Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Reverse (-)

5049547 .. 5060353

Gene Structure 10807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG071200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGTAGTGGCAATGGCAACAGTGCTAGTGCAGATGAAAAGCATACCGTATGATAATGAAATGGGTGAGGATAGTAGTGAGAAGGAAGAATTTGTGAGTGTAACTGATAAGGGTCACCAAAATTGGGGTAAAGTAACTGGTGAATACCTTCATTTCCCTGGGGGTGGAACTCAGTTTAAGAATGGTGCTCTTCACAATAATGATTTTATTCAAAAATCTCTTCCTGAACCCGTGATATTGGATGTTGGGTGTGGTAACCTGCCTTTAGAGCTTAATCGTGTCTTGCGATCTGGAGGTTACTTTGTGTGTGGTGTGCGCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005911 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009506 GO:0012505 GO:0016740 GO:0016741 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

107

Amino Acids

11.72

Weight (kDa)

5.23

Isoelectric Point (pI)

28.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	35 - 85	2.1e-11	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	267
AccII	CGCG	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	124, 164
AgsI	TTSAA	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
Alw21I	GWGCWC	1 cut(s)	190
ApoI	RAATTY	1 cut(s)	89
Asp700I	GAANNNNTTC	1 cut(s)	147
AspLEI	GCGC	2 cut(s)	318, 320
AsuHPI	GGTGA	3 cut(s)	77, 107, 152
Bbv12I	GWGCWC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	159
BfaI	CTAG	1 cut(s)	26
BfuAI	ACCTGC	1 cut(s)	267
Bme1390I	CCNGG	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	312
BsaJI	CCNNGG	2 cut(s)	157, 158
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 164
Bse1I	ACTGG	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	157, 158
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	2 cut(s)	124, 164
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	142
BsePI	GCGCGC	1 cut(s)	316
BsgI	GTGCAG	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	190
BslI	CCNNNNNNNGG	2 cut(s)	124, 164
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	287
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	318
BspMI	ACCTGC	1 cut(s)	267
BspQI	GCTCTTC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	2 cut(s)	157, 158
BssHII	GCGCGC	1 cut(s)	316
BssMI	GATC	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	22, 48
Bst6I	CTCTTC	2 cut(s)	195, 225
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	2 cut(s)	171, 321
BstEII	GGTNACC	2 cut(s)	113, 254
BstF5I	GGATG	1 cut(s)	247
BstFNI	CGCG	1 cut(s)	318
BstHHI	GCGC	2 cut(s)	318, 320
BstKTI	GATC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	287
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstNI	CCWGG	1 cut(s)	159
BstPI	GGTNACC	2 cut(s)	113, 254
BstSCI	CCNGG	1 cut(s)	157
BstUI	CGCG	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	318
CfoI	GCGC	2 cut(s)	318, 320
CviJI	RGCY	1 cut(s)	271
CviKI_1	RGCY	1 cut(s)	271
DdeI	CTNAG	2 cut(s)	171, 321
DpnI	GATC	1 cut(s)	289
DpnII	GATC	1 cut(s)	287
Eam1104I	CTCTTC	2 cut(s)	195, 225
EarI	CTCTTC	2 cut(s)	195, 225
Eco91I	GGTNACC	2 cut(s)	113, 254
EcoO65I	GGTNACC	2 cut(s)	113, 254
EcoRII	CCWGG	1 cut(s)	157
FaiI	YATR	2 cut(s)	44, 51
FokI	GGATG	1 cut(s)	254
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	2 cut(s)	317, 319
GsuI	CTGGAG	1 cut(s)	312
HhaI	GCGC	2 cut(s)	318, 320
Hin6I	GCGC	2 cut(s)	316, 318
HinP1I	GCGC	2 cut(s)	316, 318
HphI	GGTGA	3 cut(s)	77, 107, 152
Hpy188III	TCNNGA	2 cut(s)	224, 291
HpyAV	CCTTC	2 cut(s)	76, 158
HpyCH4III	ACNGT	2 cut(s)	22, 48
HpyCH4V	TGCA	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpyF3I	CTNAG	2 cut(s)	171, 321
HspAI	GCGC	2 cut(s)	316, 318
Kzo9I	GATC	1 cut(s)	287
LguI	GCTCTTC	1 cut(s)	195
LpnPI	CCDG	6 cut(s)	123, 144, 171, 237, 272, 276
MaeI	CTAG	1 cut(s)	26
MaeIII	GTNAC	5 cut(s)	100, 113, 133, 254, 296
MalI	GATC	1 cut(s)	289
MboI	GATC	1 cut(s)	287
MboII	GAAGA	3 cut(s)	98, 182, 212
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	2 cut(s)	89, 121
MnlI	CCTC	2 cut(s)	61, 287
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	2 cut(s)	177, 273
MslI	CAYNNNNRTG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	268
NdeII	GATC	1 cut(s)	287
NmuCI	GTSAC	1 cut(s)	113
PasI	CCCWGGG	1 cut(s)	158
PauI	GCGCGC	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	157
PspEI	GGTNACC	2 cut(s)	113, 254
PspGI	CCWGG	1 cut(s)	157
PteI	GCGCGC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	198
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	177, 273
Sau3AI	GATC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	4 cut(s)	150, 261, 273, 298
SmiMI	CAYNNNNRTG	1 cut(s)	198
Sse9I	AATT	2 cut(s)	89, 121
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	22, 48
TasI	AATT	2 cut(s)	89, 121
Tru1I	TTAA	2 cut(s)	177, 273
Tru9I	TTAA	2 cut(s)	177, 273
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	3 cut(s)	50, 72, 140
TspRI	CASTG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	89
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.