Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004695.1

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Reverse (-)

37513 .. 40865

Gene Structure 3353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004695.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2673 bp

atggtcgaaccagagtttccttcgtttcaaccacagtacgccatgaatccttcaattctaacctttcagtcaccctcagtccccacttttgttcaaccccaaccccaatttacagatcccatacctcaatcttctaattgttcaatgggtaactgtgagcccctagctccaatcatgagtaagatccgaaccatatcctcttcctcttcttcattatctgacccacaaacccacgaagatacaataaacctatcttctctgccgccactttcgggtgtttcggtgcaacaggaggtccttcgctctaagccggctttctccgcccttatcgacaagctcgggaagctcgagatgctttgccagcctccctcagtcatcgacaccgaggaggtcagccttgcctcactgggccggaattccgatgaggaatgcaaaagcgacgacgccatcatccccaaaggcaccattaacggtgtcaacctcgccaacactcccgagctccaccccgaactcgtcagcctcaacactgttccgtcgattctaaacctcctcagccatgacagcaccgacattgcaattgacaccgttcagttccttcgattgtctgattccgacgcgagtgagatggccatcgtctacaatactcttgcgacgattgagaatttgaaagagtttgaaccggcagtagcggagtttgtgtgcgaaaggatcaaattgctggagtggttgatgagaaagattaagatgaaggagtttgatactctgaatgtgtacaaggagatgaaagagaagggagtgaagttaaatgttgttctcggtatgccccccaggatggcctttgagaagcttcaattaatggggtttccatttctgagacctgaggattactatgcaaaaatggtgaagtcggagtcccaattggggaaagtgaagagccaatttttggtggaaatgactaccaatcggagtcaaacctcatcgtttcagttgcccagccttggaaggtatgatgatagtcatgctaaagtttcgtctaccattttgaatgatgaaaattatatgtttgtgactggtgtgaatctatgcactgctttagtttttaagtattgtccaattggtatagttgaggtaccaaagaagtggtttttggatgcgacaagtatgaattctcatatcatagaagtgatgagttttgcttttgagttgctaatgcatcaacacatgtggttacgttgcatctcaagtcgtcttgtccacattgcttctgtaacagagtcttgctcaggaaattctgaaattccatttggcacttactatcttataaaacctaatgaacttttcatcatagctgtgtatctctgctgccaattgaagacacaacgcattgatgatgtagccaacaatcttattacacaagctgcattcaatgacaaattggacattttccagtcaagttatttaagtggaggtattgtagtctcctctgatatgcgtgatttggatgatagtgctttcaatgataatgctgggaatttgcttcctgatgacacatttgggaaaatggtaaggaatgccaatttgtttcatgaatatatgaacatgcttgcgaaaatgcttttcaggagtggtagtaaggagcgggtgaattcaaatgttagtatagtggatacaattgttgctgcattatgtggagagagcatcaagatggatgagcaatttggaacaatgattgttgctgctatcgacaaggctggacaaaaagctaagaaaaaacaagtggaggatattattgttgttggtatgactgccaaattgaatactgtgagtaatagcatgggcattagtatgggtaatagggagcctgagattcaaagcacggaaggggtgtctagtgtgatgtggaagaataatgctcaatcacatcatttccatcacactgactttggtaatggatcatctgttgggaacttacttctctattctgaggttcttacttccatggaagttgacaacggattcttgaatggtaattttctatttttacctcttgagaacatgagtttgcttcttgctgataagtgggagataatggacaaaattgtgaaaatgatgtttgttgacaattgggagagatggaaatatttagtaattgcagcaaataagaatggtactaaagagttgcatatgaatttctttgaaaaccatatggagccgcatgggaagtgttcggggtatgctatgttaggtgttatagttgttgtgcctaccttggatgttcttcatataatgcagaagttgggattcaaacccaattatcacaatttccttcggttattctcaacttatgttagtgtgttcgttgtgagagaagtatttacaagtttgaagttgttgcaaaatgagtatcaatataattcagtagatgtcaaggttgttgttgcaagtggatctgtcacaataacaaaagagaagcaactcaaagctatggtaattgacactagcttgggtaatgacttggatgatgaagcagggagactagctcagctcggtattgaggttgacaggtacatcaatgttcaacctttaataggtattgctaagatcactggtatgagccatcgaattccacagtacaatgtctcttgtggaagttggaagacatttcaggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CTNNBL

Protein Analysis

890

Amino Acids

99.47

Weight (kDa)

5.42

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1322
Acc65I	GGTACC	1 cut(s)	1129
AccB1I	GGYRCC	2 cut(s)	461, 1129
AccB7I	CCANNNNNTGG	1 cut(s)	943
AccBSI	CCGCTC	1 cut(s)	1639
AccI	GTMKAC	2 cut(s)	636, 1034
AccII	CGCG	1 cut(s)	617
AciI	CCGC	5 cut(s)	263, 321, 689, 1639, 2213
AclWI	GGATC	5 cut(s)	110, 178, 716, 1960, 2455
AcoI	YGGCCR	1 cut(s)	627
AcsI	RAATTY	9 cut(s)	415, 661, 1165, 1288, 1296, 1531, 1645, 2188, 2622
AcyI	GRCGYC	1 cut(s)	444
AfaI	GTAC	6 cut(s)	38, 773, 1131, 2170, 2567, 2633
AfiI	CCNNNNNNNGG	6 cut(s)	272, 832, 921, 943, 998, 2588
AflIII	ACRYGT	1 cut(s)	1221
AjnI	CCWGG	1 cut(s)	827
AjuI	GAANNNNNNNTTGG	4 cut(s)	1130, 1162, 1287, 1319
Alw21I	GWGCWC	1 cut(s)	501
Alw26I	GTCTC	4 cut(s)	868, 1483, 2527, 2644
AlwI	GGATC	5 cut(s)	110, 178, 716, 1960, 2455
Ama87I	CYCGRG	3 cut(s)	338, 347, 494
AoxI	GGCC	3 cut(s)	409, 627, 834
ApeKI	GCWGC	5 cut(s)	1362, 1418, 1679, 1736, 2153
ApoI	RAATTY	9 cut(s)	415, 661, 1165, 1288, 1296, 1531, 1645, 2188, 2622
AseI	ATTAAT	1 cut(s)	854
Asp718I	GGTACC	1 cut(s)	1129
AspS9I	GGNCC	2 cut(s)	295, 409
AsuHPI	GGTGA	3 cut(s)	63, 913, 1654
AvaI	CYCGRG	3 cut(s)	338, 347, 494
AvaII	GGWCC	1 cut(s)	295
AxyI	CCTNAGG	1 cut(s)	879
BaeI	ACNNNNGTAYC	2 cut(s)	1659, 1692
BalI	TGGCCA	1 cut(s)	629
BanI	GGYRCC	2 cut(s)	461, 1129
BanII	GRGCYC	2 cut(s)	162, 501
BbsI	GAAGAC	2 cut(s)	1379, 2663
Bbv12I	GWGCWC	1 cut(s)	501
BbvCI	CCTCAGC	1 cut(s)	551
BbvI	GCAGC	5 cut(s)	1349, 1405, 1666, 1723, 2165
BccI	CCATC	8 cut(s)	455, 619, 638, 826, 1699, 1938, 2127, 2625
BciT130I	CCWGG	1 cut(s)	829
BciVI	GTATCC	1 cut(s)	1660
BcoDI	GTCTC	4 cut(s)	868, 1483, 2527, 2644
BfaI	CTAG	4 cut(s)	164, 1890, 2499, 2537
BfuI	GTATCC	1 cut(s)	1660
BisI	GCNGC	7 cut(s)	263, 1363, 1419, 1680, 1737, 2154, 2213
BlpI	GCTNAGC	1 cut(s)	2541
BlsI	GCNGC	7 cut(s)	264, 1364, 1420, 1681, 1738, 2155, 2214
Bme1390I	CCNGG	1 cut(s)	829
Bme18I	GGWCC	1 cut(s)	295
BmeT110I	CYCGRG	3 cut(s)	338, 347, 494
BmgT120I	GGNCC	2 cut(s)	295, 409
BmiI	GGNNCC	4 cut(s)	463, 1131, 1860, 2211
BmrFI	CCNGG	1 cut(s)	829
BmrI	ACTGGG	1 cut(s)	416
BmsI	GCATC	5 cut(s)	342, 1141, 1222, 1245, 1707
BmuI	ACTGGG	1 cut(s)	416
BpiI	GAAGAC	2 cut(s)	1379, 2663
BplI	GAGNNNNNCTC	4 cut(s)	1265, 1297, 2524, 2556
BpmI	CTGGAG	1 cut(s)	740
Bpu10I	CCTNAGC	2 cut(s)	551, 1282
Bpu1102I	GCTNAGC	1 cut(s)	2541
BpuEI	CTTGAG	2 cut(s)	1225, 2069
BsaBI	GATNNNNATC	1 cut(s)	629
BsaHI	GRCGYC	1 cut(s)	444
BsaI	GGTCTC	1 cut(s)	868
BsaJI	CCNNGG	5 cut(s)	384, 827, 997, 1998, 2268
BsaXI	ACNNNNNCTCC	6 cut(s)	683, 713, 1458, 1488, 1615, 1645
Bsc4I	CCNNNNNNNGG	6 cut(s)	272, 832, 921, 943, 998, 2588
Bse118I	RCCGGY	2 cut(s)	310, 679
Bse1I	ACTGG	4 cut(s)	411, 1075, 1447, 2611
Bse21I	CCTNAGG	1 cut(s)	879
Bse3DI	GCAATG	2 cut(s)	570, 1257
Bse8I	GATNNNNATC	1 cut(s)	629
BseBI	CCWGG	1 cut(s)	829
BseDI	CCNNGG	5 cut(s)	384, 827, 997, 1998, 2268
BseGI	GGATG	7 cut(s)	450, 837, 1156, 1507, 1714, 2278, 2524
BseJI	GATNNNNATC	1 cut(s)	629
BseLI	CCNNNNNNNGG	6 cut(s)	272, 832, 921, 943, 998, 2588
BseMI	GCAATG	2 cut(s)	570, 1257
BseMII	CTCAG	9 cut(s)	90, 384, 565, 863, 870, 1296, 1854, 1974, 2555
BseNI	ACTGG	4 cut(s)	411, 1075, 1447, 2611
BseRI	GAGGAG	3 cut(s)	401, 539, 1471
BseXI	GCAGC	5 cut(s)	1349, 1405, 1666, 1723, 2165
BseYI	CCCAGC	2 cut(s)	992, 1526
Bsh1236I	CGCG	1 cut(s)	617
BshFI	GGCC	3 cut(s)	411, 629, 836
BshNI	GGYRCC	2 cut(s)	461, 1129
BsiHKAI	GWGCWC	1 cut(s)	501
BsiHKCI	CYCGRG	3 cut(s)	338, 347, 494
BsiSI	CCGG	3 cut(s)	311, 412, 680
BslFI	GGGAC	2 cut(s)	65, 898
BslI	CCNNNNNNNGG	6 cut(s)	272, 832, 921, 943, 998, 2588
BsmAI	GTCTC	4 cut(s)	868, 1483, 2527, 2644
BsmFI	GGGAC	2 cut(s)	65, 898
BsmI	GAATGC	3 cut(s)	434, 1421, 1576
BsnI	GGCC	3 cut(s)	411, 629, 836
Bso31I	GGTCTC	1 cut(s)	868
BsoBI	CYCGRG	3 cut(s)	338, 347, 494
Bsp1286I	GDGCHC	2 cut(s)	162, 501
Bsp1407I	TGTACA	1 cut(s)	771
Bsp143I	GATC	6 cut(s)	115, 183, 708, 1952, 2447, 2601
Bsp1720I	GCTNAGC	1 cut(s)	2541
Bsp19I	CCATGG	1 cut(s)	1998
BspACI	CCGC	5 cut(s)	263, 321, 689, 1639, 2213
BspANI	GGCC	3 cut(s)	411, 629, 836
BspCNI	CTCAG	9 cut(s)	89, 383, 564, 864, 871, 1295, 1855, 1975, 2554
BspFNI	CGCG	1 cut(s)	617
BspHI	TCATGA	2 cut(s)	174, 1585
BspLI	GGNNCC	4 cut(s)	463, 1131, 1860, 2211
BspPI	GGATC	5 cut(s)	110, 178, 716, 1960, 2455
BspQI	GCTCTTC	1 cut(s)	926
BspT107I	GGYRCC	2 cut(s)	461, 1129
BspTNI	GGTCTC	1 cut(s)	868
BsrBI	CCGCTC	1 cut(s)	1639
BsrDI	GCAATG	2 cut(s)	570, 1257
BsrFI	RCCGGY	2 cut(s)	310, 679
BsrGI	TGTACA	1 cut(s)	771
BsrI	ACTGG	4 cut(s)	411, 1075, 1447, 2611
BssAI	RCCGGY	2 cut(s)	310, 679
BssECI	CCNNGG	5 cut(s)	384, 827, 997, 1998, 2268
BssMI	GATC	6 cut(s)	115, 183, 708, 1952, 2447, 2601
BssNI	GRCGYC	1 cut(s)	444
BssT1I	CCWWGG	3 cut(s)	997, 1998, 2268
Bst2UI	CCWGG	1 cut(s)	829
Bst4CI	ACNGT	7 cut(s)	36, 155, 473, 529, 586, 1822, 2631
Bst6I	CTCTTC	3 cut(s)	205, 211, 926
BstACI	GRCGYC	1 cut(s)	444
BstAUI	TGTACA	1 cut(s)	771
BstC8I	GCNNGC	3 cut(s)	312, 362, 1605
BstDSI	CCRYGG	1 cut(s)	1998
BstENI	CCTNNNNNAGG	1 cut(s)	2586
BstF5I	GGATG	7 cut(s)	450, 837, 1156, 1507, 1714, 2278, 2524
BstFNI	CGCG	1 cut(s)	617
BstKTI	GATC	6 cut(s)	118, 186, 711, 1955, 2450, 2604
BstMAI	GTCTC	4 cut(s)	868, 1483, 2527, 2644
BstMBI	GATC	6 cut(s)	115, 183, 708, 1952, 2447, 2601
BstMWI	GCNNNNNNNGC	5 cut(s)	320, 343, 352, 361, 561
BstNI	CCWGG	1 cut(s)	829
BstNSI	RCATGY	2 cut(s)	1225, 1603
BstSCI	CCNGG	1 cut(s)	827
BstUI	CGCG	1 cut(s)	617
BstV1I	GCAGC	5 cut(s)	1349, 1405, 1666, 1723, 2165
BstV2I	GAAGAC	2 cut(s)	1379, 2663
BstX2I	RGATCY	3 cut(s)	115, 183, 2447
BstXI	CCANNNNNNTGG	1 cut(s)	1140
BstYI	RGATCY	3 cut(s)	115, 183, 2447
Bsu36I	CCTNAGG	1 cut(s)	879
BsuI	GTATCC	1 cut(s)	1660
BsuRI	GGCC	3 cut(s)	411, 629, 836
BtgI	CCRYGG	1 cut(s)	1998
BtsCI	GGATG	7 cut(s)	450, 837, 1156, 1507, 1714, 2278, 2524
BtsI	GCAGTG	1 cut(s)	1086
BtsIMutI	CAGTG	5 cut(s)	404, 525, 1086, 1935, 2604
Cac8I	GCNNGC	3 cut(s)	312, 362, 1605
CciI	TCATGA	2 cut(s)	174, 1585
Cfr10I	RCCGGY	2 cut(s)	310, 679
Cfr13I	GGNCC	2 cut(s)	295, 409
CseI	GACGC	2 cut(s)	452, 623
Csp6I	GTAC	6 cut(s)	37, 772, 1130, 2169, 2566, 2632
CspCI	CAANNNNNGTGG	2 cut(s)	1205, 1240
CviQI	GTAC	6 cut(s)	37, 772, 1130, 2169, 2566, 2632
DpnI	GATC	6 cut(s)	117, 185, 710, 1954, 2449, 2603
DpnII	GATC	6 cut(s)	115, 183, 708, 1952, 2447, 2601
EaeI	YGGCCR	1 cut(s)	627
Eam1104I	CTCTTC	3 cut(s)	205, 211, 926
EarI	CTCTTC	3 cut(s)	205, 211, 926
EciI	GGCGGA	1 cut(s)	310
Ecl136II	GAGCTC	1 cut(s)	499
Eco130I	CCWWGG	3 cut(s)	997, 1998, 2268
Eco24I	GRGCYC	2 cut(s)	162, 501
Eco31I	GGTCTC	1 cut(s)	868
Eco47I	GGWCC	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	499
Eco81I	CCTNAGG	1 cut(s)	879
Eco88I	CYCGRG	3 cut(s)	338, 347, 494
EcoICRI	GAGCTC	1 cut(s)	499
EcoNI	CCTNNNNNAGG	1 cut(s)	2586
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRI	GAATTC	4 cut(s)	415, 1165, 1645, 2622
EcoRII	CCWGG	1 cut(s)	827
EcoT14I	CCWWGG	3 cut(s)	997, 1998, 2268
EcoT22I	ATGCAT	1 cut(s)	1215
EcoT38I	GRGCYC	2 cut(s)	162, 501
ErhI	CCWWGG	3 cut(s)	997, 1998, 2268
FaqI	GGGAC	2 cut(s)	65, 898
FauI	CCCGC	1 cut(s)	1632
FauNDI	CATATG	2 cut(s)	2184, 2205
FblI	GTMKAC	2 cut(s)	636, 1034
Fnu4HI	GCNGC	7 cut(s)	263, 1363, 1419, 1680, 1737, 2154, 2213
FokI	GGATG	7 cut(s)	437, 844, 1163, 1514, 1721, 2285, 2531
FriOI	GRGCYC	2 cut(s)	162, 501
Fsp4HI	GCNGC	7 cut(s)	263, 1363, 1419, 1680, 1737, 2154, 2213
FspBI	CTAG	4 cut(s)	164, 1890, 2499, 2537
GluI	GCNGC	7 cut(s)	263, 1363, 1419, 1680, 1737, 2154, 2213
GsaI	CCCAGC	2 cut(s)	996, 1530
GsuI	CTGGAG	1 cut(s)	740
HaeIII	GGCC	3 cut(s)	411, 629, 836
HapII	CCGG	3 cut(s)	311, 412, 680
HgaI	GACGC	2 cut(s)	452, 623
Hin1I	GRCGYC	1 cut(s)	444
HincII	GTYRAC	4 cut(s)	478, 2008, 2119, 2560
HindII	GTYRAC	4 cut(s)	478, 2008, 2119, 2560
HindIII	AAGCTT	1 cut(s)	845
HpaII	CCGG	3 cut(s)	311, 412, 680
HphI	GGTGA	3 cut(s)	63, 913, 1654
Hpy166II	GTNNAC	8 cut(s)	478, 637, 772, 1035, 1255, 2008, 2119, 2560
Hpy8I	GTNNAC	8 cut(s)	478, 637, 772, 1035, 1255, 2008, 2119, 2560
Hpy99I	CGWCG	5 cut(s)	443, 446, 538, 617, 655
HpyAV	CCTTC	9 cut(s)	30, 60, 308, 605, 742, 784, 996, 1874, 2336
HpyCH4III	ACNGT	7 cut(s)	36, 155, 473, 529, 586, 1822, 2631
HpyCH4IV	ACGT	1 cut(s)	1231
HpyF10VI	GCNNNNNNNGC	5 cut(s)	320, 343, 352, 361, 561
HpySE526I	ACGT	1 cut(s)	1231
Hsp92I	GRCGYC	1 cut(s)	444
KpnI	GGTACC	1 cut(s)	1133
KroI	GCCGGC	1 cut(s)	310
KroNI	GCCGGC	1 cut(s)	312
Kzo9I	GATC	6 cut(s)	115, 183, 708, 1952, 2447, 2601
LguI	GCTCTTC	1 cut(s)	926
LmnI	GCTCC	5 cut(s)	172, 504, 1636, 1858, 2209
Lsp1109I	GCAGC	5 cut(s)	1349, 1405, 1666, 1723, 2165
LweI	GCATC	5 cut(s)	342, 1141, 1222, 1245, 1707
MaeI	CTAG	4 cut(s)	164, 1890, 2499, 2537
MaeII	ACGT	1 cut(s)	1231
MaeIII	GTNAC	6 cut(s)	69, 149, 1066, 1227, 1267, 2452
MalI	GATC	6 cut(s)	117, 185, 710, 1954, 2449, 2603
MbiI	CCGCTC	1 cut(s)	1639
MboI	GATC	6 cut(s)	115, 183, 708, 1952, 2447, 2601
MfeI	CAATTG	6 cut(s)	576, 917, 1113, 1367, 1671, 2122
MflI	RGATCY	3 cut(s)	115, 183, 2447
MhlI	GDGCHC	2 cut(s)	162, 501
MlsI	TGGCCA	1 cut(s)	629
MluNI	TGGCCA	1 cut(s)	629
MlyI	GAGTC	3 cut(s)	920, 976, 1283
MmeI	TCCRAC	3 cut(s)	636, 888, 2633
Mox20I	TGGCCA	1 cut(s)	629
Mph1103I	ATGCAT	1 cut(s)	1215
MroNI	GCCGGC	1 cut(s)	310
MscI	TGGCCA	1 cut(s)	629
MseI	TTAA	7 cut(s)	468, 741, 803, 854, 1101, 1460, 2585
MslI	CAYNNNNRTG	5 cut(s)	1181, 1349, 1703, 1844, 2609
Msp20I	TGGCCA	1 cut(s)	629
MspI	CCGG	3 cut(s)	311, 412, 680
MspR9I	CCNGG	1 cut(s)	829
MunI	CAATTG	6 cut(s)	576, 917, 1113, 1367, 1671, 2122
Mva1269I	GAATGC	3 cut(s)	434, 1421, 1576
MvaI	CCWGG	1 cut(s)	829
MvnI	CGCG	1 cut(s)	617
MwoI	GCNNNNNNNGC	5 cut(s)	320, 343, 352, 361, 561
NaeI	GCCGGC	1 cut(s)	312
NcoI	CCATGG	1 cut(s)	1998
NdeI	CATATG	2 cut(s)	2184, 2205
NdeII	GATC	6 cut(s)	115, 183, 708, 1952, 2447, 2601
NgoMIV	GCCGGC	1 cut(s)	310
NlaIV	GGNNCC	4 cut(s)	463, 1131, 1860, 2211
NmuCI	GTSAC	3 cut(s)	69, 1066, 2452
NsiI	ATGCAT	1 cut(s)	1215
NspI	RCATGY	2 cut(s)	1225, 1603
PaeR7I	CTCGAG	1 cut(s)	347
PagI	TCATGA	2 cut(s)	174, 1585
PciI	ACATGT	1 cut(s)	1221
PciSI	GCTCTTC	1 cut(s)	926
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PctI	GAATGC	3 cut(s)	434, 1421, 1576
PdiI	GCCGGC	1 cut(s)	312
PfeI	GAWTC	7 cut(s)	46, 538, 608, 1078, 1867, 2016, 2301
PflMI	CCANNNNNTGG	1 cut(s)	943
PkrI	GCNGC	7 cut(s)	264, 1364, 1420, 1681, 1738, 2155, 2214
PleI	GAGTC	3 cut(s)	919, 975, 1282
PpsI	GAGTC	3 cut(s)	919, 975, 1282
PpuMI	RGGWCCY	1 cut(s)	295
PscI	ACATGT	1 cut(s)	1221
PshBI	ATTAAT	1 cut(s)	854
PsiI	TTATAA	1 cut(s)	1322
Psp124BI	GAGCTC	1 cut(s)	501
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	827
PspFI	CCCAGC	2 cut(s)	992, 1526
PspGI	CCWGG	1 cut(s)	827
PspN4I	GGNNCC	4 cut(s)	463, 1131, 1860, 2211
PspPI	GGNCC	2 cut(s)	295, 409
PspPPI	RGGWCCY	1 cut(s)	295
PsuI	RGATCY	3 cut(s)	115, 183, 2447
RsaI	GTAC	6 cut(s)	38, 773, 1131, 2170, 2567, 2633
RsaNI	GTAC	6 cut(s)	37, 772, 1130, 2169, 2566, 2632
RseI	CAYNNNNRTG	5 cut(s)	1181, 1349, 1703, 1844, 2609
SacI	GAGCTC	1 cut(s)	501
SapI	GCTCTTC	1 cut(s)	926
SaqAI	TTAA	7 cut(s)	468, 741, 803, 854, 1101, 1460, 2585
SatI	GCNGC	7 cut(s)	263, 1363, 1419, 1680, 1737, 2154, 2213
Sau3AI	GATC	6 cut(s)	115, 183, 708, 1952, 2447, 2601
Sau96I	GGNCC	2 cut(s)	295, 409
SchI	GAGTC	3 cut(s)	920, 976, 1283
ScrFI	CCNGG	1 cut(s)	829
SduI	GDGCHC	2 cut(s)	162, 501
SfaNI	GCATC	5 cut(s)	342, 1141, 1222, 1245, 1707
Sfr274I	CTCGAG	1 cut(s)	347
SinI	GGWCC	1 cut(s)	295
SlaI	CTCGAG	1 cut(s)	347
SmiMI	CAYNNNNRTG	5 cut(s)	1181, 1349, 1703, 1844, 2609
SmlI	CTYRAG	3 cut(s)	347, 1240, 2048
SmoI	CTYRAG	3 cut(s)	347, 1240, 2048
SsiI	CCGC	5 cut(s)	263, 321, 689, 1639, 2213
SspI	AATATT	1 cut(s)	2141
SspMI	CTAG	4 cut(s)	164, 1890, 2499, 2537
SstI	GAGCTC	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	827
StyI	CCWWGG	3 cut(s)	997, 1998, 2268
TaaI	ACNGT	7 cut(s)	36, 155, 473, 529, 586, 1822, 2631
TaiI	ACGT	1 cut(s)	1234
TaqI	TCGA	8 cut(s)	6, 330, 348, 378, 536, 598, 1743, 2620
TatI	WGTACW	2 cut(s)	771, 2631
TauI	GCSGC	2 cut(s)	265, 2215
TfiI	GAWTC	7 cut(s)	46, 538, 608, 1078, 1867, 2016, 2301
Tru1I	TTAA	7 cut(s)	468, 741, 803, 854, 1101, 1460, 2585
Tru9I	TTAA	7 cut(s)	468, 741, 803, 854, 1101, 1460, 2585
TscAI	CASTG	5 cut(s)	411, 532, 1093, 1942, 2611
TseFI	GTSAC	3 cut(s)	69, 1066, 2452
TseI	GCWGC	5 cut(s)	1362, 1418, 1679, 1736, 2153
Tsp45I	GTSAC	3 cut(s)	69, 1066, 2452
TspGWI	ACGGA	3 cut(s)	522, 1892, 2028
TspRI	CASTG	5 cut(s)	411, 532, 1093, 1942, 2611
Van91I	CCANNNNNTGG	1 cut(s)	943
VpaK11BI	GGWCC	1 cut(s)	295
VspI	ATTAAT	1 cut(s)	854
XagI	CCTNNNNNAGG	1 cut(s)	2586
XapI	RAATTY	9 cut(s)	415, 661, 1165, 1288, 1296, 1531, 1645, 2188, 2622
XceI	RCATGY	2 cut(s)	1225, 1603
XhoI	CTCGAG	1 cut(s)	347
XmiI	GTMKAC	2 cut(s)	636, 1034
XspI	CTAG	4 cut(s)	164, 1890, 2499, 2537
Zsp2I	ATGCAT	1 cut(s)	1215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.