Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Reverse (-)

9283127 .. 9283863

Gene Structure 737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011416

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTAATTGACACTAGCTTGGGAAATGACTTGGATGATGAAGCAGGGAGACTAGCTAAGGTACTGACCGACATAGATCAAGCCTCTCAAGCTTGGCTATTTGCGCGGATGCCCTTTTCACTTGCCACCTTTATGATTCTTGGTGCACTGCTGATATTTGTCACACATGCAATGAGTACCATTGCTGCATCATTTGTTCAGCTCGGTATTGAGGTTGACAGGTACATCAATGATAAACCTTTAACAGGTATTGCTAAGATCACTGAATTAGATCCGCCACCTAGACGAATCCGACCCACCCAAGAAATCAAACAGCTTCGTCGAATCCAATCGTTGTCACCGCCAAGTAGGGGAGTAGAAAGAAGTGTTGCCACTCTTCCATGTCCAAGGTTCAGGACCACTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.99

Weight (kDa)

9.03

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	106
AciI	CCGC	3 cut(s)	106, 275, 341
AclWI	GGATC	1 cut(s)	266
AfaI	GTAC	3 cut(s)	63, 178, 224
AfiI	CCNNNNNNNGG	2 cut(s)	245, 350
AluBI	AGCT	5 cut(s)	18, 56, 92, 202, 316
AluI	AGCT	5 cut(s)	18, 56, 92, 202, 316
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	43
Alw44I	GTGCAC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	266
ApaLI	GTGCAC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	396
AsuHPI	GGTGA	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	396
BaeGI	GKGCMC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	3 cut(s)	15, 53, 282
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme18I	GGWCC	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	396
BmsI	GCATC	2 cut(s)	99, 197
Bpu10I	CCTNAGC	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 350
Bse3DI	GCAATG	2 cut(s)	177, 180
BseDI	CCNNGG	1 cut(s)	386
BseGI	GGATG	2 cut(s)	40, 114
BseLI	CCNNNNNNNGG	2 cut(s)	245, 350
BseMI	GCAATG	2 cut(s)	177, 180
BseSI	GKGCMC	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	148
BslI	CCNNNNNNNGG	2 cut(s)	245, 350
BsmAI	GTCTC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	76, 258, 271
BspACI	CCGC	3 cut(s)	106, 275, 341
BspFNI	CGCG	1 cut(s)	106
BspPI	GGATC	1 cut(s)	266
BsrDI	GCAATG	2 cut(s)	177, 180
BssECI	CCNNGG	1 cut(s)	386
BssMI	GATC	3 cut(s)	76, 258, 271
BssT1I	CCWWGG	1 cut(s)	386
Bst6I	CTCTTC	1 cut(s)	381
BstDEI	CTNAG	2 cut(s)	57, 255
BstENI	CCTNNNNNAGG	1 cut(s)	243
BstF5I	GGATG	2 cut(s)	40, 114
BstFNI	CGCG	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	3 cut(s)	79, 261, 274
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	3 cut(s)	76, 258, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 103
BstNSI	RCATGY	1 cut(s)	170
BstSLI	GKGCMC	1 cut(s)	148
BstUI	CGCG	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	40, 114
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	2 cut(s)	146, 261
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	396
Csp6I	GTAC	3 cut(s)	62, 177, 223
CviAII	CATG	2 cut(s)	167, 381
CviJI	RGCY	7 cut(s)	18, 56, 83, 92, 97, 202, 316
CviKI_1	RGCY	7 cut(s)	18, 56, 83, 92, 97, 202, 316
CviQI	GTAC	3 cut(s)	62, 177, 223
DdeI	CTNAG	2 cut(s)	57, 255
DpnI	GATC	3 cut(s)	78, 260, 273
DpnII	GATC	3 cut(s)	76, 258, 271
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
EciI	GGCGGA	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	396
EcoNI	CCTNNNNNAGG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	386
FaeI	CATG	2 cut(s)	170, 384
FaiI	YATR	5 cut(s)	74, 134, 168, 382, 406
FatI	CATG	2 cut(s)	166, 380
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	2 cut(s)	47, 121
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	3 cut(s)	15, 53, 282
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	186
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	2 cut(s)	170, 384
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	3 cut(s)	136, 288, 324
HphI	GGTGA	1 cut(s)	330
Hpy166II	GTNNAC	2 cut(s)	146, 217
Hpy188I	TCNGA	1 cut(s)	293
Hpy188III	TCNNGA	1 cut(s)	394
Hpy8I	GTNNAC	2 cut(s)	146, 217
Hpy99I	CGWCG	1 cut(s)	324
HpyCH4V	TGCA	3 cut(s)	146, 170, 188
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 103
HpyF3I	CTNAG	2 cut(s)	57, 255
Hsp92II	CATG	2 cut(s)	170, 384
HspAI	GCGC	1 cut(s)	104
Kzo9I	GATC	3 cut(s)	76, 258, 271
LpnPI	CCDG	4 cut(s)	30, 205, 231, 379
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	2 cut(s)	99, 197
MaeI	CTAG	3 cut(s)	15, 53, 282
MaeIII	GTNAC	2 cut(s)	160, 336
MalI	GATC	3 cut(s)	78, 260, 273
MboI	GATC	3 cut(s)	76, 258, 271
MboII	GAAGA	1 cut(s)	368
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	2 cut(s)	6, 266
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	2 cut(s)	94, 205
MseI	TTAA	1 cut(s)	242
MslI	CAYNNNNRTG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	106
MwoI	GCNNNNNNNGC	2 cut(s)	89, 103
NdeII	GATC	3 cut(s)	76, 258, 271
NlaIII	CATG	2 cut(s)	170, 384
NmuCI	GTSAC	2 cut(s)	160, 336
NspI	RCATGY	1 cut(s)	170
PfeI	GAWTC	3 cut(s)	136, 288, 324
PkrI	GCNGC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	396
PsuI	RGATCY	1 cut(s)	271
RsaI	GTAC	3 cut(s)	63, 178, 224
RsaNI	GTAC	3 cut(s)	62, 177, 223
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	3 cut(s)	76, 258, 271
Sau96I	GGNCC	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	2 cut(s)	99, 197
SinI	GGWCC	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	2 cut(s)	6, 266
SsiI	CCGC	3 cut(s)	106, 275, 341
SspMI	CTAG	3 cut(s)	15, 53, 282
StyI	CCWWGG	1 cut(s)	386
TaqI	TCGA	1 cut(s)	322
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	2 cut(s)	6, 266
TfiI	GAWTC	3 cut(s)	136, 288, 324
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TscAI	CASTG	2 cut(s)	153, 268
TseFI	GTSAC	2 cut(s)	160, 336
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	2 cut(s)	160, 336
TspDTI	ATGAA	1 cut(s)	54
TspRI	CASTG	2 cut(s)	153, 268
VneI	GTGCAC	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	396
XagI	CCTNNNNNAGG	1 cut(s)	243
XceI	RCATGY	1 cut(s)	170
XspI	CTAG	3 cut(s)	15, 53, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.