Rroxscaffold_7G00216760

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
67428084 .. 67428642
559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00216760.1

Sequence Viewer

Length: 345 bp
ATGATGAAGATGATGCAACATCTAGTAGTGCAAGTCAGGCTCATCCAAAAAGAATTAAACTACTCCACCTTGACGGCGGAGGACCTGGTGGAAGCCCTTATATTTATGACCAGAAACATGACCCAGCGTCATGGCATAGTATTGGGGGAAGCAACATTTGATGTGAAGTTTAAGATTGCCAATGGTGATGGAGGAGGGAAAGGCTTCTACCATGAAAATCCACTGCATTATCATCACTTTAACGATATTGATTCATGGTTTACTAATCCATATCAGTTTGGGAAGAAGTACCGGAATCCAAGGCTTTATAGTTACTATGAATTCCAGGATGGTTTCACCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.52

Weight (kDa)

7.02

Isoelectric Point (pI)

17.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 320
AfaI GTAC 1 cut(s) 290
AhdI GACNNNNNGTC 1 cut(s) 126
AjnI CCWGG 2 cut(s) 84, 324
ApoI RAATTY 1 cut(s) 320
Asp700I GAANNNNTTC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 2 cut(s) 197, 328
AvaII GGWCC 1 cut(s) 82
BccI CCATC 2 cut(s) 182, 323
BceAI ACGGC 1 cut(s) 90
BciT130I CCWGG 2 cut(s) 86, 326
BfaI CTAG 1 cut(s) 23
Bme1390I CCNGG 2 cut(s) 86, 326
Bme18I GGWCC 1 cut(s) 82
BmeRI GACNNNNNGTC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 82
BmrFI CCNGG 2 cut(s) 86, 326
BmsI GCATC 1 cut(s) 3
BsaJI CCNNGG 1 cut(s) 299
BsaWI WCCGGW 1 cut(s) 291
BseBI CCWGG 2 cut(s) 86, 326
BseDI CCNNGG 1 cut(s) 299
BseGI GGATG 2 cut(s) 42, 334
BseRI GAGGAG 1 cut(s) 207
BseYI CCCAGC 1 cut(s) 123
BsiSI CCGG 1 cut(s) 292
BspACI CCGC 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 299
BssT1I CCWWGG 1 cut(s) 299
Bst2UI CCWGG 2 cut(s) 86, 326
BstF5I GGATG 2 cut(s) 42, 334
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 2 cut(s) 86, 326
BstSCI CCNGG 2 cut(s) 84, 324
BstXI CCANNNNNNTGG 1 cut(s) 131
BtsCI GGATG 2 cut(s) 42, 334
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 82
CseI GACGC 1 cut(s) 116
CsiI ACCWGGT 1 cut(s) 84
Csp6I GTAC 1 cut(s) 289
CviAII CATG 5 cut(s) 118, 131, 212, 255, 340
CviJI RGCY 4 cut(s) 40, 95, 204, 304
CviKI_1 RGCY 4 cut(s) 40, 95, 204, 304
CviQI GTAC 1 cut(s) 289
DriI GACNNNNNGTC 1 cut(s) 126
Eam1105I GACNNNNNGTC 1 cut(s) 126
EciI GGCGGA 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 82
EcoRI GAATTC 1 cut(s) 320
EcoRII CCWGG 2 cut(s) 84, 324
EcoT14I CCWWGG 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 5 cut(s) 121, 134, 215, 258, 343
FatI CATG 5 cut(s) 117, 130, 211, 254, 339
FokI GGATG 2 cut(s) 29, 341
FspBI CTAG 1 cut(s) 23
GsaI CCCAGC 1 cut(s) 127
HapII CCGG 1 cut(s) 292
HgaI GACGC 1 cut(s) 116
Hin1II CATG 5 cut(s) 121, 134, 215, 258, 343
HinfI GANTC 2 cut(s) 251, 295
HpaII CCGG 1 cut(s) 292
HphI GGTGA 2 cut(s) 197, 328
Hpy166II GTNNAC 1 cut(s) 261
Hpy8I GTNNAC 1 cut(s) 261
HpyCH4V TGCA 3 cut(s) 16, 31, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
Hsp92II CATG 5 cut(s) 121, 134, 215, 258, 343
LpnPI CCDG 8 cut(s) 22, 71, 98, 124, 137, 305, 311, 338
LweI GCATC 1 cut(s) 3
MabI ACCWGGT 1 cut(s) 84
MaeI CTAG 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 311
MboII GAAGA 2 cut(s) 19, 295
MluCI AATT 2 cut(s) 53, 320
MnlI CCTC 3 cut(s) 73, 185, 188
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 3 cut(s) 56, 171, 240
MspI CCGG 1 cut(s) 292
MspR9I CCNGG 2 cut(s) 86, 326
MvaI CCWGG 2 cut(s) 86, 326
MwoI GCNNNNNNNGC 1 cut(s) 37
NlaIII CATG 5 cut(s) 121, 134, 215, 258, 343
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 2 cut(s) 251, 295
PfoI TCCNGGA 1 cut(s) 324
PpuMI RGGWCCY 1 cut(s) 82
Psp5II RGGWCCY 1 cut(s) 82
Psp6I CCWGG 2 cut(s) 84, 324
PspFI CCCAGC 1 cut(s) 123
PspGI CCWGG 2 cut(s) 84, 324
PspPI GGNCC 1 cut(s) 82
PspPPI RGGWCCY 1 cut(s) 82
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SaqAI TTAA 3 cut(s) 56, 171, 240
Sau96I GGNCC 1 cut(s) 82
ScrFI CCNGG 2 cut(s) 86, 326
SetI ASST 2 cut(s) 71, 87
SexAI ACCWGGT 1 cut(s) 84
SfaNI GCATC 1 cut(s) 3
SinI GGWCC 1 cut(s) 82
Sse9I AATT 2 cut(s) 53, 320
SsiI CCGC 1 cut(s) 77
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 2 cut(s) 84, 324
StyI CCWWGG 1 cut(s) 299
TasI AATT 2 cut(s) 53, 320
TfiI GAWTC 2 cut(s) 251, 295
Tru1I TTAA 3 cut(s) 56, 171, 240
Tru9I TTAA 3 cut(s) 56, 171, 240
TscAI CASTG 1 cut(s) 228
TspDTI ATGAA 4 cut(s) 20, 228, 243, 333
TspRI CASTG 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 82
XapI RAATTY 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.