Rh7CG118800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001040
Physical Location & Seq
Reverse (-)
9095516 .. 9095938
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG118800.1

Sequence Viewer

Length: 423 bp
ATGGAGAAGAAGAACATGGAAGTCTATCTGTACATTCAATTTAAGGACCATCTTAACCGGGTGAATTTGGACAAGCTCGAGGAAGAGGAAGATCCTAAGTTGAAACTAGTGGCAGATTATCAGAAGGAGGGTCTTCCTCTTAGAGCGTGTCCGTTCTTGGAGATTTTAGGTAAACAATACATGGTCGGGGTAGAAAAGACTCGTAAGATGCCCAATGTTGACTATGATTGGATGATTGGCCTCGATTGGGAAGTATTCAAGCCCTCCGATGCCTTTATTTCTCATGTTTTTGTTTTGGATACCTCTAACGGAAATATCACTGTTGATCTTAGTTTTCCTAAAACAAATGCAGTAAAGACCAATGCCAAAGTCTTGCCTACCATTGACCAAAAGGTATACATAATTGATGTTGAGCCTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

16.32

Weight (kDa)

5.07

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 396
AclWI GGATC 1 cut(s) 86
AcsI RAATTY 1 cut(s) 64
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 247
AgsI TTSAA 3 cut(s) 38, 103, 259
AhlI ACTAGT 1 cut(s) 106
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
AlwI GGATC 1 cut(s) 86
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 1 cut(s) 238
ApoI RAATTY 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 125
BccI CCATC 1 cut(s) 57
BciVI GTATCC 1 cut(s) 292
BcnI CCSGG 1 cut(s) 59
BcuI ACTAGT 1 cut(s) 106
BfaI CTAG 1 cut(s) 107
BfuI GTATCC 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 2 cut(s) 198, 259
BpiI GAAGAC 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 59
Bsc4I CCNNNNNNNGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 247
BshFI GGCC 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 247
BsnI GGCC 1 cut(s) 240
BsoBI CYCGRG 1 cut(s) 77
Bsp1407I TGTACA 1 cut(s) 30
Bsp143I GATC 2 cut(s) 91, 325
BspANI GGCC 1 cut(s) 240
BspPI GGATC 1 cut(s) 86
BsrGI TGTACA 1 cut(s) 30
BssMI GATC 2 cut(s) 91, 325
BssNAI GTATAC 1 cut(s) 397
Bst1107I GTATAC 1 cut(s) 397
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 1 cut(s) 78
BstAUI TGTACA 1 cut(s) 30
BstDEI CTNAG 3 cut(s) 96, 140, 329
BstF5I GGATG 1 cut(s) 237
BstKTI GATC 2 cut(s) 94, 328
BstMBI GATC 2 cut(s) 91, 325
BstSCI CCNGG 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 125
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BstZ17I GTATAC 1 cut(s) 397
BsuI GTATCC 1 cut(s) 292
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 31
CviAII CATG 3 cut(s) 16, 181, 284
CviJI RGCY 4 cut(s) 76, 240, 262, 415
CviKI_1 RGCY 4 cut(s) 76, 240, 262, 415
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 3 cut(s) 96, 140, 329
DpnI GATC 2 cut(s) 93, 327
DpnII GATC 2 cut(s) 91, 325
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 77
FaeI CATG 3 cut(s) 19, 184, 287
FaiI YATR 6 cut(s) 17, 182, 225, 285, 397, 401
FatI CATG 3 cut(s) 15, 180, 283
FblI GTMKAC 1 cut(s) 396
FokI GGATG 1 cut(s) 244
FspBI CTAG 1 cut(s) 107
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 58
Hin1II CATG 3 cut(s) 19, 184, 287
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 1 cut(s) 199
HpaII CCGG 1 cut(s) 58
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 3 cut(s) 173, 220, 397
Hpy188I TCNGA 2 cut(s) 123, 268
Hpy8I GTNNAC 3 cut(s) 173, 220, 397
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4V TGCA 1 cut(s) 350
HpyF3I CTNAG 3 cut(s) 96, 140, 329
Hsp92II CATG 3 cut(s) 19, 184, 287
Kzo9I GATC 2 cut(s) 91, 325
LpnPI CCDG 1 cut(s) 71
LweI GCATC 2 cut(s) 198, 259
MaeI CTAG 1 cut(s) 107
MalI GATC 2 cut(s) 93, 327
MboI GATC 2 cut(s) 91, 325
MboII GAAGA 5 cut(s) 19, 22, 95, 101, 125
MflI RGATCY 1 cut(s) 91
MluCI AATT 3 cut(s) 38, 64, 402
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 7 cut(s) 73, 79, 121, 147, 251, 274, 313
MseI TTAA 3 cut(s) 42, 54, 421
MspI CCGG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 59
NciI CCSGG 1 cut(s) 59
NdeII GATC 2 cut(s) 91, 325
NlaIII CATG 3 cut(s) 19, 184, 287
PaeR7I CTCGAG 1 cut(s) 77
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PspPI GGNCC 1 cut(s) 46
PspXI VCTCGAGB 1 cut(s) 77
PsuI RGATCY 1 cut(s) 91
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SaqAI TTAA 3 cut(s) 42, 54, 421
Sau3AI GATC 2 cut(s) 91, 325
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 59
SetI ASST 4 cut(s) 78, 172, 305, 396
SfaNI GCATC 2 cut(s) 198, 259
Sfr274I CTCGAG 1 cut(s) 77
SinI GGWCC 1 cut(s) 46
SlaI CTCGAG 1 cut(s) 77
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SpeI ACTAGT 1 cut(s) 106
Sse9I AATT 3 cut(s) 38, 64, 402
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 322
TaqI TCGA 2 cut(s) 78, 243
TasI AATT 3 cut(s) 38, 64, 402
TatI WGTACW 1 cut(s) 30
Tru1I TTAA 3 cut(s) 42, 54, 421
Tru9I TTAA 3 cut(s) 42, 54, 421
TscAI CASTG 1 cut(s) 325
TspGWI ACGGA 2 cut(s) 141, 324
TspRI CASTG 1 cut(s) 325
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 1 cut(s) 64
XhoI CTCGAG 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 396
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.