RLG00000004523

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001040
Physical Location & Seq
Reverse (-)
60003690 .. 60005822
2133 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004523

Sequence Viewer

Length: 1404 bp
ATGAGTGAGAGTCCTGTTTTGGAATTTTACGAGGCACCTTTGGCAGTGGTGAGAATGGAGATTTCCATGGAAGAAGTGAGACCTAAGGAAGAGGAGGCCGTGAAAATGGCGATAATGGAGAGCCAGTGGCCGAGTTTGTACAAGGGGGAACTCTATCTGTACATTCAATTTAAGGACCATCTTAACTGGGTGAATCTTGACAAGCTCAAGCGAAAAGAGGAACCTAAGTTGGAACTAGTGGTTGATTATCAAACGGAGGAACTTCCCCTTGGAATGTGTCCGTTCTTAGAGATTTCAGGTAAAAAGTACATGGTTGGGGGAGAAAGGACTCGTAAGACACCTGACTCTAAGTATGATTGGGAATATCAACTAGATTGGGAAGTATATAGGCCATCCGATGCCCTCAATTCTCATGTTTTTGTTTTGGATCCTTTTGAGGGAAAGATCACTTTTGATCCTAGTTTTCCCAGAGCAAATGCAGCAAAGACCAATGCTAGAGTCTTAGCTACTATTGACCAAAAGGTGTACGTACTCGGTACTCAGCCTTACTACTACTGGGGTGTGCTTCCTGATCCGGCATTCGAGTGCTTTCACATTGATGAGAATAGGTGGGAGGCTCTGCCTGCGCCTCCTGATTATTACGACCCTCCAATGATGCGGAGTGCTGCTCTTAGATACTTCTATCATTTTGTGGTTGGCCGGAAGATTTATGTGAACACCTTTCAGGCACTCTTGTGTTTCAACGTTGATGAACCCTCCAAAAGATGGCAATGGGTTGGGGATTTAAGATGGCGGATTGATTTCGGCCATTCAGATGGTGAAGAAGAGCTAGGACATGAGCCCGATGACGATGACTTGGCACCTTTCACACCCTCTTATCCCTACCTTTCAATTTGCTTTGTGGAACCAGGAAAAGGTGGCCTAGCTGTTGGTTACACCACTAAAGGGTTGGTGGGATATGTCTTTGATTACTATGGCAACCTGATATTTCAGCAGCTGCTCCAGCATCATAATTCTCGTCTTCCTTCTCCGAATCAGATGAGCTTTGGGGGAAAAGTTGTATATGTGGGTGGTGACAAGTTTTGTCTCATTTTGTCAGGAAAAATTGGCAAACGTTCATGGTCGTTAGCTGTGGCAACCTTTCAACTAACCTATACTATGCTGTTTTTTGATGGTCTATTCCACGAGGTTGAACTATCTTATCGTCAATTCGATGACATTGATTCACAATACGCTAATATTCATCTATATGAGAAGAACTACAAGTTCCCAATGCTTTATGATTACATAACTTTGCAGGATGCTTTCATCATGTATGTTGAATCTAAGATTGAGCCTAAGGGCAAGCAGAAACATGAGGCAGATAGCATGAAACATGACACGAAGAAGCAAATTGTTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

468

Amino Acids

54.51

Weight (kDa)

5.19

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 134 - 260 5.1e-06 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 34, 859
AccB7I CCANNNNNTGG 1 cut(s) 765
AciI CCGC 2 cut(s) 658, 793
AclI AACGTT 2 cut(s) 744, 1114
AclWI GGATC 4 cut(s) 422, 435, 449, 566
AcoI YGGCCR 3 cut(s) 128, 697, 805
AcsI RAATTY 1 cut(s) 23
AfaI GTAC 6 cut(s) 140, 161, 308, 527, 531, 538
AfiI CCNNNNNNNGG 4 cut(s) 437, 765, 914, 945
AgsI TTSAA 6 cut(s) 167, 742, 891, 1145, 1193, 1322
AhlI ACTAGT 1 cut(s) 235
AjnI CCWGG 1 cut(s) 907
AjuI GAANNNNNNNTTGG 2 cut(s) 252, 284
AleI CACNNNNGTG 1 cut(s) 733
AluBI AGCT 7 cut(s) 205, 506, 829, 926, 997, 1044, 1130
AluI AGCT 7 cut(s) 205, 506, 829, 926, 997, 1044, 1130
Alw26I GTCTC 2 cut(s) 73, 1091
AlwI GGATC 4 cut(s) 422, 435, 449, 566
AlwNI CAGNNNCTG 1 cut(s) 997
AoxI GGCC 6 cut(s) 96, 128, 389, 697, 805, 919
ApeKI GCWGC 4 cut(s) 479, 665, 994, 997
ApoI RAATTY 1 cut(s) 23
AspLEI GCGC 1 cut(s) 628
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 4 cut(s) 61, 202, 830, 1085
AvaII GGWCC 1 cut(s) 175
AxyI CCTNAGG 2 cut(s) 84, 1338
BamHI GGATCC 1 cut(s) 427
BanI GGYRCC 2 cut(s) 34, 859
BanII GRGCYC 1 cut(s) 843
BauI CACGAG 1 cut(s) 1184
BbsI GAAGAC 1 cut(s) 1013
BbvI GCAGC 4 cut(s) 491, 652, 984, 1006
BccI CCATC 6 cut(s) 186, 400, 759, 783, 809, 1166
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 909
BcoDI GTCTC 2 cut(s) 73, 1091
BcuI ACTAGT 1 cut(s) 235
BfaI CTAG 6 cut(s) 236, 371, 459, 495, 830, 923
BisI GCNGC 4 cut(s) 480, 666, 995, 998
BlsI GCNGC 4 cut(s) 481, 667, 996, 999
Bme1390I CCNGG 1 cut(s) 909
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 5 cut(s) 36, 222, 429, 861, 906
BmrFI CCNGG 1 cut(s) 909
BmrI ACTGGG 2 cut(s) 196, 565
BmsI GCATC 4 cut(s) 388, 645, 1015, 1291
BmuI ACTGGG 2 cut(s) 196, 565
BpiI GAAGAC 1 cut(s) 1013
BplI GAGNNNNNCTC 2 cut(s) 652, 684
BpmI CTGGAG 1 cut(s) 986
BpuEI CTTGAG 1 cut(s) 191
BsaAI YACGTR 1 cut(s) 529
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 66, 268
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 4 cut(s) 437, 765, 914, 945
Bse1I ACTGG 3 cut(s) 124, 191, 560
Bse21I CCTNAGG 2 cut(s) 84, 1338
Bse3DI GCAATG 1 cut(s) 776
BseBI CCWGG 1 cut(s) 909
BseDI CCNNGG 2 cut(s) 66, 268
BseGI GGATG 2 cut(s) 392, 1306
BseLI CCNNNNNNNGG 4 cut(s) 437, 765, 914, 945
BseMI GCAATG 1 cut(s) 776
BseMII CTCAG 1 cut(s) 554
BseNI ACTGG 3 cut(s) 124, 191, 560
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 4 cut(s) 491, 652, 984, 1006
BshFI GGCC 6 cut(s) 98, 130, 391, 699, 807, 921
BshNI GGYRCC 2 cut(s) 34, 859
BsiSI CCGG 2 cut(s) 575, 700
BslI CCNNNNNNNGG 4 cut(s) 437, 765, 914, 945
BsmAI GTCTC 2 cut(s) 73, 1091
BsmI GAATGC 1 cut(s) 578
BsnI GGCC 6 cut(s) 98, 130, 391, 699, 807, 921
Bso31I GGTCTC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 843
Bsp1407I TGTACA 2 cut(s) 138, 159
Bsp143I GATC 4 cut(s) 427, 444, 454, 571
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 2 cut(s) 658, 793
BspANI GGCC 6 cut(s) 98, 130, 391, 699, 807, 921
BspCNI CTCAG 1 cut(s) 553
BspLI GGNNCC 5 cut(s) 36, 222, 429, 861, 906
BspPI GGATC 4 cut(s) 422, 435, 449, 566
BspQI GCTCTTC 1 cut(s) 819
BspT107I GGYRCC 2 cut(s) 34, 859
BspTNI GGTCTC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 776
BsrGI TGTACA 2 cut(s) 138, 159
BsrI ACTGG 3 cut(s) 124, 191, 560
BssECI CCNNGG 2 cut(s) 66, 268
BssMI GATC 4 cut(s) 427, 444, 454, 571
BssSI CACGAG 1 cut(s) 1184
BssT1I CCWWGG 2 cut(s) 66, 268
Bst2BI CACGAG 1 cut(s) 1184
Bst2UI CCWGG 1 cut(s) 909
Bst6I CTCTTC 2 cut(s) 84, 819
BstAUI TGTACA 2 cut(s) 138, 159
BstBAI YACGTR 1 cut(s) 529
BstC8I GCNNGC 2 cut(s) 624, 1346
BstDEI CTNAG 9 cut(s) 84, 225, 286, 348, 502, 540, 671, 1326, 1338
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 392, 1306
BstHHI GCGC 1 cut(s) 628
BstKTI GATC 4 cut(s) 430, 447, 457, 574
BstMAI GTCTC 2 cut(s) 73, 1091
BstMBI GATC 4 cut(s) 427, 444, 454, 571
BstMWI GCNNNNNNNGC 4 cut(s) 41, 479, 623, 1003
BstNI CCWGG 1 cut(s) 909
BstSCI CCNGG 1 cut(s) 907
BstSNI TACGTA 1 cut(s) 529
BstV1I GCAGC 4 cut(s) 491, 652, 984, 1006
BstV2I GAAGAC 1 cut(s) 1013
BstX2I RGATCY 1 cut(s) 427
BstXI CCANNNNNNTGG 1 cut(s) 815
BstYI RGATCY 1 cut(s) 427
Bsu36I CCTNAGG 2 cut(s) 84, 1338
BsuRI GGCC 6 cut(s) 98, 130, 391, 699, 807, 921
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 2 cut(s) 392, 1306
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 2 cut(s) 51, 131
Cac8I GCNNGC 2 cut(s) 624, 1346
CaiI CAGNNNCTG 1 cut(s) 997
CfoI GCGC 1 cut(s) 628
Cfr13I GGNCC 1 cut(s) 175
Csp6I GTAC 6 cut(s) 139, 160, 307, 526, 530, 537
CviAII CATG 9 cut(s) 67, 310, 413, 836, 1119, 1312, 1355, 1369, 1376
CviQI GTAC 6 cut(s) 139, 160, 307, 526, 530, 537
DdeI CTNAG 9 cut(s) 84, 225, 286, 348, 502, 540, 671, 1326, 1338
DpnI GATC 4 cut(s) 429, 446, 456, 573
DpnII GATC 4 cut(s) 427, 444, 454, 571
EaeI YGGCCR 3 cut(s) 128, 697, 805
Eam1104I CTCTTC 2 cut(s) 84, 819
EarI CTCTTC 2 cut(s) 84, 819
EciI GGCGGA 1 cut(s) 808
Eco105I TACGTA 1 cut(s) 529
Eco130I CCWWGG 2 cut(s) 66, 268
Eco24I GRGCYC 1 cut(s) 843
Eco31I GGTCTC 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 175
Eco81I CCTNAGG 2 cut(s) 84, 1338
EcoRII CCWGG 1 cut(s) 907
EcoT14I CCWWGG 2 cut(s) 66, 268
EcoT38I GRGCYC 1 cut(s) 843
ErhI CCWWGG 2 cut(s) 66, 268
FaeI CATG 9 cut(s) 70, 313, 416, 839, 1122, 1315, 1358, 1372, 1379
FatI CATG 9 cut(s) 66, 309, 412, 835, 1118, 1311, 1354, 1368, 1375
Fnu4HI GCNGC 4 cut(s) 480, 666, 995, 998
FokI GGATG 2 cut(s) 379, 1313
FriOI GRGCYC 1 cut(s) 843
Fsp4HI GCNGC 4 cut(s) 480, 666, 995, 998
FspBI CTAG 6 cut(s) 236, 371, 459, 495, 830, 923
GlaI GCGC 1 cut(s) 627
GluI GCNGC 4 cut(s) 480, 666, 995, 998
GsuI CTGGAG 1 cut(s) 986
HaeIII GGCC 6 cut(s) 98, 130, 391, 699, 807, 921
HapII CCGG 2 cut(s) 575, 700
HhaI GCGC 1 cut(s) 628
Hin1II CATG 9 cut(s) 70, 313, 416, 839, 1122, 1315, 1358, 1372, 1379
Hin6I GCGC 1 cut(s) 626
HinP1I GCGC 1 cut(s) 626
HinfI GANTC 8 cut(s) 10, 193, 328, 344, 498, 1033, 1223, 1322
HpaII CCGG 2 cut(s) 575, 700
HphI GGTGA 4 cut(s) 61, 202, 830, 1085
Hpy166II GTNNAC 2 cut(s) 526, 715
Hpy188I TCNGA 4 cut(s) 397, 814, 1032, 1038
Hpy188III TCNNGA 4 cut(s) 197, 569, 632, 1098
Hpy8I GTNNAC 2 cut(s) 526, 715
HpyAV CCTTC 1 cut(s) 1035
HpyCH4IV ACGT 3 cut(s) 528, 744, 1114
HpyCH4V TGCA 2 cut(s) 479, 1297
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 479, 623, 1003
HpyF3I CTNAG 9 cut(s) 84, 225, 286, 348, 502, 540, 671, 1326, 1338
HpySE526I ACGT 3 cut(s) 528, 744, 1114
Hsp92II CATG 9 cut(s) 70, 313, 416, 839, 1122, 1315, 1358, 1372, 1379
HspAI GCGC 1 cut(s) 626
Kzo9I GATC 4 cut(s) 427, 444, 454, 571
LguI GCTCTTC 1 cut(s) 819
LmnI GCTCC 1 cut(s) 1005
Lsp1109I GCAGC 4 cut(s) 491, 652, 984, 1006
LweI GCATC 4 cut(s) 388, 645, 1015, 1291
MaeI CTAG 6 cut(s) 236, 371, 459, 495, 830, 923
MaeII ACGT 3 cut(s) 528, 744, 1114
MaeIII GTNAC 2 cut(s) 932, 1073
MalI GATC 4 cut(s) 429, 446, 456, 573
MboI GATC 4 cut(s) 427, 444, 454, 571
MboII GAAGA 8 cut(s) 83, 101, 715, 833, 836, 1013, 1267, 1396
MflI RGATCY 1 cut(s) 427
MhlI GDGCHC 1 cut(s) 843
MluCI AATT 8 cut(s) 23, 167, 406, 891, 1012, 1104, 1208, 1392
MlyI GAGTC 4 cut(s) 19, 322, 338, 507
MmeI TCCRAC 1 cut(s) 210
MseI TTAA 3 cut(s) 171, 183, 785
MslI CAYNNNNRTG 5 cut(s) 583, 597, 733, 813, 1248
MspA1I CMGCKG 1 cut(s) 997
MspI CCGG 2 cut(s) 575, 700
MspR9I CCNGG 1 cut(s) 909
Mva1269I GAATGC 1 cut(s) 578
MvaI CCWGG 1 cut(s) 909
MwoI GCNNNNNNNGC 4 cut(s) 41, 479, 623, 1003
NcoI CCATGG 1 cut(s) 66
NdeII GATC 4 cut(s) 427, 444, 454, 571
NlaIII CATG 9 cut(s) 70, 313, 416, 839, 1122, 1315, 1358, 1372, 1379
NlaIV GGNNCC 5 cut(s) 36, 222, 429, 861, 906
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 1073
OliI CACNNNNGTG 1 cut(s) 733
PciSI GCTCTTC 1 cut(s) 819
PctI GAATGC 1 cut(s) 578
PfeI GAWTC 4 cut(s) 193, 1033, 1223, 1322
PflMI CCANNNNNTGG 1 cut(s) 765
PkrI GCNGC 4 cut(s) 481, 667, 996, 999
PleI GAGTC 4 cut(s) 18, 322, 338, 506
PpsI GAGTC 4 cut(s) 18, 322, 338, 506
Ppu21I YACGTR 1 cut(s) 529
Psp1406I AACGTT 2 cut(s) 744, 1114
Psp6I CCWGG 1 cut(s) 907
PspGI CCWGG 1 cut(s) 907
PspN4I GGNNCC 5 cut(s) 36, 222, 429, 861, 906
PspPI GGNCC 1 cut(s) 175
PstNI CAGNNNCTG 1 cut(s) 997
PsuI RGATCY 1 cut(s) 427
PvuII CAGCTG 1 cut(s) 997
RsaI GTAC 6 cut(s) 140, 161, 308, 527, 531, 538
RsaNI GTAC 6 cut(s) 139, 160, 307, 526, 530, 537
RseI CAYNNNNRTG 5 cut(s) 583, 597, 733, 813, 1248
SapI GCTCTTC 1 cut(s) 819
SaqAI TTAA 3 cut(s) 171, 183, 785
SatI GCNGC 4 cut(s) 480, 666, 995, 998
Sau3AI GATC 4 cut(s) 427, 444, 454, 571
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 4 cut(s) 19, 322, 338, 507
ScrFI CCNGG 1 cut(s) 909
SduI GDGCHC 1 cut(s) 843
SfaNI GCATC 4 cut(s) 388, 645, 1015, 1291
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 5 cut(s) 583, 597, 733, 813, 1248
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SnaBI TACGTA 1 cut(s) 529
SpeI ACTAGT 1 cut(s) 235
Sse9I AATT 8 cut(s) 23, 167, 406, 891, 1012, 1104, 1208, 1392
SsiI CCGC 2 cut(s) 658, 793
SspI AATATT 1 cut(s) 1240
SspMI CTAG 6 cut(s) 236, 371, 459, 495, 830, 923
StyD4I CCNGG 1 cut(s) 907
StyI CCWWGG 2 cut(s) 66, 268
TaiI ACGT 3 cut(s) 531, 747, 1117
TaqI TCGA 2 cut(s) 582, 1212
TasI AATT 8 cut(s) 23, 167, 406, 891, 1012, 1104, 1208, 1392
TatI WGTACW 3 cut(s) 138, 159, 306
TfiI GAWTC 4 cut(s) 193, 1033, 1223, 1322
Tru1I TTAA 3 cut(s) 171, 183, 785
Tru9I TTAA 3 cut(s) 171, 183, 785
TscAI CASTG 2 cut(s) 51, 131
TseFI GTSAC 1 cut(s) 1073
TseI GCWGC 4 cut(s) 479, 665, 994, 997
Tsp45I GTSAC 1 cut(s) 1073
TspDTI ATGAA 5 cut(s) 765, 1107, 1232, 1297, 1385
TspGWI ACGGA 2 cut(s) 269, 270
TspRI CASTG 2 cut(s) 51, 131
Van91I CCANNNNNTGG 1 cut(s) 765
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 1 cut(s) 23
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XspI CTAG 6 cut(s) 236, 371, 459, 495, 830, 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.