Rroxscaffold_4G00291010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003456
Physical Location & Seq
Forward (+)
11443690 .. 11444884
1195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00291010.1

Sequence Viewer

Length: 663 bp
ATGTCAATTCTAGGCTTGGATCCTGGAGATCCTAACAACCGGTATCGAGTCCGCAACGGGCTCATTTCGGTGAGCCGGCGGTGCACGGCGGTGGGATCTCCGGCACTTGTTACAACACGCATTCGTCTCACCCTCACGGTAGCCCTAACTACCCACCACCTCCTTCCCAATTCCCATTGCAGCCAAGCTACCCACCTCGTCCTCGGTTTCGATTCCAACCGAATTACTCACCACCACCACCACCTTCCCAAACAATCATTAATGGCTTTGTCCTCCCTCATCGACAAGCTCAAGATGCTTTGCCGGCCTCCCTCCGTCATCGGCACCGAGGAAGTCGGCCTTGCCTCACCGGGTGGGAATCCCGATGAGGAATGCGACGCGACAATGCTTGTCGTCCCCAAAGGCACCGCTAACGGCGCCAACCTCGCCGGACTCCCGAGCTTTACCCCAAATTCTGGTATGGGTTTTGTGTTTGGTGCTAATGGTATTGATGAGAAATTGGAGAATAGGGAGAGTGTCGAGAAGAGGGCCGAGGTAAATAGTAGAGATGGTAGAGAGTTCGGTGAGTCCGAGAGTGTCGGTGCTAAGCGGGACGAGGGTGAAGATAAGGAGCAGCTTAGCAATGGAATGTCGAGAATTTCATGCCCTCCAACTGTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

23.65

Weight (kDa)

6.75

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 323, 404, 416
AccB7I CCANNNNNTGG 1 cut(s) 455
AccII CGCG 1 cut(s) 380
AciI CCGC 5 cut(s) 52, 79, 89, 408, 589
AclWI GGATC 4 cut(s) 14, 23, 27, 103
AcsI RAATTY 2 cut(s) 451, 636
AcyI GRCGYC 1 cut(s) 417
AdeI CACNNNGTG 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 455
AgeI ACCGGT 1 cut(s) 39
AjnI CCWGG 1 cut(s) 22
AleI CACNNNNGTG 1 cut(s) 89
AluBI AGCT 4 cut(s) 188, 289, 441, 616
AluI AGCT 4 cut(s) 188, 289, 441, 616
Alw21I GWGCWC 1 cut(s) 86
Alw26I GTCTC 1 cut(s) 131
Alw44I GTGCAC 1 cut(s) 82
AlwI GGATC 4 cut(s) 14, 23, 27, 103
Ama87I CYCGRG 1 cut(s) 436
AoxI GGCC 3 cut(s) 305, 337, 528
ApaLI GTGCAC 1 cut(s) 82
ApeKI GCWGC 2 cut(s) 180, 613
ApoI RAATTY 2 cut(s) 451, 636
AseI ATTAAT 1 cut(s) 260
AsiGI ACCGGT 1 cut(s) 39
AspLEI GCGC 1 cut(s) 419
AspS9I GGNCC 1 cut(s) 528
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 6 cut(s) 82, 121, 221, 339, 575, 611
AvaI CYCGRG 1 cut(s) 436
BaeGI GKGCMC 1 cut(s) 86
BamHI GGATCC 1 cut(s) 19
BanI GGYRCC 3 cut(s) 323, 404, 416
BanII GRGCYC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 86
BbvI GCAGC 2 cut(s) 192, 625
BccI CCATC 1 cut(s) 542
BceAI ACGGC 2 cut(s) 102, 430
BciT130I CCWGG 1 cut(s) 24
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 11
BfoI RGCGCY 1 cut(s) 420
BisI GCNGC 2 cut(s) 181, 614
BlpI GCTNAGC 2 cut(s) 585, 617
BlsI GCNGC 2 cut(s) 182, 615
Bme1390I CCNGG 2 cut(s) 24, 351
BmeT110I CYCGRG 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 528
BmiI GGNNCC 4 cut(s) 21, 325, 406, 418
BmrFI CCNGG 2 cut(s) 24, 351
BmsI GCATC 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 45
Bpu1102I GCTNAGC 2 cut(s) 585, 617
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 351
BsaHI GRCGYC 1 cut(s) 417
BsaJI CCNNGG 3 cut(s) 202, 327, 531
BsaWI WCCGGW 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 455
Bse118I RCCGGY 3 cut(s) 39, 75, 303
Bse3DI GCAATG 2 cut(s) 175, 628
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 202, 327, 531
BseLI CCNNNNNNNGG 1 cut(s) 455
BseMI GCAATG 2 cut(s) 175, 628
BseSI GKGCMC 1 cut(s) 86
BseXI GCAGC 2 cut(s) 192, 625
Bsh1236I CGCG 1 cut(s) 380
BshFI GGCC 3 cut(s) 307, 339, 530
BshNI GGYRCC 3 cut(s) 323, 404, 416
BshTI ACCGGT 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 86
BsiHKCI CYCGRG 1 cut(s) 436
BsiSI CCGG 6 cut(s) 40, 76, 101, 304, 350, 429
BslFI GGGAC 2 cut(s) 380, 605
BslI CCNNNNNNNGG 1 cut(s) 455
BsmAI GTCTC 1 cut(s) 131
BsmBI CGTCTC 1 cut(s) 131
BsmFI GGGAC 2 cut(s) 380, 605
BsmI GAATGC 2 cut(s) 120, 377
BsnI GGCC 3 cut(s) 307, 339, 530
BsoBI CYCGRG 1 cut(s) 436
Bsp1286I GDGCHC 2 cut(s) 63, 86
Bsp143I GATC 3 cut(s) 19, 28, 95
Bsp1720I GCTNAGC 2 cut(s) 585, 617
BspACI CCGC 5 cut(s) 52, 79, 89, 408, 589
BspANI GGCC 3 cut(s) 307, 339, 530
BspFNI CGCG 1 cut(s) 380
BspLI GGNNCC 4 cut(s) 21, 325, 406, 418
BspPI GGATC 4 cut(s) 14, 23, 27, 103
BspT107I GGYRCC 3 cut(s) 323, 404, 416
BsrDI GCAATG 2 cut(s) 175, 628
BsrFI RCCGGY 3 cut(s) 39, 75, 303
BssAI RCCGGY 3 cut(s) 39, 75, 303
BssECI CCNNGG 3 cut(s) 202, 327, 531
BssMI GATC 3 cut(s) 19, 28, 95
BssNI GRCGYC 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 139, 655
Bst6I CTCTTC 1 cut(s) 518
BstACI GRCGYC 1 cut(s) 417
BstC8I GCNNGC 2 cut(s) 77, 305
BstDEI CTNAG 2 cut(s) 585, 617
BstFNI CGCG 1 cut(s) 380
BstH2I RGCGCY 1 cut(s) 420
BstHHI GCGC 1 cut(s) 419
BstKTI GATC 3 cut(s) 22, 31, 98
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 3 cut(s) 19, 28, 95
BstMWI GCNNNNNNNGC 5 cut(s) 81, 295, 304, 416, 425
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 2 cut(s) 22, 349
BstSLI GKGCMC 1 cut(s) 86
BstUI CGCG 1 cut(s) 380
BstV1I GCAGC 2 cut(s) 192, 625
BstX2I RGATCY 3 cut(s) 19, 28, 95
BstYI RGATCY 3 cut(s) 19, 28, 95
BsuRI GGCC 3 cut(s) 307, 339, 530
Cac8I GCNNGC 2 cut(s) 77, 305
CfoI GCGC 1 cut(s) 419
Cfr10I RCCGGY 3 cut(s) 39, 75, 303
Cfr13I GGNCC 1 cut(s) 528
CseI GACGC 1 cut(s) 386
CspAI ACCGGT 1 cut(s) 39
CviAII CATG 1 cut(s) 642
DdeI CTNAG 2 cut(s) 585, 617
DinI GGCGCC 1 cut(s) 418
DpnI GATC 3 cut(s) 21, 30, 97
DpnII GATC 3 cut(s) 19, 28, 95
DraIII CACNNNGTG 1 cut(s) 353
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
Eco24I GRGCYC 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 22
EcoT38I GRGCYC 1 cut(s) 63
EgeI GGCGCC 1 cut(s) 418
EheI GGCGCC 1 cut(s) 418
Esp3I CGTCTC 1 cut(s) 131
FaeI CATG 1 cut(s) 645
FaiI YATR 2 cut(s) 461, 643
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FaqI GGGAC 2 cut(s) 380, 605
FatI CATG 1 cut(s) 641
FauI CCCGC 1 cut(s) 582
Fnu4HI GCNGC 2 cut(s) 181, 614
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 181, 614
FspBI CTAG 1 cut(s) 11
GlaI GCGC 1 cut(s) 418
GluI GCNGC 2 cut(s) 181, 614
GsuI CTGGAG 1 cut(s) 45
HaeII RGCGCY 1 cut(s) 420
HaeIII GGCC 3 cut(s) 307, 339, 530
HapII CCGG 6 cut(s) 40, 76, 101, 304, 350, 429
HgaI GACGC 1 cut(s) 386
HhaI GCGC 1 cut(s) 419
Hin1I GRCGYC 1 cut(s) 417
Hin1II CATG 1 cut(s) 645
Hin6I GCGC 1 cut(s) 417
HinP1I GCGC 1 cut(s) 417
HinfI GANTC 5 cut(s) 48, 212, 358, 432, 566
HpaII CCGG 6 cut(s) 40, 76, 101, 304, 350, 429
HphI GGTGA 6 cut(s) 82, 121, 221, 339, 575, 611
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 571
Hpy188III TCNNGA 5 cut(s) 292, 362, 436, 520, 633
Hpy8I GTNNAC 1 cut(s) 84
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 2 cut(s) 173, 254
HpyCH4III ACNGT 2 cut(s) 139, 655
HpyCH4V TGCA 2 cut(s) 84, 180
HpyF10VI GCNNNNNNNGC 5 cut(s) 81, 295, 304, 416, 425
HpyF3I CTNAG 2 cut(s) 585, 617
Hsp92I GRCGYC 1 cut(s) 417
Hsp92II CATG 1 cut(s) 645
HspAI GCGC 1 cut(s) 417
KasI GGCGCC 1 cut(s) 416
KroI GCCGGC 2 cut(s) 75, 303
KroNI GCCGGC 2 cut(s) 77, 305
Kzo9I GATC 3 cut(s) 19, 28, 95
LmnI GCTCC 1 cut(s) 610
LpnPI CCDG 9 cut(s) 9, 36, 53, 89, 114, 317, 363, 441, 442
Lsp1109I GCAGC 2 cut(s) 192, 625
LweI GCATC 1 cut(s) 285
MaeI CTAG 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 109
MalI GATC 3 cut(s) 21, 30, 97
MboI GATC 3 cut(s) 19, 28, 95
MboII GAAGA 2 cut(s) 535, 614
MflI RGATCY 3 cut(s) 19, 28, 95
MhlI GDGCHC 2 cut(s) 63, 86
MluCI AATT 6 cut(s) 6, 169, 222, 451, 497, 636
Mly113I GGCGCC 1 cut(s) 417
MlyI GAGTC 3 cut(s) 57, 426, 575
MmeI TCCRAC 1 cut(s) 240
MroNI GCCGGC 2 cut(s) 75, 303
MseI TTAA 1 cut(s) 260
MslI CAYNNNNRTG 2 cut(s) 68, 89
MspI CCGG 6 cut(s) 40, 76, 101, 304, 350, 429
MspR9I CCNGG 2 cut(s) 24, 351
Mva1269I GAATGC 2 cut(s) 120, 377
MvaI CCWGG 1 cut(s) 24
MvnI CGCG 1 cut(s) 380
MwoI GCNNNNNNNGC 5 cut(s) 81, 295, 304, 416, 425
NaeI GCCGGC 2 cut(s) 77, 305
NarI GGCGCC 1 cut(s) 417
NciI CCSGG 1 cut(s) 351
NdeII GATC 3 cut(s) 19, 28, 95
NgoMIV GCCGGC 2 cut(s) 75, 303
NlaIII CATG 1 cut(s) 645
NlaIV GGNNCC 4 cut(s) 21, 325, 406, 418
NmeAIII GCCGAG 1 cut(s) 556
OliI CACNNNNGTG 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 567
PctI GAATGC 2 cut(s) 120, 377
PdiI GCCGGC 2 cut(s) 77, 305
PfeI GAWTC 2 cut(s) 212, 358
PflMI CCANNNNNTGG 1 cut(s) 455
PfoI TCCNGGA 1 cut(s) 22
PinAI ACCGGT 1 cut(s) 39
PkrI GCNGC 2 cut(s) 182, 615
PleI GAGTC 3 cut(s) 56, 426, 574
PluTI GGCGCC 1 cut(s) 420
PpsI GAGTC 3 cut(s) 56, 426, 574
PshBI ATTAAT 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 4 cut(s) 21, 325, 406, 418
PspPI GGNCC 1 cut(s) 528
PsuI RGATCY 3 cut(s) 19, 28, 95
RseI CAYNNNNRTG 2 cut(s) 68, 89
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 2 cut(s) 181, 614
Sau3AI GATC 3 cut(s) 19, 28, 95
Sau96I GGNCC 1 cut(s) 528
SchI GAGTC 3 cut(s) 57, 426, 575
ScrFI CCNGG 2 cut(s) 24, 351
SduI GDGCHC 2 cut(s) 63, 86
SetI ASST 9 cut(s) 162, 190, 198, 246, 291, 426, 443, 537, 618
SfaNI GCATC 1 cut(s) 285
SfoI GGCGCC 1 cut(s) 418
SmiMI CAYNNNNRTG 2 cut(s) 68, 89
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 6 cut(s) 6, 169, 222, 451, 497, 636
SsiI CCGC 5 cut(s) 52, 79, 89, 408, 589
SspDI GGCGCC 1 cut(s) 416
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 2 cut(s) 22, 349
TaaI ACNGT 2 cut(s) 139, 655
TaqI TCGA 6 cut(s) 46, 210, 282, 519, 632, 658
TasI AATT 6 cut(s) 6, 169, 222, 451, 497, 636
TfiI GAWTC 2 cut(s) 212, 358
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TseI GCWGC 2 cut(s) 180, 613
TspDTI ATGAA 1 cut(s) 630
TspGWI ACGGA 1 cut(s) 304
Van91I CCANNNNNTGG 1 cut(s) 455
VneI GTGCAC 1 cut(s) 82
VspI ATTAAT 1 cut(s) 260
XapI RAATTY 2 cut(s) 451, 636
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.