Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000103.1

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Reverse (-)

55865 .. 56224

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000103.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgggccatggtgagctccttctctccaagcccgccgccaaggaggtcaacctcgccggcgaatctgcaacatctgaccaccaccaggtgaagcaggatgtaacagttgagggaaaagatgacttgatgagagatgacaaagaagatgacatcgcacaagtagaagaggaagacaaagaaagagagcttgaagagatgagtgtccatgtttcaagttctaacgtggagcatgaggctacagagtgtgttggagcaagaccggtggacatcctaggtgtggaagtgaaaattgccggtatcaatgagtatgcgcacgatgtggtacatttgcaagaaatgtttaagaagggggttaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

119

Amino Acids

13.16

Weight (kDa)

4.65

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	312
AciI	CCGC	2 cut(s)	33, 36
AdeI	CACNNNGTG	2 cut(s)	88, 319
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	2 cut(s)	85, 277
AgeI	ACCGGT	1 cut(s)	259
AgsI	TTSAA	2 cut(s)	191, 213
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	2 cut(s)	16, 187
AluI	AGCT	2 cut(s)	16, 187
Alw21I	GWGCWC	1 cut(s)	18
AoxI	GGCC	1 cut(s)	4
AsiGI	ACCGGT	1 cut(s)	259
AspA2I	CCTAGG	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	23, 100
AvrII	CCTAGG	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	18
BciT130I	CCWGG	1 cut(s)	86
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	237
BisI	GCNGC	1 cut(s)	36
BlnI	CCTAGG	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	7, 39, 271
BsaWI	WCCGGW	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 277
Bse118I	RCCGGY	3 cut(s)	56, 259, 293
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	3 cut(s)	7, 39, 271
BseGI	GGATG	2 cut(s)	103, 267
BseLI	CCNNNNNNNGG	2 cut(s)	85, 277
BshFI	GGCC	1 cut(s)	6
BshTI	ACCGGT	1 cut(s)	259
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	3 cut(s)	57, 260, 294
BslI	CCNNNNNNNGG	2 cut(s)	85, 277
BsnI	GGCC	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp19I	CCATGG	1 cut(s)	7
BspACI	CCGC	2 cut(s)	33, 36
BspANI	GGCC	1 cut(s)	6
BsrFI	RCCGGY	3 cut(s)	56, 259, 293
BssAI	RCCGGY	3 cut(s)	56, 259, 293
BssECI	CCNNGG	3 cut(s)	7, 39, 271
BssT1I	CCWWGG	3 cut(s)	7, 39, 271
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	2 cut(s)	159, 186
BstC8I	GCNNGC	2 cut(s)	33, 58
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	2 cut(s)	103, 267
BstHHI	GCGC	1 cut(s)	313
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	237
BstV2I	GAAGAC	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	7
BtgZI	GCGATG	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	103, 267
Cac8I	GCNNGC	2 cut(s)	33, 58
CfoI	GCGC	1 cut(s)	313
Cfr10I	RCCGGY	3 cut(s)	56, 259, 293
Cfr13I	GGNCC	1 cut(s)	4
CsiI	ACCWGGT	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	323
CspAI	ACCGGT	1 cut(s)	259
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	3 cut(s)	8, 206, 230
CviJI	RGCY	5 cut(s)	6, 16, 31, 187, 236
CviKI_1	RGCY	5 cut(s)	6, 16, 31, 187, 236
CviQI	GTAC	1 cut(s)	323
DraIII	CACNNNGTG	2 cut(s)	88, 319
Eam1104I	CTCTTC	2 cut(s)	159, 186
EarI	CTCTTC	2 cut(s)	159, 186
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	3 cut(s)	7, 39, 271
Eco24I	GRGCYC	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	84
EcoT14I	CCWWGG	3 cut(s)	7, 39, 271
EcoT38I	GRGCYC	1 cut(s)	18
ErhI	CCWWGG	3 cut(s)	7, 39, 271
FaeI	CATG	3 cut(s)	11, 209, 233
FaiI	YATR	4 cut(s)	9, 207, 231, 309
FatI	CATG	3 cut(s)	7, 205, 229
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	2 cut(s)	110, 254
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	36
FspAI	RTGCGCAY	1 cut(s)	312
FspBI	CTAG	1 cut(s)	272
FspI	TGCGCA	1 cut(s)	312
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	6
HapII	CCGG	3 cut(s)	57, 260, 294
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	3 cut(s)	11, 209, 233
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	3 cut(s)	57, 260, 294
HphI	GGTGA	2 cut(s)	23, 100
Hpy166II	GTNNAC	2 cut(s)	49, 265
Hpy188I	TCNGA	1 cut(s)	76
Hpy8I	GTNNAC	2 cut(s)	49, 265
HpyAV	CCTTC	2 cut(s)	29, 340
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	2 cut(s)	68, 331
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	11, 209, 233
HspAI	GCGC	1 cut(s)	311
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
LmnI	GCTCC	3 cut(s)	21, 226, 251
LpnPI	CCDG	6 cut(s)	70, 71, 80, 98, 273, 307
MabI	ACCWGGT	1 cut(s)	84
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	100
MboII	GAAGA	4 cut(s)	155, 176, 182, 203
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	1 cut(s)	288
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	5 cut(s)	37, 62, 103, 160, 226
MreI	CGCCGGCG	1 cut(s)	56
MroNI	GCCGGC	1 cut(s)	56
MseI	TTAA	2 cut(s)	342, 354
MspI	CCGG	3 cut(s)	57, 260, 294
MspR9I	CCNGG	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	86
NaeI	GCCGGC	1 cut(s)	58
NcoI	CCATGG	1 cut(s)	7
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	3 cut(s)	11, 209, 233
NsbI	TGCGCA	1 cut(s)	312
PdiI	GCCGGC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	62
PinAI	ACCGGT	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	37
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SacI	GAGCTC	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	342, 354
SatI	GCNGC	1 cut(s)	36
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	7 cut(s)	18, 48, 54, 90, 189, 225, 277
SexAI	ACCWGGT	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	237
SgrAI	CRCCGGYG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	2 cut(s)	33, 36
SspMI	CTAG	1 cut(s)	272
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	3 cut(s)	7, 39, 271
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	1 cut(s)	225
TasI	AATT	1 cut(s)	288
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	2 cut(s)	342, 354
Tru9I	TTAA	2 cut(s)	342, 354
XmaJI	CCTAGG	1 cut(s)	271
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.