Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001040

Physical Location & Seq

Genomic Coordinates Forward (+)

11720806 .. 11721861

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13411.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCTTGGCGGAGAAAAGGTTCTTGAGAATGTAAAACCTGGAACACATTGGTGGCTGGCAGATTTTAATCTCTCTAATGCCCTATGTTGTGATGTTTTTGTGCTGGATTTGGTTGAAGAAGAATTCTTTGCTGCTCATCAGTTTCCAAAACCAAAAGGACCAAAGATCAATGCCAGAGCTTTGGCCAAAATTGGTGACAAGGTCTACGTAATGAGTTTTAAGCCATATTACTATTGTGGTGGTATGATTCCACATCCGGCCTTCGAGTGCTTTGATTCTGCACAACAGTCGTGGGAGGAGCTGCCTCCGCCGCTTGAATATTCTCTTCCCCAACCAGGAAACGGGGGCCTCCTAGCTGTTTGCTATTCTGCTCACGACTTAGTGGATTACTTATTTGCCTCTAATGGCGATTTACTGTGTCAAGAGCTACTTGACCGTTTGAACTGTCATCTTCCCTCCCCCAATAAACATCTCTTTGGTGGGAGAGTCTGCTATGGAAGCAAGTTCTGTCTCATTCTGTCCAGATATATTAATGATGATTCTTCATGGTCTTTAGCTGTAGCAACTTTTGATGATGGTTATTATGACCTATCTGACATGAACTTCCAGCTTCCAAGGCTTTATGAGTACTTGCATTTCCATGATGCTTTCTTCATATCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

25.05

Weight (kDa)

4.93

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25891 FvH4_2g13411
rosa_chinensis	RchiOBHm_Chr2g0136121 RchiOBHm_Chr2g0138881
rosa_laevigata	RLG00000004497 RLG00000004523 RLG00000015462 RLG00000019566 RLG00000019706 RLG00000019762
rosa_multiflora	Rmu_sc0002070.1_g000013 Rmu_sc0010558.1_g000006 Rmu_sc0010783.1_g000001 Rmu_sc0010783.1_g000002 Rmu_sc0039275.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105940 Rroxscaffold_3G00264300 Rroxscaffold_7G00216760
rosa_rugosa	Rorug02G0352600 Rorug03G0322000 Rorug05G0502700 Rorug06G0507000
rosa_samantha	Rh2AG147800 Rh2AG395200 Rh2AG402800 Rh2BG153100 Rh2BG404000 Rh2BG405000 Rh2BG411800 Rh2BG411900 Rh2BG412000 Rh2BG412100 Rh2BG412200 Rh2BG412300 Rh2BG412400 Rh2BG412500 Rh2BG412600 Rh2BG412700 Rh2BG412800 Rh2BG412900 Rh2BG413000 Rh2BG413100 Rh2BG413200 Rh2BG413300 Rh2CG372000 Rh2CG381800 Rh2CG388900 Rh2DG153400 Rh2DG417000 Rh2DG423000 Rh4BG147300 Rh4DG020200 Rh4DG020600 Rh6AG011000 Rh6CG008900 Rh6DG009900 Rh7AG113700 Rh7BG116200 Rh7BG116300 Rh7CG118800
rosa_wichuraiana	Rw2G032770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	3 cut(s)	9, 308, 311
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	122
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	2 cut(s)	335, 341
AgsI	TTSAA	3 cut(s)	116, 317, 442
AjnI	CCWGG	2 cut(s)	37, 334
AleI	CACNNNNGTG	1 cut(s)	49
AloI	GAACNNNNNNTCC	1 cut(s)	35
AluBI	AGCT	6 cut(s)	179, 301, 356, 427, 557, 610
AluI	AGCT	6 cut(s)	179, 301, 356, 427, 557, 610
Alw26I	GTCTC	1 cut(s)	515
AoxI	GGCC	3 cut(s)	183, 258, 346
ApeKI	GCWGC	2 cut(s)	131, 301
ApoI	RAATTY	1 cut(s)	122
AseI	ATTAAT	1 cut(s)	531
Asp700I	GAANNNNTTC	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	158, 346
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	118, 288
BccI	CCATC	1 cut(s)	569
BcgI	CGANNNNNNTGC	2 cut(s)	270, 304
BciT130I	CCWGG	2 cut(s)	39, 336
BcoDI	GTCTC	1 cut(s)	515
BfaI	CTAG	2 cut(s)	353, 664
BfmI	CTRYAG	1 cut(s)	558
BisI	GCNGC	3 cut(s)	132, 302, 311
BlsI	GCNGC	3 cut(s)	133, 303, 312
BmcAI	AGTACT	1 cut(s)	629
Bme1390I	CCNGG	2 cut(s)	39, 336
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	2 cut(s)	158, 346
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	2 cut(s)	39, 336
BmsI	GCATC	1 cut(s)	634
BpuEI	CTTGAG	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	614
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	335, 341
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	39, 336
BseDI	CCNNGG	1 cut(s)	614
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	2 cut(s)	335, 341
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	2 cut(s)	118, 288
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	3 cut(s)	185, 260, 348
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	2 cut(s)	335, 341
BsmAI	GTCTC	1 cut(s)	515
BsnI	GGCC	3 cut(s)	185, 260, 348
Bsp143I	GATC	1 cut(s)	165
BspACI	CCGC	3 cut(s)	9, 308, 311
BspANI	GGCC	3 cut(s)	185, 260, 348
BspLI	GGNNCC	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	614
BssMI	GATC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	614
Bst2UI	CCWGG	2 cut(s)	39, 336
Bst4CI	ACNGT	4 cut(s)	288, 417, 437, 446
Bst6I	CTCTTC	1 cut(s)	330
BstBAI	YACGTR	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	379
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	515
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	4 cut(s)	307, 310, 498, 616
BstNI	CCWGG	2 cut(s)	39, 336
BstSCI	CCNGG	2 cut(s)	37, 334
BstSFI	CTRYAG	1 cut(s)	558
BstSNI	TACGTA	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	118, 288
BstXI	CCANNNNNNTGG	1 cut(s)	181
BsuRI	GGCC	3 cut(s)	185, 260, 348
BtsCI	GGATG	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	57
Cfr13I	GGNCC	2 cut(s)	158, 346
Csp6I	GTAC	1 cut(s)	628
CspCI	CAANNNNNGTGG	2 cut(s)	272, 307
CviAII	CATG	3 cut(s)	546, 598, 641
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	1 cut(s)	379
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
EciI	GGCGGA	2 cut(s)	24, 297
Eco105I	TACGTA	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	614
Eco47I	GGWCC	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	2 cut(s)	37, 334
EcoT14I	CCWWGG	1 cut(s)	614
ErhI	CCWWGG	1 cut(s)	614
FaeI	CATG	3 cut(s)	549, 601, 644
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FatI	CATG	3 cut(s)	545, 597, 640
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	132, 302, 311
FokI	GGATG	1 cut(s)	240
Fsp4HI	GCNGC	3 cut(s)	132, 302, 311
FspBI	CTAG	2 cut(s)	353, 664
GluI	GCNGC	3 cut(s)	132, 302, 311
HaeIII	GGCC	3 cut(s)	185, 260, 348
HapII	CCGG	1 cut(s)	257
Hin1II	CATG	3 cut(s)	549, 601, 644
HinfI	GANTC	4 cut(s)	247, 275, 486, 539
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	595
Hpy188III	TCNNGA	4 cut(s)	23, 374, 422, 522
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	4 cut(s)	288, 417, 437, 446
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	2 cut(s)	281, 634
HpyF10VI	GCNNNNNNNGC	4 cut(s)	307, 310, 498, 616
HpyF3I	CTNAG	1 cut(s)	379
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	3 cut(s)	549, 601, 644
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	2 cut(s)	118, 288
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	2 cut(s)	353, 664
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	7 cut(s)	128, 131, 317, 443, 534, 643, 651
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	2 cut(s)	122, 189
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	495
MnlI	CCTC	5 cut(s)	289, 315, 359, 409, 466
Mox20I	TGGCCA	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	3 cut(s)	66, 219, 531
MslI	CAYNNNNRTG	2 cut(s)	49, 639
Msp20I	TGGCCA	1 cut(s)	185
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	39, 336
MvaI	CCWGG	2 cut(s)	39, 336
MwoI	GCNNNNNNNGC	4 cut(s)	307, 310, 498, 616
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	3 cut(s)	549, 601, 644
NlaIV	GGNNCC	1 cut(s)	347
NmuCI	GTSAC	1 cut(s)	194
OliI	CACNNNNGTG	1 cut(s)	49
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	3 cut(s)	247, 275, 539
PflFI	GACNNNGTC	1 cut(s)	200
PkrI	GCNGC	3 cut(s)	133, 303, 312
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
Ppu21I	YACGTR	1 cut(s)	208
PshBI	ATTAAT	1 cut(s)	531
Psp6I	CCWGG	2 cut(s)	37, 334
PspGI	CCWGG	2 cut(s)	37, 334
PspN4I	GGNNCC	1 cut(s)	347
PspPI	GGNCC	2 cut(s)	158, 346
PsyI	GACNNNGTC	1 cut(s)	200
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
RseI	CAYNNNNRTG	2 cut(s)	49, 639
SaqAI	TTAA	3 cut(s)	66, 219, 531
SatI	GCNGC	3 cut(s)	132, 302, 311
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	2 cut(s)	158, 346
ScaI	AGTACT	1 cut(s)	629
SchI	GAGTC	1 cut(s)	495
ScrFI	CCNGG	2 cut(s)	39, 336
SfaNI	GCATC	1 cut(s)	634
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	2 cut(s)	49, 639
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SnaBI	TACGTA	1 cut(s)	208
Sse9I	AATT	2 cut(s)	122, 189
SsiI	CCGC	3 cut(s)	9, 308, 311
SspI	AATATT	1 cut(s)	320
SspMI	CTAG	2 cut(s)	353, 664
StyD4I	CCNGG	2 cut(s)	37, 334
StyI	CCWWGG	1 cut(s)	614
TaaI	ACNGT	4 cut(s)	288, 417, 437, 446
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	264
TasI	AATT	2 cut(s)	122, 189
TatI	WGTACW	1 cut(s)	627
TauI	GCSGC	1 cut(s)	313
TfiI	GAWTC	3 cut(s)	247, 275, 539
Tru1I	TTAA	3 cut(s)	66, 219, 531
Tru9I	TTAA	3 cut(s)	66, 219, 531
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	2 cut(s)	131, 301
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	3 cut(s)	534, 614, 643
Tth111I	GACNNNGTC	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	158
VspI	ATTAAT	1 cut(s)	531
XapI	RAATTY	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	2 cut(s)	353, 664
ZrmI	AGTACT	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.