Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001207.1

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Reverse (-)

190315 .. 190881

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001207.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgcatcttgtttatgtaaggattgactggtgggatgatgtcactaagttgctgaatgagatgctcacaaataaggtatcagatattcatcaagtgatggaggagatgatcaagggagactatgatggcaactctaactggcagatggtggagtgtgtttttgacaaactaaaatctgaggaatgtgggctaggaatgaggttctacaacactctgatagaagtattttggtggttaagtcagaaacaaagagttgagctttgcatatgtacctcaagtcctccttcagggacaaaaacatcattttccgatgttgatagtgtttggtataatggcacaagttcagatgcaacaggtaggacgattgcagcgacaaatgctctttctactaagaagctgtcactctttctactcacaggctattactataccaatactcttggtcagcatatagatacaagagttactacgacctacggtttacagtgttctttaccaaggcatgaggacatgccttctttcaaggggggaggattgttaggatcacaatgtttactaggccaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

188

Amino Acids

21.3

Weight (kDa)

5.31

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	550
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	523
AluBI	AGCT	2 cut(s)	259, 397
AluI	AGCT	2 cut(s)	259, 397
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	550
AoxI	GGCC	1 cut(s)	559
ApeKI	GCWGC	1 cut(s)	368
BaeI	ACNNNNGTAYC	2 cut(s)	447, 480
BbvI	GCAGC	1 cut(s)	380
BccI	CCATC	3 cut(s)	91, 119, 139
BclI	TGATCA	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	2 cut(s)	191, 557
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
BmsI	GCATC	3 cut(s)	13, 51, 337
BpuEI	CTTGAG	1 cut(s)	259
BsaBI	GATNNNNATC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse1I	ACTGG	2 cut(s)	32, 143
Bse8I	GATNNNNATC	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	497
BseGI	GGATG	1 cut(s)	40
BseJI	GATNNNNATC	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	2 cut(s)	32, 143
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	380
BshFI	GGCC	1 cut(s)	561
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	561
Bsp143I	GATC	2 cut(s)	108, 542
BspANI	GGCC	1 cut(s)	561
BspCNI	CTCAG	1 cut(s)	169
BspPI	GGATC	1 cut(s)	550
BsrI	ACTGG	2 cut(s)	32, 143
BssECI	CCNNGG	1 cut(s)	497
BssMI	GATC	2 cut(s)	108, 542
BssT1I	CCWWGG	1 cut(s)	497
Bst4CI	ACNGT	2 cut(s)	479, 486
BstDEI	CTNAG	3 cut(s)	45, 177, 390
BstENI	CCTNNNNNAGG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	2 cut(s)	111, 545
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	2 cut(s)	108, 542
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNSI	RCATGY	1 cut(s)	514
BstV1I	GCAGC	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	561
BtsCI	GGATG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	491
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	2 cut(s)	503, 511
CviJI	RGCY	5 cut(s)	190, 259, 397, 420, 561
CviKI_1	RGCY	5 cut(s)	190, 259, 397, 420, 561
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	3 cut(s)	45, 177, 390
DpnI	GATC	2 cut(s)	110, 544
DpnII	GATC	2 cut(s)	108, 542
Eco130I	CCWWGG	1 cut(s)	497
Eco57I	CTGAAG	1 cut(s)	270
EcoNI	CCTNNNNNAGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	497
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	497
FaeI	CATG	2 cut(s)	506, 514
FalI	AAGNNNNNCTT	2 cut(s)	268, 300
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	2 cut(s)	502, 510
FauNDI	CATATG	1 cut(s)	266
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	2 cut(s)	191, 557
GluI	GCNGC	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	561
Hin1II	CATG	2 cut(s)	506, 514
Hpy166II	GTNNAC	2 cut(s)	482, 554
Hpy188I	TCNGA	6 cut(s)	82, 178, 216, 243, 310, 346
Hpy8I	GTNNAC	2 cut(s)	482, 554
HpyAV	CCTTC	2 cut(s)	294, 525
HpyCH4III	ACNGT	2 cut(s)	479, 486
HpyCH4V	TGCA	4 cut(s)	4, 264, 350, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	3 cut(s)	45, 177, 390
Hsp92II	CATG	2 cut(s)	506, 514
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	108, 542
LpnPI	CCDG	5 cut(s)	13, 124, 273, 339, 402
Lsp1109I	GCAGC	1 cut(s)	380
LweI	GCATC	3 cut(s)	13, 51, 337
MaeI	CTAG	2 cut(s)	191, 557
MaeIII	GTNAC	3 cut(s)	40, 399, 463
MalI	GATC	2 cut(s)	110, 544
MboI	GATC	2 cut(s)	108, 542
MnlI	CCTC	7 cut(s)	94, 172, 192, 283, 291, 499, 524
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	377
NdeI	CATATG	1 cut(s)	266
NdeII	GATC	2 cut(s)	108, 542
NlaIII	CATG	2 cut(s)	506, 514
NmuCI	GTSAC	2 cut(s)	40, 399
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	514
PcsI	WCGNNNNNNNCGW	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	370
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	2 cut(s)	108, 542
SetI	ASST	7 cut(s)	78, 203, 261, 275, 358, 399, 476
SfaNI	GCATC	3 cut(s)	13, 51, 337
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
SspMI	CTAG	2 cut(s)	191, 557
StyI	CCWWGG	1 cut(s)	497
TaaI	ACNGT	2 cut(s)	479, 486
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	1 cut(s)	491
TseFI	GTSAC	2 cut(s)	40, 399
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	2 cut(s)	40, 399
TspDTI	ATGAA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	491
XagI	CCTNNNNNAGG	1 cut(s)	285
XceI	RCATGY	1 cut(s)	514
XspI	CTAG	2 cut(s)	191, 557
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.