Rh2BG412300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001040
Physical Location & Seq
Reverse (-)
58311750 .. 58312958
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG412300.1

Sequence Viewer

Length: 987 bp
ATGGGGGAGAAGGTCGAAAACTATTTGTACTTGCAATTTAAGGAACATCTTAGAAGGGTGAATCTTAACAAGCTCGAGGAGCAAAAGGAATCTCCTGAGTTTGAACTAGTGGCAGATTTTCTGGAGGAGAAACTCCCCTATGGAATGTGTGTTTTTTTGCAAGATTCGAATAAATTGTACATGGTTGGAGGAGAAAGGATTCGGAAGAATGAAACAGCTGGAAGGTATTGGTGGCAAGGATTACCCGTTGCTGCAAACGAATTTGACCCCTCTGGCCTCACTGGTGATCTTTTTGTGTTAGATTCCTCCAACGGAAAAATCTCTGCTGCTCCTGGTTTTCCAAAACCAAAAGGACCAAAGATCAATGCCAAAGCTTTGGCCACCATCGGTGACAAGTCCCCACCTAAATGGGAATTCATAGTAGATGCAAAGTGGCATTATGATCGGGACACCTCATATGAAACAGAAGTGGAAATGGTAGACCACAAGATTGAGGACTCCTCACTGCCTCTGATACCGGCTTGGCCCTACCATTCTATATGTTTTGCAGAACCGGGAAAAGGGGGCCTCGCCGTTGGCTATACTGCTCAAGGATTAGTGGGTTACTTCTTTGCGCCTAATGGCGACCTTCTGTATCAAGAGCCACTTAATCAGTTGAACAGCAACTCTAAGCTTCCCTCCCCCGATAACTATTTCTTTGGTGGAAAAGTTTGCTATGTAGGTGAAAACAAATTCTGTCTCATTCTATCCGGAGAAATTGATCAAACTTCAAGGTCGTTGGCTGTAGCAACTTTTGATGTGAAATGGAAAGCGGATGTTCACAATGGTGATGGAGGAGGCTTCTACCATGATCTTCTTCTGTGTTATCATCAGTTTGACAATATTAATTCGTCTTTTTCTAATGCTTGCAAATATGAGAACAACGAGTCTCCGAGGCTTTATGATTACTTCAATTTCCAGGATGACTTCACCAACTATTTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

328

Amino Acids

37.16

Weight (kDa)

4.93

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 480
AccIII TCCGGA 1 cut(s) 749
AciI CCGC 1 cut(s) 812
AcoI YGGCCR 1 cut(s) 378
AcsI RAATTY 3 cut(s) 260, 413, 731
AfaI GTAC 2 cut(s) 29, 179
AfiI CCNNNNNNNGG 1 cut(s) 560
AgsI TTSAA 4 cut(s) 104, 658, 771, 952
AhlI ACTAGT 1 cut(s) 106
AjnI CCWGG 2 cut(s) 331, 957
AleI CACNNNNGTG 1 cut(s) 825
AluBI AGCT 4 cut(s) 73, 218, 374, 673
AluI AGCT 4 cut(s) 73, 218, 374, 673
Alw26I GTCTC 2 cut(s) 743, 933
Ama87I CYCGRG 1 cut(s) 74
Aor13HI TCCGGA 1 cut(s) 749
AoxI GGCC 4 cut(s) 274, 378, 524, 565
ApeKI GCWGC 2 cut(s) 251, 326
ApoI RAATTY 3 cut(s) 260, 413, 731
AseI ATTAAT 1 cut(s) 885
Asp700I GAANNNNTTC 1 cut(s) 198
AspLEI GCGC 1 cut(s) 616
AspS9I GGNCC 3 cut(s) 353, 525, 565
AsuC2I CCSGG 1 cut(s) 555
AsuHPI GGTGA 6 cut(s) 70, 296, 401, 734, 839, 961
AsuII TTCGAA 1 cut(s) 167
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 353
BalI TGGCCA 1 cut(s) 380
BbvI GCAGC 2 cut(s) 238, 313
BccI CCATC 2 cut(s) 392, 824
BceAI ACGGC 1 cut(s) 557
BcgI CGANNNNNNTGC 2 cut(s) 425, 459
BciT130I CCWGG 2 cut(s) 333, 959
BclI TGATCA 1 cut(s) 760
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 2 cut(s) 743, 933
BcuI ACTAGT 1 cut(s) 106
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 783
BisI GCNGC 2 cut(s) 252, 327
BlsI GCNGC 2 cut(s) 253, 328
Bme1390I CCNGG 3 cut(s) 333, 555, 959
Bme18I GGWCC 1 cut(s) 353
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 3 cut(s) 353, 525, 565
BmiI GGNNCC 1 cut(s) 566
BmrFI CCNGG 3 cut(s) 333, 555, 959
BmsI GCATC 1 cut(s) 415
BplI GAGNNNNNCTC 2 cut(s) 485, 517
BpmI CTGGAG 1 cut(s) 143
Bpu14I TTCGAA 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 573
BpuMI CCSGG 1 cut(s) 555
BsaJI CCNNGG 1 cut(s) 932
BsaWI WCCGGW 1 cut(s) 749
Bsc4I CCNNNNNNNGG 1 cut(s) 560
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 1 cut(s) 286
BseAI TCCGGA 1 cut(s) 749
BseBI CCWGG 2 cut(s) 333, 959
BseDI CCNNGG 1 cut(s) 932
BseGI GGATG 2 cut(s) 820, 967
BseLI CCNNNNNNNGG 1 cut(s) 560
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 5 cut(s) 92, 140, 204, 490, 849
BseXI GCAGC 2 cut(s) 238, 313
BshFI GGCC 4 cut(s) 276, 380, 526, 567
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 3 cut(s) 518, 554, 750
BslFI GGGAC 2 cut(s) 382, 461
BslI CCNNNNNNNGG 1 cut(s) 560
BsmAI GTCTC 2 cut(s) 743, 933
BsmFI GGGAC 2 cut(s) 382, 461
BsnI GGCC 4 cut(s) 276, 380, 526, 567
BsoBI CYCGRG 1 cut(s) 74
Bsp119I TTCGAA 1 cut(s) 167
Bsp13I TCCGGA 1 cut(s) 749
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 5 cut(s) 286, 360, 442, 760, 850
BspACI CCGC 1 cut(s) 812
BspANI GGCC 4 cut(s) 276, 380, 526, 567
BspCNI CTCAG 1 cut(s) 88
BspEI TCCGGA 1 cut(s) 749
BspLI GGNNCC 1 cut(s) 566
BspT104I TTCGAA 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 517
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 1 cut(s) 932
BssMI GATC 5 cut(s) 286, 360, 442, 760, 850
Bst2UI CCWGG 2 cut(s) 333, 959
BstAUI TGTACA 1 cut(s) 177
BstBI TTCGAA 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 907
BstDEI CTNAG 3 cut(s) 50, 96, 669
BstF5I GGATG 2 cut(s) 820, 967
BstHHI GCGC 1 cut(s) 616
BstKTI GATC 5 cut(s) 289, 363, 445, 763, 853
BstMAI GTCTC 2 cut(s) 743, 933
BstMBI GATC 5 cut(s) 286, 360, 442, 760, 850
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 2 cut(s) 333, 959
BstSCI CCNGG 3 cut(s) 331, 553, 957
BstSFI CTRYAG 1 cut(s) 783
BstV1I GCAGC 2 cut(s) 238, 313
BstXI CCANNNNNNTGG 2 cut(s) 376, 408
BsuRI GGCC 4 cut(s) 276, 380, 526, 567
BtsCI GGATG 2 cut(s) 820, 967
BtsI GCAGTG 1 cut(s) 503
BtsIMutI CAGTG 2 cut(s) 279, 503
Cac8I GCNNGC 1 cut(s) 907
CfoI GCGC 1 cut(s) 616
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 3 cut(s) 353, 525, 565
Csp6I GTAC 2 cut(s) 28, 178
CviAII CATG 2 cut(s) 181, 848
CviQI GTAC 2 cut(s) 28, 178
DdeI CTNAG 3 cut(s) 50, 96, 669
DpnI GATC 5 cut(s) 288, 362, 444, 762, 852
DpnII GATC 5 cut(s) 286, 360, 442, 760, 850
EaeI YGGCCR 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 353
Eco88I CYCGRG 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 565
EcoRI GAATTC 1 cut(s) 413
EcoRII CCWGG 2 cut(s) 331, 957
FaeI CATG 2 cut(s) 184, 851
FalI AAGNNNNNCTT 2 cut(s) 630, 662
FaqI GGGAC 2 cut(s) 382, 461
FatI CATG 2 cut(s) 180, 847
FauNDI CATATG 1 cut(s) 457
FbaI TGATCA 1 cut(s) 760
FblI GTMKAC 1 cut(s) 480
Fnu4HI GCNGC 2 cut(s) 252, 327
FokI GGATG 2 cut(s) 827, 974
Fsp4HI GCNGC 2 cut(s) 252, 327
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 615
GluI GCNGC 2 cut(s) 252, 327
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 4 cut(s) 276, 380, 526, 567
HapII CCGG 3 cut(s) 518, 554, 750
HhaI GCGC 1 cut(s) 616
Hin1II CATG 2 cut(s) 184, 851
Hin6I GCGC 1 cut(s) 614
HinP1I GCGC 1 cut(s) 614
HindIII AAGCTT 2 cut(s) 372, 671
HinfI GANTC 7 cut(s) 61, 89, 164, 199, 302, 497, 926
HpaII CCGG 3 cut(s) 518, 554, 750
HphI GGTGA 6 cut(s) 70, 296, 401, 734, 839, 961
Hpy166II GTNNAC 2 cut(s) 481, 820
Hpy188I TCNGA 3 cut(s) 204, 513, 933
Hpy188III TCNNGA 6 cut(s) 95, 122, 446, 638, 750, 984
Hpy8I GTNNAC 2 cut(s) 481, 820
HpyAV CCTTC 4 cut(s) 4, 48, 216, 638
HpyCH4V TGCA 6 cut(s) 34, 160, 254, 428, 548, 909
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 3 cut(s) 50, 96, 669
Hsp92II CATG 2 cut(s) 184, 851
HspAI GCGC 1 cut(s) 614
Kpn2I TCCGGA 1 cut(s) 749
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 5 cut(s) 286, 360, 442, 760, 850
LmnI GCTCC 2 cut(s) 79, 334
Lsp1109I GCAGC 2 cut(s) 238, 313
LweI GCATC 1 cut(s) 415
MaeI CTAG 1 cut(s) 107
MaeIII GTNAC 2 cut(s) 389, 602
MalI GATC 5 cut(s) 288, 362, 444, 762, 852
MboI GATC 5 cut(s) 286, 360, 442, 760, 850
MboII GAAGA 3 cut(s) 217, 845, 848
MlsI TGGCCA 1 cut(s) 380
MluCI AATT 8 cut(s) 35, 173, 260, 413, 731, 756, 886, 952
MluNI TGGCCA 1 cut(s) 380
MlyI GAGTC 2 cut(s) 491, 935
MmeI TCCRAC 2 cut(s) 166, 333
Mox20I TGGCCA 1 cut(s) 380
MroI TCCGGA 1 cut(s) 749
MroXI GAANNNNTTC 1 cut(s) 198
MscI TGGCCA 1 cut(s) 380
MseI TTAA 4 cut(s) 39, 66, 648, 885
MslI CAYNNNNRTG 2 cut(s) 406, 825
Msp20I TGGCCA 1 cut(s) 380
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 3 cut(s) 518, 554, 750
MspR9I CCNGG 3 cut(s) 333, 555, 959
MvaI CCWGG 2 cut(s) 333, 959
MwoI GCNNNNNNNGC 1 cut(s) 79
NciI CCSGG 1 cut(s) 555
NdeI CATATG 1 cut(s) 457
NdeII GATC 5 cut(s) 286, 360, 442, 760, 850
NlaIII CATG 2 cut(s) 184, 851
NlaIV GGNNCC 1 cut(s) 566
NmuCI GTSAC 1 cut(s) 389
NspV TTCGAA 1 cut(s) 167
OliI CACNNNNGTG 1 cut(s) 825
PaeR7I CTCGAG 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 5 cut(s) 61, 89, 164, 199, 302
PfoI TCCNGGA 1 cut(s) 957
PkrI GCNGC 2 cut(s) 253, 328
PleI GAGTC 2 cut(s) 491, 934
PpsI GAGTC 2 cut(s) 491, 934
PshBI ATTAAT 1 cut(s) 885
Psp6I CCWGG 2 cut(s) 331, 957
PspGI CCWGG 2 cut(s) 331, 957
PspN4I GGNNCC 1 cut(s) 566
PspPI GGNCC 3 cut(s) 353, 525, 565
PspXI VCTCGAGB 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 2 cut(s) 29, 179
RsaNI GTAC 2 cut(s) 28, 178
RseI CAYNNNNRTG 2 cut(s) 406, 825
SaqAI TTAA 4 cut(s) 39, 66, 648, 885
SatI GCNGC 2 cut(s) 252, 327
Sau3AI GATC 5 cut(s) 286, 360, 442, 760, 850
Sau96I GGNCC 3 cut(s) 353, 525, 565
SchI GAGTC 2 cut(s) 491, 935
ScrFI CCNGG 3 cut(s) 333, 555, 959
SfaNI GCATC 1 cut(s) 415
SfcI CTRYAG 1 cut(s) 783
Sfr274I CTCGAG 1 cut(s) 74
SfuI TTCGAA 1 cut(s) 167
SinI GGWCC 1 cut(s) 353
SlaI CTCGAG 1 cut(s) 74
SmiMI CAYNNNNRTG 2 cut(s) 406, 825
SmlI CTYRAG 2 cut(s) 74, 588
SmoI CTYRAG 2 cut(s) 74, 588
SpeI ACTAGT 1 cut(s) 106
Sse9I AATT 8 cut(s) 35, 173, 260, 413, 731, 756, 886, 952
SsiI CCGC 1 cut(s) 812
SspI AATATT 1 cut(s) 883
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 3 cut(s) 331, 553, 957
TaqI TCGA 3 cut(s) 15, 75, 167
TasI AATT 8 cut(s) 35, 173, 260, 413, 731, 756, 886, 952
TatI WGTACW 2 cut(s) 27, 177
TfiI GAWTC 5 cut(s) 61, 89, 164, 199, 302
Tru1I TTAA 4 cut(s) 39, 66, 648, 885
Tru9I TTAA 4 cut(s) 39, 66, 648, 885
TscAI CASTG 2 cut(s) 286, 510
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 2 cut(s) 251, 326
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 3 cut(s) 225, 406, 474
TspGWI ACGGA 1 cut(s) 327
TspRI CASTG 2 cut(s) 286, 510
VpaK11BI GGWCC 1 cut(s) 353
VspI ATTAAT 1 cut(s) 885
XapI RAATTY 3 cut(s) 260, 413, 731
XhoI CTCGAG 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 480
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.