Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8182286.1

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Reverse (-)

394 .. 639

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8182286.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

atgctttgccagctttcctccgtcatcggcaccaaggaggtcggccttgcctcactcggtcggaatcccgatgaggaatgcagacgcgatgacgccgtcgtccccaaaggcaccgctaatggcgtcaacctccccagcactcccgagctttaccccgaattcgtcagcctcaacactattccgtcaaatctgaacctcctcagccatgacagcaccgacattgcaatcgacgtcgtttcatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CTNNBL

Protein Analysis

81

Amino Acids

8.58

Weight (kDa)

4.33

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	98
AatII	GACGTC	1 cut(s)	234
AccB1I	GGYRCC	2 cut(s)	29, 110
AccII	CGCG	1 cut(s)	87
AciI	CCGC	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	158
AcyI	GRCGYC	3 cut(s)	93, 123, 231
AluBI	AGCT	2 cut(s)	13, 148
AluI	AGCT	2 cut(s)	13, 148
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	143
BanI	GGYRCC	2 cut(s)	29, 110
BbvCI	CCTCAGC	1 cut(s)	200
BceAI	ACGGC	1 cut(s)	80
BmeT110I	CYCGRG	1 cut(s)	143
BmiI	GGNNCC	2 cut(s)	31, 112
Bpu10I	CCTNAGC	1 cut(s)	200
BsaHI	GRCGYC	3 cut(s)	93, 123, 231
BsaJI	CCNNGG	1 cut(s)	33
Bse3DI	GCAATG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	33
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	188
BseYI	CCCAGC	1 cut(s)	134
Bsh1236I	CGCG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	45
BshNI	GGYRCC	2 cut(s)	29, 110
BsiEI	CGRYCG	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	45
BsoBI	CYCGRG	1 cut(s)	143
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	31, 112
BspT107I	GGYRCC	2 cut(s)	29, 110
BsrDI	GCAATG	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	33
BssNI	GRCGYC	3 cut(s)	93, 123, 231
BssT1I	CCWWGG	1 cut(s)	33
BstACI	GRCGYC	3 cut(s)	93, 123, 231
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	2 cut(s)	200, 243
BstFNI	CGCG	1 cut(s)	87
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 210
BstUI	CGCG	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	11
CseI	GACGC	3 cut(s)	93, 101, 112
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	5 cut(s)	13, 45, 148, 168, 204
CviKI_1	RGCY	5 cut(s)	13, 45, 148, 168, 204
DdeI	CTNAG	2 cut(s)	200, 243
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	1 cut(s)	209
FaiI	YATR	1 cut(s)	207
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	1 cut(s)	205
GsaI	CCCAGC	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	45
HgaI	GACGC	3 cut(s)	93, 101, 112
Hin1I	GRCGYC	3 cut(s)	93, 123, 231
Hin1II	CATG	1 cut(s)	209
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	63, 192
Hpy188III	TCNNGA	2 cut(s)	68, 143
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	3 cut(s)	101, 233, 236
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	81, 224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 210
HpyF3I	CTNAG	2 cut(s)	200, 243
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	3 cut(s)	93, 123, 231
Hsp92II	CATG	1 cut(s)	209
LpnPI	CCDG	2 cut(s)	23, 148
MaeII	ACGT	1 cut(s)	231
MluCI	AATT	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	8 cut(s)	28, 31, 61, 67, 140, 179, 206, 209
Mva1269I	GAATGC	1 cut(s)	83
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	10, 210
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	2 cut(s)	31, 112
PctI	GAATGC	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	64
PflFI	GACNNNGTC	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	134
PspN4I	GGNNCC	2 cut(s)	31, 112
PsyI	GACNNNGTC	1 cut(s)	95
SetI	ASST	6 cut(s)	15, 42, 132, 150, 198, 234
Sse9I	AATT	1 cut(s)	158
SsiI	CCGC	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	33
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	228
TaqII	GACCGA	1 cut(s)	47
TasI	AATT	1 cut(s)	158
TfiI	GAWTC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	228
TspGWI	ACGGA	2 cut(s)	10, 171
Tth111I	GACNNNGTC	1 cut(s)	95
XapI	RAATTY	1 cut(s)	158
ZraI	GACGTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.