Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Reverse (-)

18900374 .. 18901051

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00179280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTATAGAGACCCATTGAAGACACAACTCATTGATGATGTAGCCAACAAACTGATTACACAACCTGCATTCAACGAGAAATTGGATATTTTCCAGTCAAGTTATTTAAGTGGAGGTATTGTAGTCTCCTACGATATGCATGATTTGGGTGATAGTGCTTTCAATGATAATGCTGGGAATTTGCTTCCCGATGACACATTTGGGATAATGGTAAGGAATGCCGACTTGTTTCATGAATATATGAATGTGCTTGCTAAAATGCTTTTCAAGAGTGTTAGTAACGAGCGGGTGAGTTTAAATGTTAGTCTAATGGATACAATTGTTGCTACATTATGTGGAAAGGGCATTGACTCCATTGAGTTACATGTCAAGATGGATGGTGTTGGAATTTCATCTTTATTTTGGTTGCTTGCATTTCCTAATACGAAGTTTAAAAGAGAATCTGCAAGTATAATCCAAAGCTTGGCATATCATATTGACGATCAGATGGTGGGCTGGAATGTTATACATGCCTTGATGTATGAAGAGCGATTTGTTATTGAGTTTTTTGAGAAACCAAAAGACAGGAAACTTGAAGCTTTAATAGATGCTACTACCAATTCGAGAATTGATGATCCGAACGGCAAGAGACACCTTACCTTGCCACCGTGGATATTTATGTTATGTACAGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

25.5

Weight (kDa)

5.2

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	463
AccBSI	CCGCTC	1 cut(s)	286
AciI	CCGC	1 cut(s)	286
AclWI	GGATC	1 cut(s)	608
AcsI	RAATTY	2 cut(s)	178, 387
AfaI	GTAC	1 cut(s)	667
AfiI	CCNNNNNNNGG	1 cut(s)	463
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	5 cut(s)	19, 73, 163, 268, 575
AluBI	AGCT	2 cut(s)	462, 578
AluI	AGCT	2 cut(s)	462, 578
Alw26I	GTCTC	3 cut(s)	3, 130, 622
AlwI	GGATC	1 cut(s)	608
ApoI	RAATTY	2 cut(s)	178, 387
AsuHPI	GGTGA	2 cut(s)	161, 301
BaeI	ACNNNNGTAYC	2 cut(s)	306, 339
BbsI	GAAGAC	1 cut(s)	26
BccI	CCATC	3 cut(s)	367, 371, 481
BceAI	ACGGC	1 cut(s)	637
BciVI	GTATCC	1 cut(s)	307
BcoDI	GTCTC	3 cut(s)	3, 130, 622
BfuAI	ACCTGC	1 cut(s)	73
BfuI	GTATCC	1 cut(s)	307
BmsI	GCATC	1 cut(s)	577
BpiI	GAAGAC	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	3
BsaJI	CCNNGG	1 cut(s)	647
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	463
Bse1I	ACTGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	647
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	1 cut(s)	463
BseNI	ACTGG	1 cut(s)	94
BseYI	CCCAGC	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	463
BsmAI	GTCTC	3 cut(s)	3, 130, 622
BsmI	GAATGC	2 cut(s)	68, 223
Bso31I	GGTCTC	1 cut(s)	3
Bsp1407I	TGTACA	1 cut(s)	665
Bsp143I	GATC	2 cut(s)	481, 613
BspACI	CCGC	1 cut(s)	286
BspHI	TCATGA	1 cut(s)	232
BspMI	ACCTGC	1 cut(s)	73
BspPI	GGATC	1 cut(s)	608
BspQI	GCTCTTC	1 cut(s)	519
BspTNI	GGTCTC	1 cut(s)	3
BsrBI	CCGCTC	1 cut(s)	286
BsrGI	TGTACA	1 cut(s)	665
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	647
BssMI	GATC	2 cut(s)	481, 613
Bst4CI	ACNGT	1 cut(s)	648
Bst6I	CTCTTC	1 cut(s)	519
BstAUI	TGTACA	1 cut(s)	665
BstC8I	GCNNGC	2 cut(s)	252, 411
BstDSI	CCRYGG	1 cut(s)	647
BstF5I	GGATG	1 cut(s)	382
BstKTI	GATC	2 cut(s)	484, 616
BstMAI	GTCTC	3 cut(s)	3, 130, 622
BstMBI	GATC	2 cut(s)	481, 613
BstNSI	RCATGY	2 cut(s)	368, 512
BstV2I	GAAGAC	1 cut(s)	26
BsuI	GTATCC	1 cut(s)	307
BtgI	CCRYGG	1 cut(s)	647
BtsCI	GGATG	1 cut(s)	382
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	2 cut(s)	252, 411
CciI	TCATGA	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	666
CviAII	CATG	4 cut(s)	140, 233, 365, 509
CviJI	RGCY	4 cut(s)	44, 462, 495, 578
CviKI_1	RGCY	4 cut(s)	44, 462, 495, 578
CviQI	GTAC	1 cut(s)	666
DpnI	GATC	2 cut(s)	483, 615
DpnII	GATC	2 cut(s)	481, 613
DraI	TTTAAA	2 cut(s)	297, 433
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Eco31I	GGTCTC	1 cut(s)	3
EcoT22I	ATGCAT	1 cut(s)	141
FaeI	CATG	4 cut(s)	143, 236, 368, 512
FatI	CATG	4 cut(s)	139, 232, 364, 508
FauI	CCCGC	1 cut(s)	279
FokI	GGATG	1 cut(s)	389
GsaI	CCCAGC	1 cut(s)	177
Hin1II	CATG	4 cut(s)	143, 236, 368, 512
HindIII	AAGCTT	2 cut(s)	460, 576
HinfI	GANTC	2 cut(s)	350, 440
HphI	GGTGA	2 cut(s)	161, 301
Hpy188I	TCNGA	2 cut(s)	486, 618
Hpy188III	TCNNGA	5 cut(s)	188, 233, 268, 370, 603
HpyCH4III	ACNGT	1 cut(s)	648
HpyCH4V	TGCA	4 cut(s)	68, 139, 413, 446
Hsp92II	CATG	4 cut(s)	143, 236, 368, 512
Kzo9I	GATC	2 cut(s)	481, 613
LguI	GCTCTTC	1 cut(s)	519
LpnPI	CCDG	6 cut(s)	78, 107, 159, 481, 550, 654
LweI	GCATC	1 cut(s)	577
MaeIII	GTNAC	2 cut(s)	278, 360
MalI	GATC	2 cut(s)	483, 615
MbiI	CCGCTC	1 cut(s)	286
MboI	GATC	2 cut(s)	481, 613
MboII	GAAGA	2 cut(s)	31, 536
MfeI	CAATTG	1 cut(s)	318
MluCI	AATT	6 cut(s)	80, 178, 318, 387, 598, 606
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	1 cut(s)	107
Mph1103I	ATGCAT	1 cut(s)	141
MseI	TTAA	4 cut(s)	107, 296, 432, 581
MunI	CAATTG	1 cut(s)	318
Mva1269I	GAATGC	2 cut(s)	68, 223
NdeII	GATC	2 cut(s)	481, 613
NlaIII	CATG	4 cut(s)	143, 236, 368, 512
NsiI	ATGCAT	1 cut(s)	141
NspI	RCATGY	2 cut(s)	368, 512
PagI	TCATGA	1 cut(s)	232
PciI	ACATGT	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	519
PctI	GAATGC	2 cut(s)	68, 223
PfeI	GAWTC	1 cut(s)	440
PflMI	CCANNNNNTGG	1 cut(s)	463
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
PscI	ACATGT	1 cut(s)	364
PspFI	CCCAGC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	667
RsaNI	GTAC	1 cut(s)	666
SapI	GCTCTTC	1 cut(s)	519
SaqAI	TTAA	4 cut(s)	107, 296, 432, 581
Sau3AI	GATC	2 cut(s)	481, 613
SchI	GAGTC	1 cut(s)	344
SetI	ASST	6 cut(s)	67, 118, 464, 580, 636, 641
SfaNI	GCATC	1 cut(s)	577
Sse9I	AATT	6 cut(s)	80, 178, 318, 387, 598, 606
SsiI	CCGC	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	648
TaqI	TCGA	1 cut(s)	602
TasI	AATT	6 cut(s)	80, 178, 318, 387, 598, 606
TatI	WGTACW	1 cut(s)	665
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	4 cut(s)	107, 296, 432, 581
Tru9I	TTAA	4 cut(s)	107, 296, 432, 581
TspDTI	ATGAA	5 cut(s)	221, 249, 257, 381, 537
Van91I	CCANNNNNTGG	1 cut(s)	463
XapI	RAATTY	2 cut(s)	178, 387
XceI	RCATGY	2 cut(s)	368, 512
Zsp2I	ATGCAT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.