Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003456

Physical Location & Seq

Genomic Coordinates Reverse (-)

11269258 .. 11269994

Gene Structure 737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCGAGATACTAGCGAGTTGAGGCAATTTCGATTAGAGCAATCGAGGCCGCCACCACCACCACGACCACCGGCCATTGCGGATCCCTACGCCTACCGGCCGCAACAACCACCACCTTCGCCGCTTCGTGGAGTCCGCCGCCTCACTCTTACCATCTACCTACACTGTCGGGCCAATATCCACCATATCCGCCTCTTGTTCCGACGGGCCATTTTAGACTCCTACCATATGCCAACATGGACCGCCTCCTCCTCGCTCGACGACGCCGTTTCGGCTCAGCCGAACAATTCCCCTTCATCCTTTTGCTCGGTAAGTGGTACCAACACAAGTGTTTCTAATCGGTTCAATTGTCACAAGGATGATTGTGGTGGTATGGGTTTTGTGTTTGGTGCTACCGGTATTGATGAGAAATTAGAGAATGGGAAGAGTGTCGAGAAGAGGGTTGAGGTGACTAGTGGAGATGGTAGAAAGTTCGGTGAGCTTGAGTGTGTCATTGCTAAGCGGGACGAGGGTGGTCTAGTTGAAGTTAAGGAGCAGCTTAGCAATGGGATGTCGAATTTCATGCCATCCAACTGTTTGATAAAATGCCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

21.98

Weight (kDa)

8.72

Isoelectric Point (pI)

64.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23542
rosa_chinensis	RchiOBHm_Chr1g0323881 RchiOBHm_Chr1g0363301 RchiOBHm_Chr3g0488451 RchiOBHm_Chr4g0387101 RchiOBHm_Chr4g0387111 RchiOBHm_Chr4g0402531
rosa_laevigata	RLG00000000633 RLG00000003072 RLG00000011416 RLG00000019029 RLG00000026076 RLG00000036164
rosa_multiflora	Rmu_co8181938.1_g000002 Rmu_co8182286.1_g000002 Rmu_sc0000103.1_g000012 Rmu_sc0001207.1_g000051 Rmu_sc0003615.1_g000003 Rmu_sc0004695.1_g000012 Rmu_sc0006098.1_g000005 Rmu_sc0007104.1_g000004 Rmu_sc0022560.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249830 Rroxscaffold_3G00250680 Rroxscaffold_4G00290730 Rroxscaffold_4G00291010 Rroxscaffold_5G00369410 Rroxscaffold_7G00179280
rosa_rugosa	Rorug07G0054300
rosa_samantha	Rh1BG312100 Rh1CG327200 Rh1DG343700 Rh3BG375900 Rh5BG126700 Rh7AG071200 Rh7DG076500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	317
AciI	CCGC	9 cut(s)	50, 80, 101, 122, 136, 139, 190, 243, 502
AclWI	GGATC	2 cut(s)	77, 90
AcoI	YGGCCR	2 cut(s)	72, 98
AcsI	RAATTY	1 cut(s)	556
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgeI	ACCGGT	1 cut(s)	395
AgsI	TTSAA	2 cut(s)	346, 524
AhlI	ACTAGT	1 cut(s)	452
AluBI	AGCT	2 cut(s)	481, 538
AluI	AGCT	2 cut(s)	481, 538
AlwI	GGATC	2 cut(s)	77, 90
AoxI	GGCC	5 cut(s)	47, 72, 98, 171, 207
ApeKI	GCWGC	1 cut(s)	535
ApoI	RAATTY	1 cut(s)	556
AsiGI	ACCGGT	1 cut(s)	395
Asp718I	GGTACC	1 cut(s)	317
AspS9I	GGNCC	3 cut(s)	171, 207, 240
AsuHPI	GGTGA	2 cut(s)	460, 488
AvaII	GGWCC	1 cut(s)	240
BamHI	GGATCC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	3 cut(s)	161, 455, 574
BceAI	ACGGC	1 cut(s)	251
BcgI	CGANNNNNNTGC	2 cut(s)	544, 578
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	3 cut(s)	12, 453, 518
BglI	GCCNNNNNGGC	1 cut(s)	272
BisI	GCNGC	5 cut(s)	50, 101, 122, 139, 536
BlpI	GCTNAGC	3 cut(s)	276, 498, 539
BlsI	GCNGC	5 cut(s)	51, 102, 123, 140, 537
Bme18I	GGWCC	1 cut(s)	240
BmgT120I	GGNCC	3 cut(s)	171, 207, 240
BmiI	GGNNCC	2 cut(s)	84, 319
Bpu1102I	GCTNAGC	3 cut(s)	276, 498, 539
BpuEI	CTTGAG	1 cut(s)	503
BsaHI	GRCGYC	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse118I	RCCGGY	3 cut(s)	70, 96, 395
Bse3DI	GCAATG	3 cut(s)	75, 492, 550
BseGI	GGATG	4 cut(s)	296, 364, 555, 566
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMI	GCAATG	3 cut(s)	75, 492, 550
BseMII	CTCAG	1 cut(s)	290
BseRI	GAGGAG	2 cut(s)	238, 241
BseX3I	CGGCCG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	547
Bsh1285I	CGRYCG	1 cut(s)	101
BshFI	GGCC	5 cut(s)	49, 74, 100, 173, 209
BshNI	GGYRCC	1 cut(s)	317
BshTI	ACCGGT	1 cut(s)	395
BsiEI	CGRYCG	1 cut(s)	101
BsiSI	CCGG	3 cut(s)	71, 97, 396
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	518
BsnI	GGCC	5 cut(s)	49, 74, 100, 173, 209
Bsp143I	GATC	1 cut(s)	82
Bsp1720I	GCTNAGC	3 cut(s)	276, 498, 539
BspACI	CCGC	9 cut(s)	50, 80, 101, 122, 136, 139, 190, 243, 502
BspANI	GGCC	5 cut(s)	49, 74, 100, 173, 209
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	84, 319
BspPI	GGATC	2 cut(s)	77, 90
BspT107I	GGYRCC	1 cut(s)	317
BsrDI	GCAATG	3 cut(s)	75, 492, 550
BsrFI	RCCGGY	3 cut(s)	70, 96, 395
BssAI	RCCGGY	3 cut(s)	70, 96, 395
BssMI	GATC	1 cut(s)	82
BssNI	GRCGYC	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	167, 575
Bst6I	CTCTTC	2 cut(s)	419, 431
BstACI	GRCGYC	1 cut(s)	264
BstDEI	CTNAG	3 cut(s)	276, 498, 539
BstF5I	GGATG	4 cut(s)	296, 364, 555, 566
BstKTI	GATC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	82
BstMCI	CGRYCG	1 cut(s)	101
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 272
BstV1I	GCAGC	1 cut(s)	547
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BstZI	CGGCCG	1 cut(s)	98
BsuRI	GGCC	5 cut(s)	49, 74, 100, 173, 209
BtsCI	GGATG	4 cut(s)	296, 364, 555, 566
BtsIMutI	CAGTG	1 cut(s)	163
Cfr10I	RCCGGY	3 cut(s)	70, 96, 395
Cfr13I	GGNCC	3 cut(s)	171, 207, 240
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	318
CspAI	ACCGGT	1 cut(s)	395
CviAII	CATG	2 cut(s)	237, 562
CviJI	RGCY	9 cut(s)	49, 74, 100, 173, 209, 275, 280, 481, 538
CviKI_1	RGCY	9 cut(s)	49, 74, 100, 173, 209, 275, 280, 481, 538
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	3 cut(s)	276, 498, 539
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
EaeI	YGGCCR	2 cut(s)	72, 98
EagI	CGGCCG	1 cut(s)	98
Eam1104I	CTCTTC	2 cut(s)	419, 431
EarI	CTCTTC	2 cut(s)	419, 431
EciI	GGCGGA	2 cut(s)	125, 179
EclXI	CGGCCG	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	240
Eco52I	CGGCCG	1 cut(s)	98
FaeI	CATG	2 cut(s)	240, 565
FaiI	YATR	6 cut(s)	186, 228, 230, 238, 374, 563
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	2 cut(s)	236, 561
FauI	CCCGC	1 cut(s)	495
FauNDI	CATATG	1 cut(s)	228
Fnu4HI	GCNGC	5 cut(s)	50, 101, 122, 139, 536
FokI	GGATG	4 cut(s)	283, 371, 553, 562
Fsp4HI	GCNGC	5 cut(s)	50, 101, 122, 139, 536
FspBI	CTAG	3 cut(s)	12, 453, 518
GluI	GCNGC	5 cut(s)	50, 101, 122, 139, 536
HaeIII	GGCC	5 cut(s)	49, 74, 100, 173, 209
HapII	CCGG	3 cut(s)	71, 97, 396
HgaI	GACGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	2 cut(s)	240, 565
HinfI	GANTC	2 cut(s)	132, 218
HpaII	CCGG	3 cut(s)	71, 97, 396
HphI	GGTGA	2 cut(s)	460, 488
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	1 cut(s)	433
Hpy99I	CGWCG	3 cut(s)	207, 263, 266
HpyAV	CCTTC	2 cut(s)	126, 303
HpyCH4III	ACNGT	2 cut(s)	167, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 272
HpyF3I	CTNAG	3 cut(s)	276, 498, 539
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	240, 565
KpnI	GGTACC	1 cut(s)	321
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	1 cut(s)	532
LpnPI	CCDG	3 cut(s)	84, 110, 409
Lsp1109I	GCAGC	1 cut(s)	547
MaeI	CTAG	3 cut(s)	12, 453, 518
MaeIII	GTNAC	2 cut(s)	350, 448
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	2 cut(s)	436, 448
MfeI	CAATTG	1 cut(s)	346
MflI	RGATCY	1 cut(s)	82
MluCI	AATT	5 cut(s)	26, 286, 346, 410, 556
MlyI	GAGTC	2 cut(s)	141, 212
MmeI	TCCRAC	2 cut(s)	226, 594
MseI	TTAA	1 cut(s)	528
MslI	CAYNNNNRTG	1 cut(s)	357
MspI	CCGG	3 cut(s)	71, 97, 396
MunI	CAATTG	1 cut(s)	346
MwoI	GCNNNNNNNGC	2 cut(s)	46, 272
NdeI	CATATG	1 cut(s)	228
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	2 cut(s)	240, 565
NlaIV	GGNNCC	2 cut(s)	84, 319
NmuCI	GTSAC	2 cut(s)	350, 448
PcsI	WCGNNNNNNNCGW	2 cut(s)	264, 278
PinAI	ACCGGT	1 cut(s)	395
PkrI	GCNGC	5 cut(s)	51, 102, 123, 140, 537
PleI	GAGTC	2 cut(s)	140, 212
PpsI	GAGTC	2 cut(s)	140, 212
PspN4I	GGNNCC	2 cut(s)	84, 319
PspPI	GGNCC	3 cut(s)	171, 207, 240
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	5 cut(s)	50, 101, 122, 139, 536
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	3 cut(s)	171, 207, 240
SchI	GAGTC	2 cut(s)	141, 212
SetI	ASST	5 cut(s)	118, 162, 450, 483, 540
SinI	GGWCC	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
SpeI	ACTAGT	1 cut(s)	452
Sse9I	AATT	5 cut(s)	26, 286, 346, 410, 556
SsiI	CCGC	9 cut(s)	50, 80, 101, 122, 136, 139, 190, 243, 502
SspMI	CTAG	3 cut(s)	12, 453, 518
TaaI	ACNGT	2 cut(s)	167, 575
TaqI	TCGA	5 cut(s)	31, 44, 258, 432, 554
TasI	AATT	5 cut(s)	26, 286, 346, 410, 556
TauI	GCSGC	4 cut(s)	52, 103, 124, 141
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TscAI	CASTG	1 cut(s)	170
TseFI	GTSAC	2 cut(s)	350, 448
TseI	GCWGC	1 cut(s)	535
Tsp45I	GTSAC	2 cut(s)	350, 448
TspDTI	ATGAA	2 cut(s)	285, 550
TspRI	CASTG	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	240
XapI	RAATTY	1 cut(s)	556
XspI	CTAG	3 cut(s)	12, 453, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.