Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Forward (+)

2363054 .. 2364058

Gene Structure 1005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36045

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGTTGTTGGCTGTTGTAAAGAAATTGTTCACACTTGGTTGTCAAAATTTCCAGCAGTTCAATTTTGCAGTTTAAGCGATGATGCATTTGGAGATATTGCTGGTATGGAATCTGATCTTTTCAGTTCATATGCTGAATCATTTTGTGCTGCTCTAGTTGTTGCTTCCATTTCCTCATTTGTAATCCACCATAAGTTCACCGCCATGCTGTACCCCCTCCGTGTTAGTTCTATGGGCATAAATGATGTTTGGTCGCAATATGTTGATGGCGCCATAGTGACTACAGCACAACTGGAATCAATCTCTGAGAACCAAGGGAATGGAGTCGTAATTGAGAAAATGGAGAGCTCCAATCTCCTATTTAAGGAACTGGATGTTACTGACAGGAACATAATTACTCATCTTTCAAAAGACTCTGAGCTCCCACGCAAAGTTGAAGACACGGATTGTTATTGGAAATGGTTTGCTAGTAACTTGGCCTCAGGAGGTGCTTCTTCTCTTCTCTTTGTCTACTCCTTGTACTATGCTTGTACCCATTTGGCTCGTGATTCTAAGGCTACAAAGAAGGGAGGAGAACGACAATTCAATGGTCTGGTTGATGTCTGTAGGAAGACATTGAAATCTGATGGTATTGCAGGTCTATATCATGGATCCATTATATCATGTGTTGAAGCAATTATGGTGATTAAAGCAATGCCAGAGAGAAGACTGGTTTCTCCTGAAGTCCTAGGGGTTCACTTTCTTTTTCTTACATGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

253

Amino Acids

27.92

Weight (kDa)

5.63

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	28 - 87	1.4e-07	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	626
AccB1I	GGYRCC	1 cut(s)	269
AccI	GTMKAC	1 cut(s)	510
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	2 cut(s)	645, 658
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	741
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	3 cut(s)	212, 521, 532
AfiI	CCNNNNNNNGG	1 cut(s)	364
AflIII	ACRYGT	1 cut(s)	752
AgsI	TTSAA	6 cut(s)	62, 408, 437, 586, 619, 671
AluBI	AGCT	2 cut(s)	348, 421
AluI	AGCT	2 cut(s)	348, 421
Alw21I	GWGCWC	2 cut(s)	350, 423
AlwI	GGATC	2 cut(s)	645, 658
AoxI	GGCC	1 cut(s)	477
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	27
AspA2I	CCTAGG	1 cut(s)	727
AspLEI	GCGC	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	190, 694
AvrII	CCTAGG	1 cut(s)	727
AxyI	CCTNAGG	1 cut(s)	481
BamHI	GGATCC	1 cut(s)	650
BanI	GGYRCC	1 cut(s)	269
BanII	GRGCYC	2 cut(s)	350, 423
BauI	CACGAG	1 cut(s)	543
BbsI	GAAGAC	3 cut(s)	444, 617, 712
Bbv12I	GWGCWC	2 cut(s)	350, 423
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	2 cut(s)	260, 620
BfaI	CTAG	3 cut(s)	155, 468, 728
BfmI	CTRYAG	2 cut(s)	282, 604
BfoI	RGCGCY	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	626
BisI	GCNGC	1 cut(s)	150
BlnI	CCTAGG	1 cut(s)	727
BlsI	GCNGC	1 cut(s)	151
BmiI	GGNNCC	2 cut(s)	271, 652
BmsI	GCATC	1 cut(s)	73
BpiI	GAAGAC	3 cut(s)	444, 617, 712
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	2 cut(s)	313, 727
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	3 cut(s)	297, 375, 714
Bse21I	CCTNAGG	1 cut(s)	481
Bse3DI	GCAATG	1 cut(s)	699
BseDI	CCNNGG	2 cut(s)	313, 727
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	3 cut(s)	297, 408, 495
BseNI	ACTGG	3 cut(s)	297, 375, 714
BseRI	GAGGAG	1 cut(s)	585
BseXI	GCAGC	1 cut(s)	136
BshFI	GGCC	1 cut(s)	479
BshNI	GGYRCC	1 cut(s)	269
BsiHKAI	GWGCWC	2 cut(s)	350, 423
BslI	CCNNNNNNNGG	1 cut(s)	364
BsnI	GGCC	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	350, 423
Bsp143I	GATC	2 cut(s)	115, 650
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	479
BspCNI	CTCAG	3 cut(s)	298, 409, 494
BspLI	GGNNCC	2 cut(s)	271, 652
BspMI	ACCTGC	1 cut(s)	626
BspPI	GGATC	2 cut(s)	645, 658
BspT107I	GGYRCC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	699
BsrI	ACTGG	3 cut(s)	297, 375, 714
BssECI	CCNNGG	2 cut(s)	313, 727
BssMI	GATC	2 cut(s)	115, 650
BssNI	GRCGYC	1 cut(s)	270
BssSI	CACGAG	1 cut(s)	543
BssT1I	CCWWGG	2 cut(s)	313, 727
Bst2BI	CACGAG	1 cut(s)	543
Bst6I	CTCTTC	1 cut(s)	504
BstACI	GRCGYC	1 cut(s)	270
BstDEI	CTNAG	4 cut(s)	306, 417, 481, 552
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	379
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	2 cut(s)	118, 653
BstMBI	GATC	2 cut(s)	115, 650
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	756
BstSFI	CTRYAG	2 cut(s)	282, 604
BstV1I	GCAGC	1 cut(s)	136
BstV2I	GAAGAC	3 cut(s)	444, 617, 712
BstX2I	RGATCY	1 cut(s)	650
BstXI	CCANNNNNNTGG	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	650
Bsu36I	CCTNAGG	1 cut(s)	481
BsuRI	GGCC	1 cut(s)	479
BtgZI	GCGATG	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	379
BveI	ACCTGC	1 cut(s)	626
CfoI	GCGC	1 cut(s)	272
Csp6I	GTAC	3 cut(s)	211, 520, 531
CviAII	CATG	4 cut(s)	205, 647, 663, 753
CviJI	RGCY	6 cut(s)	12, 348, 421, 479, 542, 557
CviKI_1	RGCY	6 cut(s)	12, 348, 421, 479, 542, 557
CviQI	GTAC	3 cut(s)	211, 520, 531
DdeI	CTNAG	4 cut(s)	306, 417, 481, 552
DinI	GGCGCC	1 cut(s)	271
DpnI	GATC	2 cut(s)	117, 652
DpnII	GATC	2 cut(s)	115, 650
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
Ecl136II	GAGCTC	2 cut(s)	348, 421
Eco130I	CCWWGG	2 cut(s)	313, 727
Eco24I	GRGCYC	2 cut(s)	350, 423
Eco53kI	GAGCTC	2 cut(s)	348, 421
Eco57I	CTGAAG	1 cut(s)	741
Eco81I	CCTNAGG	1 cut(s)	481
EcoICRI	GAGCTC	2 cut(s)	348, 421
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoT14I	CCWWGG	2 cut(s)	313, 727
EcoT22I	ATGCAT	1 cut(s)	88
EcoT38I	GRGCYC	2 cut(s)	350, 423
EgeI	GGCGCC	1 cut(s)	271
EheI	GGCGCC	1 cut(s)	271
ErhI	CCWWGG	2 cut(s)	313, 727
FaeI	CATG	4 cut(s)	208, 650, 666, 756
FatI	CATG	4 cut(s)	204, 646, 662, 752
FauNDI	CATATG	1 cut(s)	130
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	386
FriOI	GRGCYC	2 cut(s)	350, 423
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	3 cut(s)	155, 468, 728
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	1 cut(s)	150
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	479
HhaI	GCGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	4 cut(s)	208, 650, 666, 756
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HinfI	GANTC	6 cut(s)	110, 137, 296, 324, 413, 548
HphI	GGTGA	2 cut(s)	190, 694
Hpy166II	GTNNAC	4 cut(s)	31, 198, 511, 736
Hpy188I	TCNGA	4 cut(s)	115, 307, 418, 625
Hpy188III	TCNNGA	3 cut(s)	483, 545, 719
Hpy8I	GTNNAC	4 cut(s)	31, 198, 511, 736
HpyAV	CCTTC	1 cut(s)	559
HpyCH4V	TGCA	3 cut(s)	69, 86, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	4 cut(s)	306, 417, 481, 552
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	4 cut(s)	208, 650, 666, 756
HspAI	GCGC	1 cut(s)	270
KasI	GGCGCC	1 cut(s)	269
Kzo9I	GATC	2 cut(s)	115, 650
LmnI	GCTCC	2 cut(s)	353, 426
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	3 cut(s)	155, 468, 728
MaeIII	GTNAC	3 cut(s)	277, 376, 470
MalI	GATC	2 cut(s)	117, 652
MboI	GATC	2 cut(s)	115, 650
MboII	GAAGA	5 cut(s)	449, 486, 491, 622, 717
MflI	RGATCY	1 cut(s)	650
MhlI	GDGCHC	2 cut(s)	350, 423
MluCI	AATT	7 cut(s)	24, 47, 62, 330, 393, 581, 675
Mly113I	GGCGCC	1 cut(s)	270
MlyI	GAGTC	2 cut(s)	333, 407
MnlI	CCTC	5 cut(s)	184, 227, 479, 490, 563
Mph1103I	ATGCAT	1 cut(s)	88
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	4 cut(s)	74, 363, 687, 760
MslI	CAYNNNNRTG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	75
NarI	GGCGCC	1 cut(s)	270
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	2 cut(s)	115, 650
NlaIII	CATG	4 cut(s)	208, 650, 666, 756
NlaIV	GGNNCC	2 cut(s)	271, 652
NmuCI	GTSAC	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	88
NspI	RCATGY	1 cut(s)	756
PciI	ACATGT	1 cut(s)	752
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	4 cut(s)	110, 137, 296, 548
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	2 cut(s)	332, 407
PluTI	GGCGCC	1 cut(s)	273
PpsI	GAGTC	2 cut(s)	332, 407
PscI	ACATGT	1 cut(s)	752
Psp124BI	GAGCTC	2 cut(s)	350, 423
PspN4I	GGNNCC	2 cut(s)	271, 652
PsuI	RGATCY	1 cut(s)	650
RsaI	GTAC	3 cut(s)	212, 521, 532
RsaNI	GTAC	3 cut(s)	211, 520, 531
RseI	CAYNNNNRTG	1 cut(s)	203
SacI	GAGCTC	2 cut(s)	350, 423
SaqAI	TTAA	4 cut(s)	74, 363, 687, 760
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	2 cut(s)	115, 650
SchI	GAGTC	2 cut(s)	333, 407
SduI	GDGCHC	2 cut(s)	350, 423
SetI	ASST	4 cut(s)	350, 423, 490, 640
SfaNI	GCATC	1 cut(s)	73
SfcI	CTRYAG	2 cut(s)	282, 604
SfoI	GGCGCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	203
Sse9I	AATT	7 cut(s)	24, 47, 62, 330, 393, 581, 675
SsiI	CCGC	1 cut(s)	201
SspDI	GGCGCC	1 cut(s)	269
SspMI	CTAG	3 cut(s)	155, 468, 728
SstI	GAGCTC	2 cut(s)	350, 423
StyI	CCWWGG	2 cut(s)	313, 727
TasI	AATT	7 cut(s)	24, 47, 62, 330, 393, 581, 675
TatI	WGTACW	1 cut(s)	519
TfiI	GAWTC	4 cut(s)	110, 137, 296, 548
Tru1I	TTAA	4 cut(s)	74, 363, 687, 760
Tru9I	TTAA	4 cut(s)	74, 363, 687, 760
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	2 cut(s)	209, 458
XagI	CCTNNNNNAGG	1 cut(s)	362
XapI	RAATTY	1 cut(s)	47
XceI	RCATGY	1 cut(s)	756
XmaJI	CCTAGG	1 cut(s)	727
XmiI	GTMKAC	1 cut(s)	510
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	3 cut(s)	155, 468, 728
Zsp2I	ATGCAT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.