Rh5BG126700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003456
Physical Location & Seq
Reverse (-)
12046908 .. 12049972
3065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG126700.1

Sequence Viewer

Length: 372 bp
ATGAAGAATCTCAAGGTTCCAGCGACTCGTAAGTATTTTACTTCGTGTTTGTTGAAGATTTATGAAGAAAGCTGCATTAATGGATTTGTCACAAAAACAAAAGAGAAGCAAGTCAAAGCTATGGTAATTGACACTAGGTTGGGAAGTGACTTGGATGATGAAGCAGGGAAACCAGCTAAGGTACTGACTAACATAGATCAAGCCTCTCAAGCTTGGCTATTTGCATGGAGGACCTTTTCACTTGCCAACTTTCTGATTATTGGTGCACTGCTGATATCAGTCGCACATGCAATGAGTACCATCGCTGCATCATATGTTCAGCTTGGTATTGAGGTTGACAGGTACAACAATGATCAGCCTTTAACAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.7

Weight (kDa)

7.73

Isoelectric Point (pI)

27.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 183, 298, 344
AgsI TTSAA 1 cut(s) 55
AluBI AGCT 5 cut(s) 72, 119, 176, 212, 322
AluI AGCT 5 cut(s) 72, 119, 176, 212, 322
Alw21I GWGCWC 1 cut(s) 268
Alw44I GTGCAC 1 cut(s) 264
ApaLI GTGCAC 1 cut(s) 264
ApeKI GCWGC 2 cut(s) 72, 305
AseI ATTAAT 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 231
AvaII GGWCC 1 cut(s) 231
BaeGI GKGCMC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 59, 292
BccI CCATC 1 cut(s) 308
BclI TGATCA 1 cut(s) 352
BfaI CTAG 1 cut(s) 135
BisI GCNGC 2 cut(s) 73, 306
BlsI GCNGC 2 cut(s) 74, 307
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 1 cut(s) 317
Bpu10I CCTNAGC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 192
Bse3DI GCAATG 1 cut(s) 297
BseGI GGATG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 297
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 2 cut(s) 59, 292
BsiHKAI GWGCWC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 2 cut(s) 196, 352
BspLI GGNNCC 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 297
BssMI GATC 2 cut(s) 196, 352
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 2 cut(s) 199, 355
BstMBI GATC 2 cut(s) 196, 352
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 290
BstSLI GKGCMC 1 cut(s) 268
BstV1I GCAGC 2 cut(s) 59, 292
BtgZI GCGATG 1 cut(s) 286
BtsCI GGATG 1 cut(s) 160
BtsI GCAGTG 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 231
Csp6I GTAC 3 cut(s) 182, 297, 343
CviAII CATG 2 cut(s) 225, 287
CviJI RGCY 8 cut(s) 72, 119, 176, 203, 212, 217, 322, 358
CviKI_1 RGCY 8 cut(s) 72, 119, 176, 203, 212, 217, 322, 358
CviQI GTAC 3 cut(s) 182, 297, 343
DdeI CTNAG 1 cut(s) 177
DpnI GATC 2 cut(s) 198, 354
DpnII GATC 2 cut(s) 196, 352
Eco32I GATATC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 231
EcoRV GATATC 1 cut(s) 276
FaeI CATG 2 cut(s) 228, 290
FaiI YATR 7 cut(s) 63, 122, 194, 226, 288, 313, 315
FatI CATG 2 cut(s) 224, 286
FauNDI CATATG 1 cut(s) 313
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 2 cut(s) 73, 306
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 2 cut(s) 73, 306
FspBI CTAG 1 cut(s) 135
GluI GCNGC 2 cut(s) 73, 306
Hin1II CATG 2 cut(s) 228, 290
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 2 cut(s) 7, 25
Hpy166II GTNNAC 2 cut(s) 266, 337
Hpy188I TCNGA 1 cut(s) 255
Hpy8I GTNNAC 2 cut(s) 266, 337
HpyCH4V TGCA 5 cut(s) 75, 224, 266, 290, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 2 cut(s) 228, 290
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 2 cut(s) 196, 352
LpnPI CCDG 4 cut(s) 33, 150, 186, 325
Lsp1109I GCAGC 2 cut(s) 59, 292
LweI GCATC 1 cut(s) 317
MaeI CTAG 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 88, 146
MalI GATC 2 cut(s) 198, 354
MboI GATC 2 cut(s) 196, 352
MboII GAAGA 3 cut(s) 16, 67, 77
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 1 cut(s) 126
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 3 cut(s) 214, 222, 325
MseI TTAA 2 cut(s) 78, 362
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeI CATATG 1 cut(s) 313
NdeII GATC 2 cut(s) 196, 352
NlaIII CATG 2 cut(s) 228, 290
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 2 cut(s) 88, 146
NspI RCATGY 1 cut(s) 290
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 2 cut(s) 74, 307
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PpuMI RGGWCCY 1 cut(s) 231
PshBI ATTAAT 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 231
PspPPI RGGWCCY 1 cut(s) 231
RsaI GTAC 3 cut(s) 183, 298, 344
RsaNI GTAC 3 cut(s) 182, 297, 343
SaqAI TTAA 2 cut(s) 78, 362
SatI GCNGC 2 cut(s) 73, 306
Sau3AI GATC 2 cut(s) 196, 352
Sau96I GGNCC 1 cut(s) 231
SchI GAGTC 1 cut(s) 19
SduI GDGCHC 1 cut(s) 268
SfaNI GCATC 1 cut(s) 317
SinI GGWCC 1 cut(s) 231
SmlI CTYRAG 2 cut(s) 11, 207
SmoI CTYRAG 2 cut(s) 11, 207
Sse9I AATT 1 cut(s) 126
SspMI CTAG 1 cut(s) 135
TasI AATT 1 cut(s) 126
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 78, 362
Tru9I TTAA 2 cut(s) 78, 362
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 2 cut(s) 88, 146
TseI GCWGC 2 cut(s) 72, 305
Tsp45I GTSAC 2 cut(s) 88, 146
TspDTI ATGAA 3 cut(s) 17, 78, 174
TspRI CASTG 1 cut(s) 273
VneI GTGCAC 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 231
VspI ATTAAT 1 cut(s) 78
XceI RCATGY 1 cut(s) 290
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.