Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007104.1

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Forward (+)

34237 .. 37879

Gene Structure 3643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007104.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3006 bp

atgaatccttcaattccaacctttcagtcaccctcagtccccacttttgttcaaccccaaccccaatttacagatcccatacctccatcttctaattgttcaatgggtaactgtgagcccctagctccaatcacgagtaggatccgaaccatatcatcttcctcttcttcatcatctgacccacaaacccacgaagatacaataaacccatcttctctgccgccactttcgggtgtttcggtgcaacaggaggtccttcgctctaagccggctttctccgcctttatcgacaagctcgggaagctcgagatgctttgccagcctccctcagtcatcgacaccgaggaggtcagccttgcctcactgggccggaattccgatgaggaatgcaaaagcgacgacgccatcatccccaaaggcaccactaacggtgtcaacctcgccagcactcccgagctccaccccgaactcgtcagcctcaacactgctccgtcgattctgaacctcctcaaccatgacagcaccgacattgcaattgacaccgttcagttccttctgttgtctgattccgacgcgattactgacaaattggacaacaagccttctttgggttctaaagaccttggttcaaaggaagcaaccaaacttgttagtgaccataatgatatttttattgtgggctacactaagcctcctgatgatttcaaagttgatgatcacagttttgatttccacagaattttcattaaagcactgattgcgttctacttgaaatacattgatcagttgcccagccttggaaggtatgatgatagtcatgctaaagtttcgtctaccattttgaatgatgaaaattatatgtttgtgactgttgtgaatctatgcactgctttagtttttaagtactgtccaattggtatagttgaggtaccaaagaagtggtttttggatgcgacaagtatgaattctcatatcatagaagtgatgagttttgcttttgagttgctaatgcatcaacacatgtggttacgttgcatctcaagtcgtcttgtccacattgcttctgtaacagagtcttgctcaggaaattctgaaattccatttggcacttactatcctataaaacctaatgaacttttcatcatagctgtgtatctctactggcaattgaagacacaacgcattgatgatgtagccaacaatcttattacacaagctgcattcaatgacaaattggacattttccagtcaagttatttaagtggaggtattgtagtctcctctgatatgcgtgatttggatgatagtgctttcaatgataatgctgggaatttgcatcctgatgacgcatttgggaaaatggtaagggatgccaatttgtttcatgaatatatgaacatgcttgcgaaaatgcttttcaagagtggtagtaaggagcgggtgaatttaaatgttagtataatggatacaattgttgctgcattatgtggagagagcatcaagatggatgagcaatttggaacaatgattgttgctgctatcgacaaggctggacaaaaagctaagaaaaaacaagtggaggatattattgttgttggtatgactgccaaattgaatactgtgagtaatagcatgggcattagtacgggtaatagggagcctgagattcaaagcacggaaggggtgtctagtgtgatgtggaagaataatgctcaatcacatcatttccagcacactgactttggtaatggttcatctgttgggaacttacttctctattctgaggttcttacttccatggaagttgacaacggattcttgaatggtaattttctgcttttacctcttgagaacatgagtttgcttcttgctgataagtgggagataatggacaaaattgtgaaaatgatgtttgttgacaattgggagagatggaaatatttagtaattgcagcaaataagaatggtactaaagagttgcatatgaatctctttgaaaaccatatggagccgcatgagaagtgttcggggtatgctatgttaggtgttatagttgctgtgcctaccttggatgttcttcatataatgcagaagttgggattcaaacccaattatcacaatttccttcggttattctcaacttatgttagtgtgtttgttgtgagaaaagtatttacaagtttgaagttgttgcaaaatgagtatcaatataattcagtagatgtcaaggttgttgttgcaagtgcaattattcaattgcatttaattaaagctactgagttatacaagggaatggacaatcttgtgagagcttttgagatatgtgtatcatctaatgatttggccaaccatcattcctcaaatggtccacaagttttaattgagcagatcattgatattgaatttggtgtggatatgtacggagcaactatggtacattggctcgctaattatgatgcaggactcaattggcaaggagcaaaggaaaacagtacatggtttatcaaaatgcttggctttcatcattttagcactaacaaagtgctccagcaacacacttgtctgcagcatctgcaactggttattaggaaactcactcaggcagaaactcagatttatgaaggaagctgcattaatggatctgtcacaataacaaaagagaagcaactcaaagctatgctaattgacactagcttgggtaatgacttggatgatgaagcagggagactagctaaggtactgactgacatagatcaagcctctcaagcttggttatttgcgtggatgaccttttcacttgccccctttctgattcttggtgcactattgatatatgtcacacatgcaatgagtaccattgcttcatcatttgttcagctcggtattgaggttgacaagtacgtcaatgttcaacctttaacaggtattgctaagatcactggtatgagccatcgaattccacagtacaatgtctcttgtggaagttggaagacatttcaggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRIM

Protein Analysis

1001

Amino Acids

111.47

Weight (kDa)

5.43

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2900
Acc65I	GGTACC	1 cut(s)	928
AccB1I	GGYRCC	2 cut(s)	419, 928
AccBSI	CCGCTC	1 cut(s)	1438
AccI	GTMKAC	1 cut(s)	833
AccII	CGCG	1 cut(s)	575
AciI	CCGC	4 cut(s)	221, 279, 1438, 2012
AclWI	GGATC	4 cut(s)	68, 136, 149, 2647
AcoI	YGGCCR	1 cut(s)	2343
AcsI	RAATTY	9 cut(s)	373, 738, 964, 1087, 1095, 1330, 1444, 2402, 2955
AcyI	GRCGYC	1 cut(s)	402
AfiI	CCNNNNNNNGG	4 cut(s)	230, 608, 797, 2921
AflIII	ACRYGT	1 cut(s)	1020
AjuI	GAANNNNNNNTTGG	4 cut(s)	929, 961, 1086, 1118
Alw21I	GWGCWC	3 cut(s)	459, 2547, 2824
Alw26I	GTCTC	3 cut(s)	1282, 2719, 2977
Alw44I	GTGCAC	1 cut(s)	2820
AlwI	GGATC	4 cut(s)	68, 136, 149, 2647
AlwNI	CAGNNNCTG	1 cut(s)	2572
Ama87I	CYCGRG	3 cut(s)	296, 305, 452
AoxI	GGCC	2 cut(s)	367, 2343
ApaLI	GTGCAC	1 cut(s)	2820
ApeKI	GCWGC	6 cut(s)	1217, 1478, 1535, 1952, 2566, 2628
ApoI	RAATTY	9 cut(s)	373, 738, 964, 1087, 1095, 1330, 1444, 2402, 2955
AseI	ATTAAT	1 cut(s)	2634
Asp718I	GGTACC	1 cut(s)	928
AspS9I	GGNCC	3 cut(s)	253, 367, 2366
AsuHPI	GGTGA	2 cut(s)	21, 1453
AvaI	CYCGRG	3 cut(s)	296, 305, 452
AvaII	GGWCC	2 cut(s)	253, 2366
BaeGI	GKGCMC	1 cut(s)	2824
BaeI	ACNNNNGTAYC	2 cut(s)	1458, 1491
BalI	TGGCCA	1 cut(s)	2345
BamHI	GGATCC	1 cut(s)	141
BanI	GGYRCC	2 cut(s)	419, 928
BanII	GRGCYC	2 cut(s)	120, 459
BarI	GAAGNNNNNNTAC	2 cut(s)	2845, 2877
BauI	CACGAG	1 cut(s)	133
BbsI	GAAGAC	2 cut(s)	1178, 2996
Bbv12I	GWGCWC	3 cut(s)	459, 2547, 2824
BbvI	GCAGC	6 cut(s)	1204, 1465, 1522, 1964, 2578, 2615
BccI	CCATC	7 cut(s)	94, 217, 413, 1498, 1926, 2358, 2958
BciVI	GTATCC	1 cut(s)	1459
BclI	TGATCA	2 cut(s)	715, 781
BcoDI	GTCTC	3 cut(s)	1282, 2719, 2977
BfaI	CTAG	4 cut(s)	122, 1689, 2691, 2729
BfmI	CTRYAG	1 cut(s)	2564
BfuI	GTATCC	1 cut(s)	1459
BisI	GCNGC	8 cut(s)	221, 1218, 1479, 1536, 1953, 2012, 2567, 2629
BlsI	GCNGC	8 cut(s)	222, 1219, 1480, 1537, 1954, 2013, 2568, 2630
BmcAI	AGTACT	1 cut(s)	905
Bme18I	GGWCC	2 cut(s)	253, 2366
BmeT110I	CYCGRG	3 cut(s)	296, 305, 452
BmgT120I	GGNCC	3 cut(s)	253, 367, 2366
BmiI	GGNNCC	5 cut(s)	143, 421, 930, 1659, 2010
BmrI	ACTGGG	1 cut(s)	374
BmsI	GCATC	9 cut(s)	300, 940, 1021, 1044, 1345, 1360, 1506, 2446, 2578
BmuI	ACTGGG	1 cut(s)	374
BpiI	GAAGAC	2 cut(s)	1178, 2996
BplI	GAGNNNNNCTC	2 cut(s)	1064, 1096
BpmI	CTGGAG	1 cut(s)	2531
Bpu10I	CCTNAGC	2 cut(s)	1081, 2733
BpuEI	CTTGAG	3 cut(s)	1024, 1868, 2748
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	5 cut(s)	342, 622, 796, 1797, 2067
BsaXI	ACNNNNNCTCC	4 cut(s)	676, 706, 1257, 1287
Bsc4I	CCNNNNNNNGG	4 cut(s)	230, 608, 797, 2921
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	5 cut(s)	369, 1166, 1246, 2583, 2944
Bse3DI	GCAATG	4 cut(s)	528, 1056, 2853, 2856
BseDI	CCNNGG	5 cut(s)	342, 622, 796, 1797, 2067
BseGI	GGATG	9 cut(s)	408, 955, 1306, 1336, 1375, 1513, 2077, 2716, 2790
BseLI	CCNNNNNNNGG	4 cut(s)	230, 608, 797, 2921
BseMI	GCAATG	4 cut(s)	528, 1056, 2853, 2856
BseMII	CTCAG	8 cut(s)	48, 342, 1095, 1653, 1773, 2268, 2612, 2624
BseNI	ACTGG	5 cut(s)	369, 1166, 1246, 2583, 2944
BseRI	GAGGAG	3 cut(s)	359, 497, 1270
BseSI	GKGCMC	1 cut(s)	2824
BseXI	GCAGC	6 cut(s)	1204, 1465, 1522, 1964, 2578, 2615
BseYI	CCCAGC	2 cut(s)	791, 1325
Bsh1236I	CGCG	1 cut(s)	575
BshFI	GGCC	2 cut(s)	369, 2345
BshNI	GGYRCC	2 cut(s)	419, 928
BsiHKAI	GWGCWC	3 cut(s)	459, 2547, 2824
BsiHKCI	CYCGRG	3 cut(s)	296, 305, 452
BsiSI	CCGG	2 cut(s)	269, 370
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	4 cut(s)	230, 608, 797, 2921
BsmAI	GTCTC	3 cut(s)	1282, 2719, 2977
BsmFI	GGGAC	1 cut(s)	23
BsmI	GAATGC	2 cut(s)	392, 1220
BsnI	GGCC	2 cut(s)	369, 2345
BsoBI	CYCGRG	3 cut(s)	296, 305, 452
Bsp1286I	GDGCHC	4 cut(s)	120, 459, 2547, 2824
Bsp143I	GATC	8 cut(s)	73, 141, 715, 781, 2388, 2639, 2752, 2934
Bsp19I	CCATGG	1 cut(s)	1797
BspACI	CCGC	4 cut(s)	221, 279, 1438, 2012
BspANI	GGCC	2 cut(s)	369, 2345
BspCNI	CTCAG	8 cut(s)	47, 341, 1094, 1654, 1774, 2269, 2611, 2623
BspFNI	CGCG	1 cut(s)	575
BspHI	TCATGA	1 cut(s)	1384
BspLI	GGNNCC	5 cut(s)	143, 421, 930, 1659, 2010
BspMAI	CTGCAG	1 cut(s)	2568
BspPI	GGATC	4 cut(s)	68, 136, 149, 2647
BspT107I	GGYRCC	2 cut(s)	419, 928
BsrBI	CCGCTC	1 cut(s)	1438
BsrDI	GCAATG	4 cut(s)	528, 1056, 2853, 2856
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	5 cut(s)	369, 1166, 1246, 2583, 2944
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	5 cut(s)	342, 622, 796, 1797, 2067
BssMI	GATC	8 cut(s)	73, 141, 715, 781, 2388, 2639, 2752, 2934
BssNI	GRCGYC	1 cut(s)	402
BssSI	CACGAG	1 cut(s)	133
BssT1I	CCWWGG	4 cut(s)	622, 796, 1797, 2067
Bst2BI	CACGAG	1 cut(s)	133
Bst4CI	ACNGT	9 cut(s)	113, 431, 544, 722, 871, 908, 1621, 2492, 2964
Bst6I	CTCTTC	1 cut(s)	169
BstACI	GRCGYC	1 cut(s)	402
BstAPI	GCANNNNNTGC	2 cut(s)	758, 2572
BstC8I	GCNNGC	5 cut(s)	270, 320, 445, 1404, 2445
BstDSI	CCRYGG	1 cut(s)	1797
BstENI	CCTNNNNNAGG	1 cut(s)	2919
BstF5I	GGATG	9 cut(s)	408, 955, 1306, 1336, 1375, 1513, 2077, 2716, 2790
BstFNI	CGCG	1 cut(s)	575
BstKTI	GATC	8 cut(s)	76, 144, 718, 784, 2391, 2642, 2755, 2937
BstMAI	GTCTC	3 cut(s)	1282, 2719, 2977
BstMBI	GATC	8 cut(s)	73, 141, 715, 781, 2388, 2639, 2752, 2934
BstMWI	GCNNNNNNNGC	7 cut(s)	278, 301, 310, 319, 758, 2572, 2765
BstNSI	RCATGY	3 cut(s)	1024, 1402, 2846
BstSFI	CTRYAG	1 cut(s)	2564
BstSLI	GKGCMC	1 cut(s)	2824
BstUI	CGCG	1 cut(s)	575
BstV1I	GCAGC	6 cut(s)	1204, 1465, 1522, 1964, 2578, 2615
BstV2I	GAAGAC	2 cut(s)	1178, 2996
BstX2I	RGATCY	3 cut(s)	73, 141, 2639
BstXI	CCANNNNNNTGG	1 cut(s)	939
BstYI	RGATCY	3 cut(s)	73, 141, 2639
BsuI	GTATCC	1 cut(s)	1459
BsuRI	GGCC	2 cut(s)	369, 2345
BtgI	CCRYGG	1 cut(s)	1797
BtsCI	GGATG	9 cut(s)	408, 955, 1306, 1336, 1375, 1513, 2077, 2716, 2790
BtsI	GCAGTG	2 cut(s)	483, 885
BtsIMutI	CAGTG	6 cut(s)	362, 483, 752, 885, 1734, 2937
Cac8I	GCNNGC	5 cut(s)	270, 320, 445, 1404, 2445
CaiI	CAGNNNCTG	1 cut(s)	2572
CciI	TCATGA	1 cut(s)	1384
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	3 cut(s)	253, 367, 2366
CseI	GACGC	3 cut(s)	410, 581, 1355
CspCI	CAANNNNNGTGG	2 cut(s)	1004, 1039
DpnI	GATC	8 cut(s)	75, 143, 717, 783, 2390, 2641, 2754, 2936
DpnII	GATC	8 cut(s)	73, 141, 715, 781, 2388, 2639, 2752, 2934
DraI	TTTAAA	1 cut(s)	1449
DrdI	GACNNNNNNGTC	1 cut(s)	2900
DseDI	GACNNNNNNGTC	1 cut(s)	2900
EaeI	YGGCCR	1 cut(s)	2343
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
EciI	GGCGGA	1 cut(s)	268
Ecl136II	GAGCTC	1 cut(s)	457
Eco130I	CCWWGG	4 cut(s)	622, 796, 1797, 2067
Eco24I	GRGCYC	2 cut(s)	120, 459
Eco47I	GGWCC	2 cut(s)	253, 2366
Eco53kI	GAGCTC	1 cut(s)	457
Eco88I	CYCGRG	3 cut(s)	296, 305, 452
EcoICRI	GAGCTC	1 cut(s)	457
EcoNI	CCTNNNNNAGG	1 cut(s)	2919
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRI	GAATTC	3 cut(s)	373, 964, 2955
EcoT14I	CCWWGG	4 cut(s)	622, 796, 1797, 2067
EcoT22I	ATGCAT	1 cut(s)	1014
EcoT38I	GRGCYC	2 cut(s)	120, 459
ErhI	CCWWGG	4 cut(s)	622, 796, 1797, 2067
FaqI	GGGAC	1 cut(s)	23
FauI	CCCGC	1 cut(s)	1431
FauNDI	CATATG	2 cut(s)	1983, 2004
FbaI	TGATCA	2 cut(s)	715, 781
FblI	GTMKAC	1 cut(s)	833
Fnu4HI	GCNGC	8 cut(s)	221, 1218, 1479, 1536, 1953, 2012, 2567, 2629
FokI	GGATG	9 cut(s)	395, 962, 1313, 1323, 1382, 1520, 2084, 2723, 2797
FriOI	GRGCYC	2 cut(s)	120, 459
Fsp4HI	GCNGC	8 cut(s)	221, 1218, 1479, 1536, 1953, 2012, 2567, 2629
FspBI	CTAG	4 cut(s)	122, 1689, 2691, 2729
GluI	GCNGC	8 cut(s)	221, 1218, 1479, 1536, 1953, 2012, 2567, 2629
GsaI	CCCAGC	2 cut(s)	795, 1329
GsuI	CTGGAG	1 cut(s)	2531
HaeIII	GGCC	2 cut(s)	369, 2345
HapII	CCGG	2 cut(s)	269, 370
HgaI	GACGC	3 cut(s)	410, 581, 1355
Hin1I	GRCGYC	1 cut(s)	402
HincII	GTYRAC	4 cut(s)	436, 1807, 1918, 2893
HindII	GTYRAC	4 cut(s)	436, 1807, 1918, 2893
HindIII	AAGCTT	1 cut(s)	2766
HpaII	CCGG	2 cut(s)	269, 370
HphI	GGTGA	2 cut(s)	21, 1453
Hpy166II	GTNNAC	8 cut(s)	436, 834, 1054, 1807, 1918, 2369, 2822, 2893
Hpy8I	GTNNAC	8 cut(s)	436, 834, 1054, 1807, 1918, 2369, 2822, 2893
Hpy99I	CGWCG	4 cut(s)	401, 404, 496, 575
HpyAV	CCTTC	8 cut(s)	18, 266, 563, 612, 795, 1673, 2135, 2615
HpyCH4III	ACNGT	9 cut(s)	113, 431, 544, 722, 871, 908, 1621, 2492, 2964
HpyCH4IV	ACGT	2 cut(s)	1030, 2901
HpyF10VI	GCNNNNNNNGC	7 cut(s)	278, 301, 310, 319, 758, 2572, 2765
HpySE526I	ACGT	2 cut(s)	1030, 2901
Hsp92I	GRCGYC	1 cut(s)	402
KpnI	GGTACC	1 cut(s)	932
KroI	GCCGGC	1 cut(s)	268
KroNI	GCCGGC	1 cut(s)	270
Ksp22I	TGATCA	2 cut(s)	715, 781
Kzo9I	GATC	8 cut(s)	73, 141, 715, 781, 2388, 2639, 2752, 2934
LmnI	GCTCC	9 cut(s)	130, 462, 493, 1435, 1657, 2008, 2423, 2477, 2550
Lsp1109I	GCAGC	6 cut(s)	1204, 1465, 1522, 1964, 2578, 2615
LweI	GCATC	9 cut(s)	300, 940, 1021, 1044, 1345, 1360, 1506, 2446, 2578
MaeI	CTAG	4 cut(s)	122, 1689, 2691, 2729
MaeII	ACGT	2 cut(s)	1030, 2901
MaeIII	GTNAC	8 cut(s)	27, 107, 653, 865, 1026, 1066, 2644, 2836
MalI	GATC	8 cut(s)	75, 143, 717, 783, 2390, 2641, 2754, 2936
MbiI	CCGCTC	1 cut(s)	1438
MboI	GATC	8 cut(s)	73, 141, 715, 781, 2388, 2639, 2752, 2934
MfeI	CAATTG	7 cut(s)	534, 912, 1166, 1470, 1921, 2255, 2467
MflI	RGATCY	3 cut(s)	73, 141, 2639
MhlI	GDGCHC	4 cut(s)	120, 459, 2547, 2824
MlsI	TGGCCA	1 cut(s)	2345
MluNI	TGGCCA	1 cut(s)	2345
MlyI	GAGTC	2 cut(s)	1082, 2457
MmeI	TCCRAC	3 cut(s)	41, 594, 2966
Mox20I	TGGCCA	1 cut(s)	2345
Mph1103I	ATGCAT	1 cut(s)	1014
MroNI	GCCGGC	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	2345
MseI	TTAA	9 cut(s)	747, 900, 1259, 1448, 2264, 2268, 2378, 2634, 2918
MslI	CAYNNNNRTG	5 cut(s)	980, 1148, 1341, 1502, 2942
Msp20I	TGGCCA	1 cut(s)	2345
MspI	CCGG	2 cut(s)	269, 370
MunI	CAATTG	7 cut(s)	534, 912, 1166, 1470, 1921, 2255, 2467
Mva1269I	GAATGC	2 cut(s)	392, 1220
MvnI	CGCG	1 cut(s)	575
MwoI	GCNNNNNNNGC	7 cut(s)	278, 301, 310, 319, 758, 2572, 2765
NaeI	GCCGGC	1 cut(s)	270
NcoI	CCATGG	1 cut(s)	1797
NdeI	CATATG	2 cut(s)	1983, 2004
NdeII	GATC	8 cut(s)	73, 141, 715, 781, 2388, 2639, 2752, 2934
NgoMIV	GCCGGC	1 cut(s)	268
NlaIV	GGNNCC	5 cut(s)	143, 421, 930, 1659, 2010
NmuCI	GTSAC	5 cut(s)	27, 653, 865, 2644, 2836
NsiI	ATGCAT	1 cut(s)	1014
NspI	RCATGY	3 cut(s)	1024, 1402, 2846
PacI	TTAATTAA	1 cut(s)	2268
PaeR7I	CTCGAG	1 cut(s)	305
PagI	TCATGA	1 cut(s)	1384
PciI	ACATGT	1 cut(s)	1020
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PctI	GAATGC	2 cut(s)	392, 1220
PdiI	GCCGGC	1 cut(s)	270
PfeI	GAWTC	9 cut(s)	4, 496, 566, 877, 1666, 1815, 1987, 2100, 2812
PkrI	GCNGC	8 cut(s)	222, 1219, 1480, 1537, 1954, 2013, 2568, 2630
PleI	GAGTC	2 cut(s)	1081, 2457
PpsI	GAGTC	2 cut(s)	1081, 2457
PpuMI	RGGWCCY	1 cut(s)	253
PscI	ACATGT	1 cut(s)	1020
PshBI	ATTAAT	1 cut(s)	2634
Psp124BI	GAGCTC	1 cut(s)	459
Psp5II	RGGWCCY	1 cut(s)	253
PspFI	CCCAGC	2 cut(s)	791, 1325
PspN4I	GGNNCC	5 cut(s)	143, 421, 930, 1659, 2010
PspPI	GGNCC	3 cut(s)	253, 367, 2366
PspPPI	RGGWCCY	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	2568
PstNI	CAGNNNCTG	1 cut(s)	2572
PsuI	RGATCY	3 cut(s)	73, 141, 2639
RseI	CAYNNNNRTG	5 cut(s)	980, 1148, 1341, 1502, 2942
SacI	GAGCTC	1 cut(s)	459
SaqAI	TTAA	9 cut(s)	747, 900, 1259, 1448, 2264, 2268, 2378, 2634, 2918
SatI	GCNGC	8 cut(s)	221, 1218, 1479, 1536, 1953, 2012, 2567, 2629
Sau3AI	GATC	8 cut(s)	73, 141, 715, 781, 2388, 2639, 2752, 2934
Sau96I	GGNCC	3 cut(s)	253, 367, 2366
ScaI	AGTACT	1 cut(s)	905
SchI	GAGTC	2 cut(s)	1082, 2457
SduI	GDGCHC	4 cut(s)	120, 459, 2547, 2824
SfaNI	GCATC	9 cut(s)	300, 940, 1021, 1044, 1345, 1360, 1506, 2446, 2578
SfcI	CTRYAG	1 cut(s)	2564
Sfr274I	CTCGAG	1 cut(s)	305
SinI	GGWCC	2 cut(s)	253, 2366
SlaI	CTCGAG	1 cut(s)	305
SmiI	ATTTAAAT	1 cut(s)	1449
SmiMI	CAYNNNNRTG	5 cut(s)	980, 1148, 1341, 1502, 2942
SmlI	CTYRAG	4 cut(s)	305, 1039, 1847, 2763
SmoI	CTYRAG	4 cut(s)	305, 1039, 1847, 2763
SsiI	CCGC	4 cut(s)	221, 279, 1438, 2012
SspI	AATATT	1 cut(s)	1940
SspMI	CTAG	4 cut(s)	122, 1689, 2691, 2729
SstI	GAGCTC	1 cut(s)	459
StyI	CCWWGG	4 cut(s)	622, 796, 1797, 2067
SwaI	ATTTAAAT	1 cut(s)	1449
TaaI	ACNGT	9 cut(s)	113, 431, 544, 722, 871, 908, 1621, 2492, 2964
TaiI	ACGT	2 cut(s)	1033, 2904
TaqI	TCGA	6 cut(s)	288, 306, 336, 494, 1542, 2953
TatI	WGTACW	3 cut(s)	903, 2492, 2964
TauI	GCSGC	2 cut(s)	223, 2014
TfiI	GAWTC	9 cut(s)	4, 496, 566, 877, 1666, 1815, 1987, 2100, 2812
Tru1I	TTAA	9 cut(s)	747, 900, 1259, 1448, 2264, 2268, 2378, 2634, 2918
Tru9I	TTAA	9 cut(s)	747, 900, 1259, 1448, 2264, 2268, 2378, 2634, 2918
TscAI	CASTG	6 cut(s)	369, 490, 759, 892, 1741, 2944
TseFI	GTSAC	5 cut(s)	27, 653, 865, 2644, 2836
TseI	GCWGC	6 cut(s)	1217, 1478, 1535, 1952, 2566, 2628
Tsp45I	GTSAC	5 cut(s)	27, 653, 865, 2644, 2836
TspGWI	ACGGA	4 cut(s)	480, 1691, 1827, 2436
TspRI	CASTG	6 cut(s)	369, 490, 759, 892, 1741, 2944
VneI	GTGCAC	1 cut(s)	2820
VpaK11BI	GGWCC	2 cut(s)	253, 2366
VspI	ATTAAT	1 cut(s)	2634
XagI	CCTNNNNNAGG	1 cut(s)	2919
XapI	RAATTY	9 cut(s)	373, 738, 964, 1087, 1095, 1330, 1444, 2402, 2955
XceI	RCATGY	3 cut(s)	1024, 1402, 2846
XhoI	CTCGAG	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	833
XspI	CTAG	4 cut(s)	122, 1689, 2691, 2729
ZrmI	AGTACT	1 cut(s)	905
Zsp2I	ATGCAT	1 cut(s)	1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.