	RGCGCY	1 cut(s)	446
HaeIII	GGCC	2 cut(s)	1041, 1259
HapII	CCGG	2 cut(s)	941, 1042
HgaI	GACGC	2 cut(s)	1082, 1253
HhaI	GCGC	1 cut(s)	445
Hin1I	GRCGYC	1 cut(s)	1074
Hin1II	CATG	6 cut(s)	169, 226, 386, 634, 676, 1190
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HincII	GTYRAC	3 cut(s)	175, 286, 1108
HindII	GTYRAC	3 cut(s)	175, 286, 1108
HinfI	GANTC	7 cut(s)	34, 183, 355, 453, 676, 1168, 1238
HpaII	CCGG	2 cut(s)	941, 1042
HphI	GGTGA	1 cut(s)	693
Hpy166II	GTNNAC	4 cut(s)	175, 286, 597, 1108
Hpy188I	TCNGA	7 cut(s)	151, 818, 850, 1051, 1173, 1237, 1243
Hpy188III	TCNNGA	7 cut(s)	187, 215, 450, 805, 970, 979, 1124
Hpy8I	GTNNAC	4 cut(s)	175, 286, 597, 1108
Hpy99I	CGWCG	4 cut(s)	1073, 1076, 1168, 1247
HpyAV	CCTTC	6 cut(s)	41, 456, 660, 690, 938, 1235
HpyCH4III	ACNGT	5 cut(s)	422, 666, 785, 1103, 1216
HpyCH4V	TGCA	6 cut(s)	320, 349, 463, 916, 1062, 1205
HpyF10VI	GCNNNNNNNGC	4 cut(s)	950, 973, 982, 991
HpyF3I	CTNAG	5 cut(s)	30, 150, 706, 936, 1000
Hsp92I	GRCGYC	1 cut(s)	1074
Hsp92II	CATG	6 cut(s)	169, 226, 386, 634, 676, 1190
HspAI	GCGC	1 cut(s)	443
KroI	GCCGGC	1 cut(s)	940
KroNI	GCCGGC	1 cut(s)	942
Kzo9I	GATC	2 cut(s)	745, 813
LmnI	GCTCC	5 cut(s)	25, 376, 802, 1134, 1165
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	1 cut(s)	972
MaeI	CTAG	3 cut(s)	57, 429, 794
MaeIII	GTNAC	3 cut(s)	506, 699, 779
MalI	GATC	2 cut(s)	747, 815
MboI	GATC	2 cut(s)	745, 813
MboII	GAAGA	7 cut(s)	82, 753, 822, 828, 831, 876, 878
MfeI	CAATTG	2 cut(s)	289, 1206
MflI	RGATCY	2 cut(s)	745, 813
MhlI	GDGCHC	3 cut(s)	401, 792, 1131
MmeI	TCCRAC	2 cut(s)	523, 713
MroNI	GCCGGC	1 cut(s)	940
MspI	CCGG	2 cut(s)	941, 1042
MunI	CAATTG	2 cut(s)	289, 1206
Mva1269I	GAATGC	1 cut(s)	1064
MvnI	CGCG	1 cut(s)	1247
MwoI	GCNNNNNNNGC	4 cut(s)	950, 973, 982, 991
NaeI	GCCGGC	1 cut(s)	942
NcoI	CCATGG	2 cut(s)	165, 630
NdeI	CATATG	3 cut(s)	351, 372, 591
NdeII	GATC	2 cut(s)	745, 813
NgoMIV	GCCGGC	1 cut(s)	940
NlaIII	CATG	6 cut(s)	169, 226, 386, 634, 676, 1190
NlaIV	GGNNCC	4 cut(s)	27, 378, 815, 1093
NmuCI	GTSAC	1 cut(s)	699
PaeR7I	CTCGAG	1 cut(s)	977
PcsI	WCGNNNNNNNCGW	1 cut(s)	975
PctI	GAATGC	1 cut(s)	1064
PdiI	GCCGGC	1 cut(s)	942
PfeI	GAWTC	7 cut(s)	34, 183, 355, 453, 676, 1168, 1238
PkrI	GCNGC	3 cut(s)	322, 381, 894
PpuMI	RGGWCCY	1 cut(s)	925
Psp124BI	GAGCTC	1 cut(s)	1131
Psp5II	RGGWCCY	1 cut(s)	925
PspN4I	GGNNCC	4 cut(s)	27, 378, 815, 1093
PspPI	GGNCC	2 cut(s)	925, 1039
PspPPI	RGGWCCY	1 cut(s)	925
PsuI	RGATCY	2 cut(s)	745, 813
RsaI	GTAC	3 cut(s)	13, 337, 668
RsaNI	GTAC	3 cut(s)	12, 336, 667
SacI	GAGCTC	1 cut(s)	1131
SatI	GCNGC	3 cut(s)	321, 380, 893
Sau3AI	GATC	2 cut(s)	745, 813
Sau96I	GGNCC	2 cut(s)	925, 1039
SduI	GDGCHC	3 cut(s)	401, 792, 1131
SfaNI	GCATC	1 cut(s)	972
Sfr274I	CTCGAG	1 cut(s)	977
SinI	GGWCC	1 cut(s)	925
SlaI	CTCGAG	1 cut(s)	977
SmlI	CTYRAG	2 cut(s)	215, 977
SmoI	CTYRAG	2 cut(s)	215, 977
SsiI	CCGC	3 cut(s)	380, 893, 951
SspI	AATATT	1 cut(s)	308
SspMI	CTAG	3 cut(s)	57, 429, 794
SstI	GAGCTC	1 cut(s)	1131
StyI	CCWWGG	2 cut(s)	165, 630
TaaI	ACNGT	5 cut(s)	422, 666, 785, 1103, 1216
TaqI	TCGA	5 cut(s)	636, 960, 978, 1008, 1166
TauI	GCSGC	2 cut(s)	382, 895
TfiI	GAWTC	7 cut(s)	34, 183, 355, 453, 676, 1168, 1238
TscAI	CASTG	3 cut(s)	109, 1041, 1162
TseFI	GTSAC	1 cut(s)	699
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	699
TspDTI	ATGAA	4 cut(s)	111, 368, 689, 831
TspGWI	ACGGA	3 cut(s)	59, 195, 1152
TspRI	CASTG	3 cut(s)	109, 1041, 1162
VpaK11BI	GGWCC	1 cut(s)	925
XapI	RAATTY	1 cut(s)	1045
XhoI	CTCGAG	1 cut(s)	977
XspI	CTAG	3 cut(s)	57, 429, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.