Rh2AG147800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001040
Physical Location & Seq
Reverse (-)
13537764 .. 13539602
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG147800.1

Sequence Viewer

Length: 603 bp
ATGGGAAATCATAAAGGAAAGAAAATGGAGACGAGTTGGGTTGATTCAGATGATGAGCTGGGATTTGATTCAGATGATGAGATGGGTTCGGATAATGAAATCGAAACAGTGGACGGAGAAGACTTGAAGCTTATGCAACTTGGTCGGCCCTTCCCTTTCGTTTGCTTTTCTGAACCAGGTAAAGGGGGCCTTGCCGTTGGCTATACTGCTAAAGGATTAGCGGGTTACTTCTTTGCTCCTGATGGCAAGCTGCAGTTTCAAGGGCTACTTCACTATTTGAACAAAAACCCTGATATTCCCTCTGCGTATCAGGCCAACTTTGGCGGAAAGGTTGTCCATGCGGGTGGCAACAACTTCTGCCTTGTGTTGAATGGTTTTATCGACCCAGGTTCATGGTCTTTGGGGGTAGCAATATTTGATGTGAAGTTTAAGATAGCCAATGGTGATGGAGGAGGGAAAGGCTTCTACCATGAAAATCCACTGCATTATCATCACTTTAACGATATTGATTCATGGTTTACTAATCCATATCAGTTTGGGAAGAAGTACCGGAATCCAAGGCTTTATAGTTACTATGAATTCCAGGATGCTTTCATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.36

Weight (kDa)

5.13

Isoelectric Point (pI)

24.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 221, 324, 341
AcsI RAATTY 1 cut(s) 578
AfaI GTAC 1 cut(s) 548
AfiI CCNNNNNNNGG 1 cut(s) 182
AgsI TTSAA 4 cut(s) 127, 260, 280, 370
AjnI CCWGG 3 cut(s) 175, 385, 582
AluBI AGCT 3 cut(s) 58, 130, 250
AluI AGCT 3 cut(s) 58, 130, 250
Alw26I GTCTC 1 cut(s) 23
AoxI GGCC 3 cut(s) 146, 187, 312
ApeKI GCWGC 1 cut(s) 250
ApoI RAATTY 1 cut(s) 578
Asp700I GAANNNNTTC 1 cut(s) 461
AspS9I GGNCC 2 cut(s) 147, 187
AsuHPI GGTGA 1 cut(s) 455
BbsI GAAGAC 1 cut(s) 126
BbvI GCAGC 1 cut(s) 237
BccI CCATC 3 cut(s) 76, 236, 440
BceAI ACGGC 1 cut(s) 179
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BciT130I CCWGG 3 cut(s) 177, 387, 584
BcoDI GTCTC 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 251
BisI GCNGC 1 cut(s) 251
BlsI GCNGC 1 cut(s) 252
Bme1390I CCNGG 3 cut(s) 177, 387, 584
BmgT120I GGNCC 2 cut(s) 147, 187
BmiI GGNNCC 1 cut(s) 188
BmrFI CCNGG 3 cut(s) 177, 387, 584
BmsI GCATC 1 cut(s) 577
BpiI GAAGAC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 385, 557
BsaWI WCCGGW 1 cut(s) 549
Bsc4I CCNNNNNNNGG 1 cut(s) 182
BseBI CCWGG 3 cut(s) 177, 387, 584
BseDI CCNNGG 2 cut(s) 385, 557
BseGI GGATG 1 cut(s) 592
BseLI CCNNNNNNNGG 1 cut(s) 182
BseRI GAGGAG 1 cut(s) 465
BseXI GCAGC 1 cut(s) 237
BseYI CCCAGC 1 cut(s) 58
BshFI GGCC 3 cut(s) 148, 189, 314
BsiSI CCGG 1 cut(s) 550
BslI CCNNNNNNNGG 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 23
BsmBI CGTCTC 1 cut(s) 23
BsnI GGCC 3 cut(s) 148, 189, 314
BspACI CCGC 3 cut(s) 221, 324, 341
BspANI GGCC 3 cut(s) 148, 189, 314
BspLI GGNNCC 1 cut(s) 188
BspMAI CTGCAG 1 cut(s) 255
BssECI CCNNGG 2 cut(s) 385, 557
BssT1I CCWWGG 1 cut(s) 557
Bst2UI CCWGG 3 cut(s) 177, 387, 584
Bst4CI ACNGT 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 248
BstF5I GGATG 1 cut(s) 592
BstMAI GTCTC 1 cut(s) 23
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 3 cut(s) 177, 387, 584
BstSCI CCNGG 3 cut(s) 175, 385, 582
BstSFI CTRYAG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 237
BstV2I GAAGAC 1 cut(s) 126
BstXI CCANNNNNNTGG 2 cut(s) 344, 393
BsuRI GGCC 3 cut(s) 148, 189, 314
BtsCI GGATG 1 cut(s) 592
BtsI GCAGTG 1 cut(s) 479
BtsIMutI CAGTG 2 cut(s) 114, 479
Cac8I GCNNGC 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 147, 187
CsiI ACCWGGT 1 cut(s) 175
Csp6I GTAC 1 cut(s) 547
CviAII CATG 5 cut(s) 338, 393, 470, 513, 598
CviQI GTAC 1 cut(s) 547
EciI GGCGGA 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 557
EcoO109I RGGNCCY 1 cut(s) 187
EcoRI GAATTC 1 cut(s) 578
EcoRII CCWGG 3 cut(s) 175, 385, 582
EcoT14I CCWWGG 1 cut(s) 557
ErhI CCWWGG 1 cut(s) 557
Esp3I CGTCTC 1 cut(s) 23
FaeI CATG 5 cut(s) 341, 396, 473, 516, 601
FalI AAGNNNNNCTT 4 cut(s) 174, 206, 252, 284
FatI CATG 5 cut(s) 337, 392, 469, 512, 597
FauI CCCGC 2 cut(s) 214, 334
Fnu4HI GCNGC 1 cut(s) 251
FokI GGATG 1 cut(s) 599
Fsp4HI GCNGC 1 cut(s) 251
GluI GCNGC 1 cut(s) 251
GsaI CCCAGC 1 cut(s) 62
HaeIII GGCC 3 cut(s) 148, 189, 314
HapII CCGG 1 cut(s) 550
Hin1II CATG 5 cut(s) 341, 396, 473, 516, 601
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 4 cut(s) 44, 68, 509, 553
HpaII CCGG 1 cut(s) 550
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 2 cut(s) 112, 519
Hpy188I TCNGA 4 cut(s) 49, 73, 91, 172
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 2 cut(s) 112, 519
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 3 cut(s) 136, 253, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
Hsp92II CATG 5 cut(s) 341, 396, 473, 516, 601
LmnI GCTCC 1 cut(s) 241
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 577
MabI ACCWGGT 1 cut(s) 175
MaeIII GTNAC 2 cut(s) 224, 569
MboII GAAGA 2 cut(s) 131, 553
MluCI AATT 1 cut(s) 578
MnlI CCTC 3 cut(s) 310, 443, 446
MroXI GAANNNNTTC 1 cut(s) 461
MseI TTAA 2 cut(s) 429, 498
MslI CAYNNNNRTG 1 cut(s) 342
MspI CCGG 1 cut(s) 550
MspR9I CCNGG 3 cut(s) 177, 387, 584
MvaI CCWGG 3 cut(s) 177, 387, 584
MwoI GCNNNNNNNGC 1 cut(s) 311
NlaIII CATG 5 cut(s) 341, 396, 473, 516, 601
NlaIV GGNNCC 1 cut(s) 188
PdmI GAANNNNTTC 1 cut(s) 461
PfeI GAWTC 4 cut(s) 44, 68, 509, 553
PfoI TCCNGGA 1 cut(s) 582
PkrI GCNGC 1 cut(s) 252
Psp6I CCWGG 3 cut(s) 175, 385, 582
PspFI CCCAGC 1 cut(s) 58
PspGI CCWGG 3 cut(s) 175, 385, 582
PspN4I GGNNCC 1 cut(s) 188
PspPI GGNCC 2 cut(s) 147, 187
PstI CTGCAG 1 cut(s) 255
RsaI GTAC 1 cut(s) 548
RsaNI GTAC 1 cut(s) 547
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 2 cut(s) 429, 498
SatI GCNGC 1 cut(s) 251
Sau96I GGNCC 2 cut(s) 147, 187
ScrFI CCNGG 3 cut(s) 177, 387, 584
SetI ASST 6 cut(s) 60, 132, 181, 252, 333, 391
SexAI ACCWGGT 1 cut(s) 175
SfaNI GCATC 1 cut(s) 577
SfcI CTRYAG 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 342
Sse9I AATT 1 cut(s) 578
SsiI CCGC 3 cut(s) 221, 324, 341
SspI AATATT 1 cut(s) 414
StyD4I CCNGG 3 cut(s) 175, 385, 582
StyI CCWWGG 1 cut(s) 557
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 2 cut(s) 102, 381
TasI AATT 1 cut(s) 578
TfiI GAWTC 4 cut(s) 44, 68, 509, 553
Tru1I TTAA 2 cut(s) 429, 498
Tru9I TTAA 2 cut(s) 429, 498
TscAI CASTG 2 cut(s) 114, 486
TseI GCWGC 1 cut(s) 250
TspDTI ATGAA 6 cut(s) 111, 381, 486, 501, 583, 591
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 2 cut(s) 114, 486
XapI RAATTY 1 cut(s) 578
XmnI GAANNNNTTC 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.