RLG00000019029

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003456
Physical Location & Seq
Forward (+)
45021375 .. 45023708
2334 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019029

Sequence Viewer

Length: 318 bp
ATGGTAATTGACTTGGATGATGAAGCAGGGAGACTAGCTAAGGTACCGACTGACATAGATCAAGCCTCTCAAGCTTGGTTATTTGCGTGGATGACCTTTTCACTTGCCCCCTTTTTGATTCTTGGTGCACTGCTGATATCTATCACACATGCAATAAGTACCATTGCTGCATCATTTGTTCAGCTCAGTATTGAGGTTGACAGAGGGACAAGATTCAAGAACACCGCCGATGAACTGACGAAGATGGAGGGGTCGTGTGAAGAATCTGAATTGATAGTTTATGATGGGGTAATAATGTTGGGAGATAGAGAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.55

Weight (kDa)

4.2

Isoelectric Point (pI)

32.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 43
AciI CCGC 1 cut(s) 225
AfaI GTAC 2 cut(s) 45, 160
AgsI TTSAA 1 cut(s) 217
AluBI AGCT 3 cut(s) 38, 74, 184
AluI AGCT 3 cut(s) 38, 74, 184
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 25
Alw44I GTGCAC 1 cut(s) 126
ApaLI GTGCAC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 167
Asp718I GGTACC 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 154
BccI CCATC 2 cut(s) 238, 278
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 1 cut(s) 35
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 45
BmsI GCATC 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 54
BsaBI GATNNNNATC 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bse3DI GCAATG 1 cut(s) 162
Bse8I GATNNNNATC 1 cut(s) 140
BseGI GGATG 2 cut(s) 22, 96
BseJI GATNNNNATC 1 cut(s) 140
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 199
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 1 cut(s) 154
BshNI GGYRCC 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 130
BslFI GGGAC 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 58
BspACI CCGC 1 cut(s) 225
BspCNI CTCAG 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 162
BssMI GATC 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 39, 185
BstF5I GGATG 2 cut(s) 22, 96
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 152
BstSLI GKGCMC 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 154
BtsCI GGATG 2 cut(s) 22, 96
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 128
Csp6I GTAC 2 cut(s) 44, 159
CviAII CATG 1 cut(s) 149
CviJI RGCY 4 cut(s) 38, 65, 74, 184
CviKI_1 RGCY 4 cut(s) 38, 65, 74, 184
CviQI GTAC 2 cut(s) 44, 159
DdeI CTNAG 2 cut(s) 39, 185
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eco32I GATATC 1 cut(s) 138
EcoRV GATATC 1 cut(s) 138
FaeI CATG 1 cut(s) 152
FaiI YATR 3 cut(s) 56, 150, 282
FaqI GGGAC 1 cut(s) 220
FatI CATG 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 2 cut(s) 29, 103
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 1 cut(s) 35
GluI GCNGC 1 cut(s) 168
Hin1II CATG 1 cut(s) 152
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 72
HinfI GANTC 3 cut(s) 118, 213, 263
Hpy166II GTNNAC 2 cut(s) 128, 199
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 2 cut(s) 128, 199
HpyCH4V TGCA 3 cut(s) 128, 152, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 2 cut(s) 39, 185
Hsp92II CATG 1 cut(s) 152
KpnI GGTACC 1 cut(s) 47
Kzo9I GATC 1 cut(s) 58
LpnPI CCDG 1 cut(s) 12
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 179
MaeI CTAG 1 cut(s) 35
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 2 cut(s) 253, 272
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 2 cut(s) 6, 269
MnlI CCTC 4 cut(s) 76, 187, 197, 241
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 1 cut(s) 58
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 1 cut(s) 45
NspI RCATGY 1 cut(s) 152
PfeI GAWTC 3 cut(s) 118, 213, 263
PkrI GCNGC 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 45
RsaI GTAC 2 cut(s) 45, 160
RsaNI GTAC 2 cut(s) 44, 159
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 1 cut(s) 58
SduI GDGCHC 1 cut(s) 130
SetI ASST 6 cut(s) 40, 45, 76, 98, 186, 198
SfaNI GCATC 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 2 cut(s) 6, 269
SsiI CCGC 1 cut(s) 225
SspMI CTAG 1 cut(s) 35
TasI AATT 2 cut(s) 6, 269
TfiI GAWTC 3 cut(s) 118, 213, 263
TscAI CASTG 1 cut(s) 135
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 2 cut(s) 36, 246
TspRI CASTG 1 cut(s) 135
VneI GTGCAC 1 cut(s) 126
XceI RCATGY 1 cut(s) 152
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.