Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Reverse (-)

21125946 .. 21126866

Gene Structure 921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37432

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCTACGATCCTGGGGATCGTAACAACTGGTATCAGAGCCCGCAACTGGGCCTGTTTCCGGTGCGTCTGGCGGGGTACGGTGGTGGGATCTCCGGTGCTTGTTACCTCACACATTCGTCTCACCCTCACAGTAGCCCTAGCTACCCACTTCCTCCTCCATTTCCACTCCAACCGAGTTACTCACCACCGCCACCACCACCTTCCTAAACAATCATTAATGGGTATGTTTTCCCTCATCAATTTCCCTGTGTTTCTCATACTCATGCACAGTTCAGCCCTCCTCCTCAATTGCAACCTATTTATCCTACTGCTCAATAGTCGCTCACCACCACTCCTCAAAGTCCATCAATCCCTCATTCTAACCCAAATCCATGGATATATCCCCCGATTTCACAAAGCCATTCCTGTGACCCTCATTCTCAGTTCGTCTCCACCAAACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.65

Weight (kDa)

11.91

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	43, 73, 190
AclWI	GGATC	3 cut(s)	4, 26, 97
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	3 cut(s)	48, 49, 60
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
Alw26I	GTCTC	2 cut(s)	125, 435
AlwI	GGATC	3 cut(s)	4, 26, 97
AoxI	GGCC	1 cut(s)	51
AseI	ATTAAT	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	51
AsuHPI	GGTGA	3 cut(s)	115, 176, 318
BaeI	ACNNNNGTAYC	2 cut(s)	69, 102
BanII	GRGCYC	1 cut(s)	43
BccI	CCATC	1 cut(s)	354
BciT130I	CCWGG	1 cut(s)	14
BcoDI	GTCTC	2 cut(s)	125, 435
BfaI	CTAG	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	14
BmrI	ACTGGG	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	13, 373
BsaWI	WCCGGW	2 cut(s)	60, 94
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 49, 60
Bse1I	ACTGG	2 cut(s)	34, 53
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	13, 373
BseLI	CCNNNNNNNGG	3 cut(s)	48, 49, 60
BseMII	CTCAG	1 cut(s)	436
BseNI	ACTGG	2 cut(s)	34, 53
BseRI	GAGGAG	4 cut(s)	146, 272, 275, 326
BshFI	GGCC	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	61, 95
BslI	CCNNNNNNNGG	3 cut(s)	48, 49, 60
BsmAI	GTCTC	2 cut(s)	125, 435
BsmBI	CGTCTC	2 cut(s)	125, 435
BsnI	GGCC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	3 cut(s)	9, 18, 89
Bsp19I	CCATGG	1 cut(s)	373
BspACI	CCGC	3 cut(s)	43, 73, 190
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	435
BspPI	GGATC	3 cut(s)	4, 26, 97
BsrI	ACTGG	2 cut(s)	34, 53
BssECI	CCNNGG	2 cut(s)	13, 373
BssMI	GATC	3 cut(s)	9, 18, 89
BssT1I	CCWWGG	1 cut(s)	373
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	3 cut(s)	82, 133, 272
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	422
BstDSI	CCRYGG	1 cut(s)	373
BstKTI	GATC	3 cut(s)	12, 21, 92
BstMAI	GTCTC	2 cut(s)	125, 435
BstMBI	GATC	3 cut(s)	9, 18, 89
BstNI	CCWGG	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	89
BstXI	CCANNNNNNTGG	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	53
BtgI	CCRYGG	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	51
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	3 cut(s)	265, 374, 444
CviJI	RGCY	7 cut(s)	5, 41, 53, 137, 143, 278, 401
CviKI_1	RGCY	7 cut(s)	5, 41, 53, 137, 143, 278, 401
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	1 cut(s)	422
DpnI	GATC	3 cut(s)	11, 20, 91
DpnII	GATC	3 cut(s)	9, 18, 89
Eco130I	CCWWGG	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	373
Esp3I	CGTCTC	2 cut(s)	125, 435
FaeI	CATG	3 cut(s)	268, 377, 447
FaiI	YATR	6 cut(s)	227, 260, 266, 375, 381, 445
FatI	CATG	3 cut(s)	264, 373, 443
FauI	CCCGC	2 cut(s)	50, 66
FriOI	GRGCYC	1 cut(s)	43
FspBI	CTAG	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	2 cut(s)	61, 95
HgaI	GACGC	1 cut(s)	55
Hin1II	CATG	3 cut(s)	268, 377, 447
HpaII	CCGG	2 cut(s)	61, 95
HphI	GGTGA	3 cut(s)	115, 176, 318
Hpy188I	TCNGA	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	3 cut(s)	82, 133, 272
HpyCH4V	TGCA	2 cut(s)	268, 294
HpyF3I	CTNAG	1 cut(s)	422
Hsp92II	CATG	3 cut(s)	268, 377, 447
Kzo9I	GATC	3 cut(s)	9, 18, 89
LpnPI	CCDG	9 cut(s)	15, 26, 34, 55, 67, 74, 108, 261, 420
MaeI	CTAG	1 cut(s)	140
MaeIII	GTNAC	4 cut(s)	22, 103, 178, 409
MalI	GATC	3 cut(s)	11, 20, 91
MboI	GATC	3 cut(s)	9, 18, 89
MfeI	CAATTG	1 cut(s)	289
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	2 cut(s)	241, 289
MmeI	TCCRAC	1 cut(s)	195
MseI	TTAA	1 cut(s)	218
MslI	CAYNNNNRTG	2 cut(s)	263, 407
MspI	CCGG	2 cut(s)	61, 95
MspR9I	CCNGG	1 cut(s)	14
MunI	CAATTG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	14
NcoI	CCATGG	1 cut(s)	373
NdeII	GATC	3 cut(s)	9, 18, 89
NlaIII	CATG	3 cut(s)	268, 377, 447
NmuCI	GTSAC	1 cut(s)	409
PshBI	ATTAAT	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	89
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	2 cut(s)	263, 407
SaqAI	TTAA	1 cut(s)	218
Sau3AI	GATC	3 cut(s)	9, 18, 89
Sau96I	GGNCC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	4 cut(s)	110, 145, 204, 300
SmiMI	CAYNNNNRTG	2 cut(s)	263, 407
Sse9I	AATT	2 cut(s)	241, 289
SsiI	CCGC	3 cut(s)	43, 73, 190
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	12
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	3 cut(s)	82, 133, 272
TasI	AATT	2 cut(s)	241, 289
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TseFI	GTSAC	1 cut(s)	409
Tsp45I	GTSAC	1 cut(s)	409
VspI	ATTAAT	1 cut(s)	218
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.