Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Forward (+)

44455881 .. 44456552

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00250680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAGTTTGTTGTTTGCTGCTAAGTTTGAGAAAATGGAAGGGAATGCCAGAATGATGTTTGATGACATTTGGGAGAAATGGAAATCAAAAGTTCATGCCAAAATTGCAAGTGAAGGGAATGCAACGGAGCTGGATTCTACTATTAGGGAATGGCTTGAACTTGACGGTGAGATGGTGATATGTTCTGCCGACACACAATCTGAAGCAAAGGGAATAAAGGAGGCTAAACTCTTTTGCAAGGAAGCATTCGACGGACTTGGTGAACTCGAAGCCTTAGTCTCTCGGGTATTCACTACCATCATTTCCAGTCCTCAATATTTTCGAGCAGCTTTTGATGGGGTATTGTGTGACTTATATAAGCTTTATGTTGTGATTTATAATGCTATCAATGATAATGCTGTGAATTTGCTTCTTGATGACAAATTTGGGATAATGGTAAGGAATGACAAGTTACTTTATGAATATATGAACATGCCTGCCAAAATGCTTTTAAGGAGAGTTAGTAGAGAGTGGGTGAGTTCAAATGTTAGTATAATGGATACAATTGTTGCTGCATTATGTGGAAAGAGCATTGACTCCATGGAGCTACATGTCAAGATGGATGGCATGAGAATTTCATTTTTAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

209

Amino Acids

23.76

Weight (kDa)

5.09

Isoelectric Point (pI)

30.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
AcsI	RAATTY	3 cut(s)	403, 422, 612
AcuI	CTGAAG	1 cut(s)	222
AflIII	ACRYGT	1 cut(s)	589
AgsI	TTSAA	2 cut(s)	158, 522
AluBI	AGCT	4 cut(s)	130, 329, 361, 586
AluI	AGCT	4 cut(s)	130, 329, 361, 586
Alw26I	GTCTC	1 cut(s)	283
Ama87I	CYCGRG	1 cut(s)	282
ApeKI	GCWGC	3 cut(s)	17, 326, 551
ApoI	RAATTY	3 cut(s)	403, 422, 612
ArsI	GACNNNNNNTTYG	2 cut(s)	261, 293
AsuHPI	GGTGA	4 cut(s)	179, 187, 272, 526
AvaI	CYCGRG	1 cut(s)	282
BaeI	ACNNNNGTAYC	2 cut(s)	531, 564
BbvI	GCAGC	3 cut(s)	4, 338, 538
BccI	CCATC	5 cut(s)	166, 305, 329, 592, 596
BciVI	GTATCC	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	283
BfuI	GTATCC	1 cut(s)	532
BisI	GCNGC	3 cut(s)	18, 327, 552
BlsI	GCNGC	3 cut(s)	19, 328, 553
BmeT110I	CYCGRG	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	579
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bse1I	ACTGG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	579
BseGI	GGATG	1 cut(s)	607
BseNI	ACTGG	1 cut(s)	306
BseXI	GCAGC	3 cut(s)	4, 338, 538
BsiHKCI	CYCGRG	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	283
BsmI	GAATGC	3 cut(s)	49, 124, 245
BsoBI	CYCGRG	1 cut(s)	282
Bsp19I	CCATGG	1 cut(s)	579
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	579
BssT1I	CCWWGG	1 cut(s)	579
Bst4CI	ACNGT	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	2 cut(s)	21, 274
BstDSI	CCRYGG	1 cut(s)	579
BstF5I	GGATG	1 cut(s)	607
BstMAI	GTCTC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNSI	RCATGY	2 cut(s)	475, 593
BstV1I	GCAGC	3 cut(s)	4, 338, 538
BsuI	GTATCC	1 cut(s)	532
BtgI	CCRYGG	1 cut(s)	579
BtsCI	GGATG	1 cut(s)	607
Cac8I	GCNNGC	1 cut(s)	477
CviAII	CATG	5 cut(s)	95, 472, 580, 590, 607
CviJI	RGCY	7 cut(s)	130, 154, 224, 272, 329, 361, 586
CviKI_1	RGCY	7 cut(s)	130, 154, 224, 272, 329, 361, 586
DdeI	CTNAG	2 cut(s)	21, 274
Eco130I	CCWWGG	1 cut(s)	579
Eco57I	CTGAAG	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	579
ErhI	CCWWGG	1 cut(s)	579
FaeI	CATG	5 cut(s)	98, 475, 583, 593, 610
FatI	CATG	5 cut(s)	94, 471, 579, 589, 606
Fnu4HI	GCNGC	3 cut(s)	18, 327, 552
FokI	GGATG	1 cut(s)	614
Fsp4HI	GCNGC	3 cut(s)	18, 327, 552
GluI	GCNGC	3 cut(s)	18, 327, 552
Hin1II	CATG	5 cut(s)	98, 475, 583, 593, 610
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	2 cut(s)	134, 575
HphI	GGTGA	4 cut(s)	179, 187, 272, 526
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	2 cut(s)	413, 595
Hpy8I	GTNNAC	1 cut(s)	263
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	32, 107
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	4 cut(s)	107, 122, 237, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	21, 274
Hsp92II	CATG	5 cut(s)	98, 475, 583, 593, 610
LmnI	GCTCC	2 cut(s)	127, 583
LpnPI	CCDG	4 cut(s)	61, 116, 319, 489
Lsp1109I	GCAGC	3 cut(s)	4, 338, 538
MaeIII	GTNAC	2 cut(s)	347, 450
MfeI	CAATTG	1 cut(s)	543
MluCI	AATT	6 cut(s)	102, 403, 422, 543, 612, 624
MlyI	GAGTC	1 cut(s)	569
MnlI	CCTC	2 cut(s)	214, 321
MseI	TTAA	2 cut(s)	491, 623
MunI	CAATTG	1 cut(s)	543
Mva1269I	GAATGC	3 cut(s)	49, 124, 245
MwoI	GCNNNNNNNGC	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	579
NlaIII	CATG	5 cut(s)	98, 475, 583, 593, 610
NmuCI	GTSAC	1 cut(s)	347
NspI	RCATGY	2 cut(s)	475, 593
PciI	ACATGT	1 cut(s)	589
PctI	GAATGC	3 cut(s)	49, 124, 245
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	3 cut(s)	19, 328, 553
PleI	GAGTC	1 cut(s)	569
PpsI	GAGTC	1 cut(s)	569
PscI	ACATGT	1 cut(s)	589
PsiI	TTATAA	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	491, 623
SatI	GCNGC	3 cut(s)	18, 327, 552
SchI	GAGTC	1 cut(s)	569
SetI	ASST	4 cut(s)	132, 331, 363, 588
Sse9I	AATT	6 cut(s)	102, 403, 422, 543, 612, 624
SspI	AATATT	1 cut(s)	317
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	1 cut(s)	167
TaqI	TCGA	3 cut(s)	249, 267, 322
TasI	AATT	6 cut(s)	102, 403, 422, 543, 612, 624
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	491, 623
Tru9I	TTAA	2 cut(s)	491, 623
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	3 cut(s)	17, 326, 551
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	4 cut(s)	83, 474, 482, 606
TspGWI	ACGGA	2 cut(s)	140, 267
XapI	RAATTY	3 cut(s)	403, 422, 612
XceI	RCATGY	2 cut(s)	475, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.