RchiOBHm_Chr3g0488451

AAA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0003456
Physical Location & Seq
Forward (+)
36130739 .. 36131635
897 bp
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UTR
Exon/CDS
Intron
PRQ45280

Sequence Viewer

Length: 405 bp
ATGTCTAGTCTCCGCCATGCTATCCTTGTAGGAGATGAGAGGCAACTCCCTGCAATGGTTAAAAGCGAGATTGCAGCAAGTGCTGATTTTGGGAGAAGTTTGTTTGGAAGGCTGGCAAAGTTGGGATACAAGAAGCACCTACTCAATGTCCAGTACATGGGATGCATCCATCCGTCATGCAGGGCGGTGGGATCTCCGGCGCTTGTTATCTCACACATCCGTCTCACCCTCACGGTAGCCCTAGCTACCCACCACCTCCTCCTTCATTTCCATTCCAACCGAGTTACTCACCACCACCACCACGCCAAACAATCATTAATGGGTATGTTTTCTTTCATCAATTTCCATCAACCCATACTCACCATTCACCTGATTCTACCGCAAATACCCATCGATTTCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12

Protein Analysis

134

Amino Acids

15.04

Weight (kDa)

10.14

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 157
AciI CCGC 3 cut(s) 13, 185, 380
AclWI GGATC 1 cut(s) 199
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 2 cut(s) 55, 157
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw26I GTCTC 2 cut(s) 14, 227
AlwI GGATC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 74
AseI ATTAAT 1 cut(s) 317
AspLEI GCGC 1 cut(s) 202
AsuHPI GGTGA 4 cut(s) 217, 281, 352, 359
BbvI GCAGC 1 cut(s) 86
BccI CCATC 3 cut(s) 177, 354, 398
BciVI GTATCC 1 cut(s) 119
BcoDI GTCTC 2 cut(s) 14, 227
BfaI CTAG 2 cut(s) 6, 242
BfoI RGCGCY 1 cut(s) 203
BfuI GTATCC 1 cut(s) 119
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmsI GCATC 2 cut(s) 152, 174
Bsa29I ATCGAT 1 cut(s) 393
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 157
Bse1I ACTGG 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 60
BseCI ATCGAT 1 cut(s) 393
BseGI GGATG 4 cut(s) 165, 167, 169, 216
BseLI CCNNNNNNNGG 2 cut(s) 55, 157
BseMI GCAATG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 86
BshVI ATCGAT 1 cut(s) 393
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 2 cut(s) 55, 157
BsmAI GTCTC 2 cut(s) 14, 227
BsmBI CGTCTC 1 cut(s) 227
Bsp143I GATC 1 cut(s) 191
BspACI CCGC 3 cut(s) 13, 185, 380
BspDI ATCGAT 1 cut(s) 393
BspPI GGATC 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 60
BsrI ACTGG 1 cut(s) 151
BssMI GATC 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 235
BstAPI GCANNNNNTGC 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 114
BstF5I GGATG 4 cut(s) 165, 167, 169, 216
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 1 cut(s) 194
BstMAI GTCTC 2 cut(s) 14, 227
BstMBI GATC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
Bsu15I ATCGAT 1 cut(s) 393
BsuI GTATCC 1 cut(s) 119
BsuTUI ATCGAT 1 cut(s) 393
BtsCI GGATG 4 cut(s) 165, 167, 169, 216
Cac8I GCNNGC 1 cut(s) 114
CfoI GCGC 1 cut(s) 202
ClaI ATCGAT 1 cut(s) 393
Csp6I GTAC 1 cut(s) 154
CviAII CATG 3 cut(s) 17, 157, 177
CviJI RGCY 3 cut(s) 112, 239, 245
CviKI_1 RGCY 3 cut(s) 112, 239, 245
CviQI GTAC 1 cut(s) 154
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
EcoT22I ATGCAT 1 cut(s) 167
Esp3I CGTCTC 1 cut(s) 227
FaeI CATG 3 cut(s) 20, 160, 180
FaiI YATR 6 cut(s) 18, 158, 178, 326, 356, 403
FatI CATG 3 cut(s) 16, 156, 176
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 4 cut(s) 152, 156, 174, 203
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 2 cut(s) 6, 242
GlaI GCGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 75
HaeII RGCGCY 1 cut(s) 203
HapII CCGG 1 cut(s) 197
HhaI GCGC 1 cut(s) 202
Hin1II CATG 3 cut(s) 20, 160, 180
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HinfI GANTC 1 cut(s) 373
HpaII CCGG 1 cut(s) 197
HphI GGTGA 4 cut(s) 217, 281, 352, 359
HpyAV CCTTC 2 cut(s) 102, 272
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 4 cut(s) 53, 74, 165, 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
Hsp92II CATG 3 cut(s) 20, 160, 180
HspAI GCGC 1 cut(s) 200
Kzo9I GATC 1 cut(s) 191
LpnPI CCDG 6 cut(s) 63, 98, 164, 166, 210, 383
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 2 cut(s) 152, 174
MaeI CTAG 2 cut(s) 6, 242
MaeIII GTNAC 1 cut(s) 283
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MflI RGATCY 1 cut(s) 191
MluCI AATT 1 cut(s) 340
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 4 cut(s) 33, 239, 266, 269
Mph1103I ATGCAT 1 cut(s) 167
MseI TTAA 2 cut(s) 60, 317
MspI CCGG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 1 cut(s) 191
NlaIII CATG 3 cut(s) 20, 160, 180
NsiI ATGCAT 1 cut(s) 167
PfeI GAWTC 1 cut(s) 373
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 1 cut(s) 76
PshBI ATTAAT 1 cut(s) 317
PsuI RGATCY 1 cut(s) 191
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SaqAI TTAA 2 cut(s) 60, 317
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 191
SetI ASST 4 cut(s) 141, 247, 258, 372
SfaNI GCATC 2 cut(s) 152, 174
Sse9I AATT 1 cut(s) 340
SsiI CCGC 3 cut(s) 13, 185, 380
SspMI CTAG 2 cut(s) 6, 242
TaaI ACNGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 393
TasI AATT 1 cut(s) 340
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 1 cut(s) 373
Tru1I TTAA 2 cut(s) 60, 317
Tru9I TTAA 2 cut(s) 60, 317
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 2 cut(s) 254, 325
TspGWI ACGGA 2 cut(s) 162, 209
Van91I CCANNNNNTGG 1 cut(s) 157
VspI ATTAAT 1 cut(s) 317
XspI CTAG 2 cut(s) 6, 242
Zsp2I ATGCAT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.