Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Reverse (-)

60132902 .. 60138881

Gene Structure 5980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG327200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCTTTGCCAGCCTCTCTCCGTCATCGGCACCGAGGAGGTCAGCCTCGCCTCACTGGGCCAGAATCGCGATGCTGAACGCAATTGTGATGACGCCGTCATCCCCAACGGCATCACTACGGACGTCGACCTCACTAGTAGCGCTCCCGAGCTCTACCCCGAACTCGTCATTCTCAACACTGTTCCGTCAATTCTCAGCCACGACAACACCGACGAAGACACTGTGGATGAGATTTTCAAGCTGGTGGATGACAATGCCAGCCAAAACGGTGCATTGGAGCCAATGGAGCCCCCCAAGAATGTGATCAAATCGGAGTTTTTTTGCCAGAAGAAAGGGGTGGAAAAACGACCAGAGCCTCTAAATGGTGGGATCTTTGCAGATGATATGGCTTTAGGTAAGACTCTGACTTTGGCTTCCTCGATTGCTTTTGTTAAATACGGTAGTAGCGATGGCAACAGTGCTAGTGTAGATGAAAGCATACCGTATGATAATGAAATGGGTGAGGATAGCAGTGAAAAGGAAGAATTTGTGAGTGTAACTGATAAGGGTCACCAAAATTGGGGTAAAGATCGATCAGGAAATATGATGCTTGATTTGGCGTACGCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

203

Amino Acids

21.97

Weight (kDa)

4.15

Isoelectric Point (pI)

30.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	29
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	1 cut(s)	69
AclWI	GGATC	1 cut(s)	377
AcsI	RAATTY	1 cut(s)	524
AcyI	GRCGYC	2 cut(s)	93, 123
AfaI	GTAC	1 cut(s)	602
AfeI	AGCGCT	1 cut(s)	142
AfiI	CCNNNNNNNGG	2 cut(s)	362, 559
AgsI	TTSAA	1 cut(s)	238
AhlI	ACTAGT	1 cut(s)	134
AluBI	AGCT	2 cut(s)	151, 241
AluI	AGCT	2 cut(s)	151, 241
Alw21I	GWGCWC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	146
Aor51HI	AGCGCT	1 cut(s)	142
AoxI	GGCC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	524
ArsI	GACNNNNNNTTYG	2 cut(s)	391, 423
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	2 cut(s)	512, 542
AvaI	CYCGRG	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	29
BanII	GRGCYC	2 cut(s)	153, 291
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	153
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	2 cut(s)	80, 124
BclI	TGATCA	1 cut(s)	303
BcuI	ACTAGT	1 cut(s)	134
BfaI	CTAG	2 cut(s)	135, 462
BfoI	RGCGCY	1 cut(s)	144
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	3 cut(s)	31, 279, 288
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	3 cut(s)	61, 120, 576
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	222
Bsa29I	ATCGAT	1 cut(s)	571
BsaHI	GRCGYC	2 cut(s)	93, 123
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 559
Bse1I	ACTGG	1 cut(s)	60
BseCI	ATCGAT	1 cut(s)	571
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	3 cut(s)	99, 232, 253
BseLI	CCNNNNNNNGG	2 cut(s)	362, 559
BseMII	CTCAG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	60
BshNI	GGYRCC	1 cut(s)	29
BshVI	ATCGAT	1 cut(s)	571
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	146
BsiWI	CGTACG	1 cut(s)	600
BslI	CCNNNNNNNGG	2 cut(s)	362, 559
BsnI	GGCC	1 cut(s)	60
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	153, 291
Bsp143I	GATC	4 cut(s)	303, 369, 568, 572
Bsp68I	TCGCGA	1 cut(s)	69
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	207
BspDI	ATCGAT	1 cut(s)	571
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	3 cut(s)	31, 279, 288
BspPI	GGATC	1 cut(s)	377
BspT107I	GGYRCC	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	4 cut(s)	303, 369, 568, 572
BssNI	GRCGYC	2 cut(s)	93, 123
Bst4CI	ACNGT	6 cut(s)	181, 223, 269, 440, 458, 483
BstACI	GRCGYC	2 cut(s)	93, 123
BstC8I	GCNNGC	2 cut(s)	11, 259
BstDEI	CTNAG	1 cut(s)	194
BstEII	GGTNACC	1 cut(s)	548
BstF5I	GGATG	3 cut(s)	99, 232, 253
BstFNI	CGCG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	4 cut(s)	306, 372, 571, 575
BstMBI	GATC	4 cut(s)	303, 369, 568, 572
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 66, 286
BstPI	GGTNACC	1 cut(s)	548
BstUI	CGCG	1 cut(s)	69
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
Bsu15I	ATCGAT	1 cut(s)	571
BsuRI	GGCC	1 cut(s)	60
BsuTUI	ATCGAT	1 cut(s)	571
BtgZI	GCGATG	2 cut(s)	84, 462
BtsCI	GGATG	3 cut(s)	99, 232, 253
BtsI	GCAGTG	1 cut(s)	517
BtsIMutI	CAGTG	5 cut(s)	53, 177, 219, 463, 517
BtuMI	TCGCGA	1 cut(s)	69
Cac8I	GCNNGC	2 cut(s)	11, 259
CfoI	GCGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	58
ClaI	ATCGAT	1 cut(s)	571
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	601
CviQI	GTAC	1 cut(s)	601
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	4 cut(s)	305, 371, 570, 574
DpnII	GATC	4 cut(s)	303, 369, 568, 572
Ecl136II	GAGCTC	1 cut(s)	151
Eco24I	GRGCYC	2 cut(s)	153, 291
Eco47III	AGCGCT	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	146
Eco91I	GGTNACC	1 cut(s)	548
EcoICRI	GAGCTC	1 cut(s)	151
EcoO65I	GGTNACC	1 cut(s)	548
EcoT38I	GRGCYC	2 cut(s)	153, 291
FaiI	YATR	4 cut(s)	386, 479, 486, 584
FbaI	TGATCA	1 cut(s)	303
FblI	GTMKAC	1 cut(s)	126
FokI	GGATG	3 cut(s)	86, 239, 260
FriOI	GRGCYC	2 cut(s)	153, 291
FspBI	CTAG	2 cut(s)	135, 462
GlaI	GCGC	1 cut(s)	142
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	60
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	2 cut(s)	93, 123
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	2 cut(s)	64, 400
HphI	GGTGA	2 cut(s)	512, 542
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	313, 405
Hpy188III	TCNNGA	3 cut(s)	68, 146, 576
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	2 cut(s)	128, 215
HpyCH4III	ACNGT	6 cut(s)	181, 223, 269, 440, 458, 483
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	272, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 66, 286
HpyF3I	CTNAG	1 cut(s)	194
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	2 cut(s)	93, 123
HspAI	GCGC	1 cut(s)	141
Ksp22I	TGATCA	1 cut(s)	303
Kzo9I	GATC	4 cut(s)	303, 369, 568, 572
LmnI	GCTCC	3 cut(s)	148, 277, 286
LpnPI	CCDG	8 cut(s)	23, 41, 74, 227, 271, 338, 363, 561
LweI	GCATC	3 cut(s)	61, 120, 576
MaeI	CTAG	2 cut(s)	135, 462
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	535, 548
MalI	GATC	4 cut(s)	305, 371, 570, 574
MboI	GATC	4 cut(s)	303, 369, 568, 572
MboII	GAAGA	3 cut(s)	227, 340, 533
MfeI	CAATTG	1 cut(s)	82
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	2 cut(s)	153, 291
MluCI	AATT	4 cut(s)	82, 189, 524, 556
MlyI	GAGTC	1 cut(s)	394
MnlI	CCTC	9 cut(s)	24, 28, 31, 56, 61, 140, 366, 427, 496
MseI	TTAA	2 cut(s)	432, 610
MunI	CAATTG	1 cut(s)	82
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	3 cut(s)	10, 66, 286
NdeII	GATC	4 cut(s)	303, 369, 568, 572
NlaIV	GGNNCC	3 cut(s)	31, 279, 288
NmuCI	GTSAC	1 cut(s)	548
NruI	TCGCGA	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 444
PfeI	GAWTC	1 cut(s)	64
Pfl23II	CGTACG	1 cut(s)	600
PflFI	GACNNNGTC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
Psp124BI	GAGCTC	1 cut(s)	153
PspEI	GGTNACC	1 cut(s)	548
PspLI	CGTACG	1 cut(s)	600
PspN4I	GGNNCC	3 cut(s)	31, 279, 288
PspPI	GGNCC	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	369
PsyI	GACNNNGTC	1 cut(s)	95
RruI	TCGCGA	1 cut(s)	69
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
SacI	GAGCTC	1 cut(s)	153
SalI	GTCGAC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	432, 610
Sau3AI	GATC	4 cut(s)	303, 369, 568, 572
Sau96I	GGNCC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	394
SduI	GDGCHC	2 cut(s)	153, 291
SetI	ASST	6 cut(s)	42, 126, 132, 153, 243, 397
SfaNI	GCATC	3 cut(s)	61, 120, 576
SpeI	ACTAGT	1 cut(s)	134
Sse9I	AATT	4 cut(s)	82, 189, 524, 556
SspMI	CTAG	2 cut(s)	135, 462
SstI	GAGCTC	1 cut(s)	153
TaaI	ACNGT	6 cut(s)	181, 223, 269, 440, 458, 483
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	126, 419, 571
TasI	AATT	4 cut(s)	82, 189, 524, 556
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	2 cut(s)	432, 610
Tru9I	TTAA	2 cut(s)	432, 610
TscAI	CASTG	5 cut(s)	60, 184, 226, 463, 517
TseFI	GTSAC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	2 cut(s)	486, 507
TspGWI	ACGGA	3 cut(s)	10, 134, 174
TspRI	CASTG	5 cut(s)	60, 184, 226, 463, 517
Tth111I	GACNNNGTC	1 cut(s)	95
XapI	RAATTY	1 cut(s)	524
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	2 cut(s)	135, 462
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.