Rh2CG372000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001040
Physical Location & Seq
Reverse (-)
50468302 .. 50470359
2058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG372000.1

Sequence Viewer

Length: 1290 bp
ATGGGGGAGAAGGTCGAAAACTATTTGTACTTGCAATTTAAGGAACATCTTAGAAGGGTGAATCTTAACAAGCTCGAGGAGCAAAAGGAATCTCCTGAGTTTGAACTAGTGGCAGATTTTCTGGAGGAGAAACTCCCCTATGGAATGTGTGTTTTTTTGCAAGATTCGAATAAATTGTACATGGTTGGAGGAGAAAGGATTCGGAAGAATGAAAAAGCTGGAAGGTATTGGTGGCAAGGATTTCCCGTTGCTGCAAACGAATTTGACCCCTCTGGCCTCACTTGTGATGTTTTTGTGTTAGATTCCTCCAACGGAAAAATCTCTGCTGCTCCTGGTTTTCCAAAACCAAAAGGACCAAAGATCAATGCCAAACCTTTGGCCACCATCGGTGACAAGGTATACGTAATGAGTTTTCGGCCATATTACTATCAAGGTACGCTTCCATCTCCGGCCTTTGAGTGCTATGATTCTGCAAAACAGTCATGGGAGGAGCTGCCTGTGCCTCCAAATTACTATCATTCGTGTTGTGCTTCTCCTACTCATGGGTTTCATTTTGTGCTGGGCCGAAAGATTTATTTGTGCACTCCTCATGGGTTCTTTTGTTACAACGTGGATCAGTCCCCACCTAAATGGGAATTCATAGTAGATGCAGAGTGGCAGTATGATTGGGACACCTCATATGAAACAGAAGTGGAAATGGTAGACAACAAGATTGAGGACTCCTCACTGCCTCTGATACCGGCTTGGCCCTACCATTCTATATGTTTTGCAGAACCGGGAAAAGGGGGCCTCGCCGTTGGCTATACTGCTCAAGGATTAGTGGGTTACTTCTTCGAGCCTAATGGCGACCTACTGTATCAAGAGCCACTTAATCAGTTGAACAGCAACTCTAAGCTTCCCTCCCCCGATAACTATTTCTTTGGTGGAAAAGTTTGCTATGTAGGTGAAAACAAATTCTGTCTCATTCTATCCGGAGAAATTGATCCAACTTCATGGTCGTTGGCTGTAGCAACTTTTGATGTGAAATGGAAAGCGGATGTTCAAAATGATGGTGATGGAGGAGGGAAACACTTCTACCATGATCTTCCTCTGTGTTATCATCAGTTTGACAATATTAATTCTTCGTATCTTTCTAATGCTTGCGAATATGAGAACAACGAGTCTCCGAGGCTTTATGATTACTTCAATTTCCAGGATGCCTTCGTCATATCCTCCGAGCCTAAGAGCCAGCGTCACCACAACCACAAGCGCAAGCGGAGTATGATGGGTGTAGGTTTTCAGTTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

429

Amino Acids

49.09

Weight (kDa)

5.24

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 94 - 224 5.1e-06 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 399, 702
AccIII TCCGGA 1 cut(s) 971
AciI CCGC 2 cut(s) 1034, 1255
AclWI GGATC 2 cut(s) 621, 977
AcoI YGGCCR 2 cut(s) 378, 416
AcsI RAATTY 3 cut(s) 260, 635, 953
AfaI GTAC 3 cut(s) 29, 179, 436
AfiI CCNNNNNNNGG 2 cut(s) 542, 782
AgsI TTSAA 4 cut(s) 104, 880, 1043, 1186
AhlI ACTAGT 1 cut(s) 106
AjnI CCWGG 2 cut(s) 331, 1191
AluBI AGCT 4 cut(s) 73, 218, 493, 895
AluI AGCT 4 cut(s) 73, 218, 493, 895
Alw21I GWGCWC 1 cut(s) 584
Alw26I GTCTC 2 cut(s) 965, 1167
Alw44I GTGCAC 1 cut(s) 580
AlwI GGATC 2 cut(s) 621, 977
Ama87I CYCGRG 1 cut(s) 74
Aor13HI TCCGGA 1 cut(s) 971
AoxI GGCC 7 cut(s) 274, 378, 416, 450, 562, 746, 787
ApaLI GTGCAC 1 cut(s) 580
ApeKI GCWGC 3 cut(s) 251, 326, 493
ApoI RAATTY 3 cut(s) 260, 635, 953
AseI ATTAAT 1 cut(s) 1116
Asp700I GAANNNNTTC 2 cut(s) 198, 1070
AspLEI GCGC 1 cut(s) 1251
AspS9I GGNCC 4 cut(s) 353, 562, 747, 787
AsuC2I CCSGG 1 cut(s) 777
AsuHPI GGTGA 5 cut(s) 70, 401, 956, 1064, 1226
AsuII TTCGAA 1 cut(s) 167
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 584
BalI TGGCCA 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 584
BbvI GCAGC 3 cut(s) 238, 313, 480
BccI CCATC 5 cut(s) 392, 451, 1043, 1049, 1258
BceAI ACGGC 1 cut(s) 779
BciT130I CCWGG 2 cut(s) 333, 1193
BcnI CCSGG 1 cut(s) 777
BcoDI GTCTC 2 cut(s) 965, 1167
BcuI ACTAGT 1 cut(s) 106
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 1005
BisI GCNGC 3 cut(s) 252, 327, 494
BlsI GCNGC 3 cut(s) 253, 328, 495
Bme1390I CCNGG 3 cut(s) 333, 777, 1193
Bme18I GGWCC 1 cut(s) 353
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 4 cut(s) 353, 562, 747, 787
BmiI GGNNCC 1 cut(s) 788
BmrFI CCNGG 3 cut(s) 333, 777, 1193
BmsI GCATC 2 cut(s) 637, 1186
BplI GAGNNNNNCTC 2 cut(s) 707, 739
BpmI CTGGAG 1 cut(s) 143
Bpu14I TTCGAA 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 795
BpuMI CCSGG 1 cut(s) 777
BsaAI YACGTR 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 1166
BsaWI WCCGGW 1 cut(s) 971
Bsc4I CCNNNNNNNGG 2 cut(s) 542, 782
Bse118I RCCGGY 1 cut(s) 739
BseAI TCCGGA 1 cut(s) 971
BseBI CCWGG 2 cut(s) 333, 1193
BseDI CCNNGG 1 cut(s) 1166
BseGI GGATG 2 cut(s) 1042, 1201
BseLI CCNNNNNNNGG 2 cut(s) 542, 782
BseMII CTCAG 1 cut(s) 87
BseRI GAGGAG 7 cut(s) 92, 140, 204, 503, 576, 712, 1074
BseSI GKGCMC 1 cut(s) 584
BseXI GCAGC 3 cut(s) 238, 313, 480
BseYI CCCAGC 1 cut(s) 559
BshFI GGCC 7 cut(s) 276, 380, 418, 452, 564, 748, 789
BsiHKAI GWGCWC 1 cut(s) 584
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 4 cut(s) 449, 740, 776, 972
BslFI GGGAC 2 cut(s) 604, 683
BslI CCNNNNNNNGG 2 cut(s) 542, 782
BsmAI GTCTC 2 cut(s) 965, 1167
BsmFI GGGAC 2 cut(s) 604, 683
BsnI GGCC 7 cut(s) 276, 380, 418, 452, 564, 748, 789
BsoBI CYCGRG 1 cut(s) 74
Bsp119I TTCGAA 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 584
Bsp13I TCCGGA 1 cut(s) 971
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 4 cut(s) 360, 613, 982, 1081
BspACI CCGC 2 cut(s) 1034, 1255
BspANI GGCC 7 cut(s) 276, 380, 418, 452, 564, 748, 789
BspCNI CTCAG 1 cut(s) 88
BspEI TCCGGA 1 cut(s) 971
BspLI GGNNCC 1 cut(s) 788
BspPI GGATC 2 cut(s) 621, 977
BspT104I TTCGAA 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 739
BsrGI TGTACA 1 cut(s) 177
BssAI RCCGGY 1 cut(s) 739
BssECI CCNNGG 1 cut(s) 1166
BssMI GATC 4 cut(s) 360, 613, 982, 1081
BssNAI GTATAC 1 cut(s) 400
Bst1107I GTATAC 1 cut(s) 400
Bst2UI CCWGG 2 cut(s) 333, 1193
Bst4CI ACNGT 2 cut(s) 480, 855
BstAUI TGTACA 1 cut(s) 177
BstBAI YACGTR 1 cut(s) 403
BstBI TTCGAA 1 cut(s) 167
BstC8I GCNNGC 3 cut(s) 1141, 1229, 1253
BstDEI CTNAG 4 cut(s) 50, 96, 891, 1221
BstF5I GGATG 2 cut(s) 1042, 1201
BstHHI GCGC 1 cut(s) 1251
BstKTI GATC 4 cut(s) 363, 616, 985, 1084
BstMAI GTCTC 2 cut(s) 965, 1167
BstMBI GATC 4 cut(s) 360, 613, 982, 1081
BstMWI GCNNNNNNNGC 2 cut(s) 79, 499
BstNI CCWGG 2 cut(s) 333, 1193
BstSCI CCNGG 3 cut(s) 331, 775, 1191
BstSFI CTRYAG 1 cut(s) 1005
BstSLI GKGCMC 1 cut(s) 584
BstSNI TACGTA 1 cut(s) 403
BstV1I GCAGC 3 cut(s) 238, 313, 480
BstXI CCANNNNNNTGG 3 cut(s) 376, 630, 993
BstZ17I GTATAC 1 cut(s) 400
BsuRI GGCC 7 cut(s) 276, 380, 418, 452, 564, 748, 789
BtsCI GGATG 2 cut(s) 1042, 1201
BtsI GCAGTG 1 cut(s) 725
BtsIMutI CAGTG 1 cut(s) 725
Cac8I GCNNGC 3 cut(s) 1141, 1229, 1253
CfoI GCGC 1 cut(s) 1251
Cfr10I RCCGGY 1 cut(s) 739
Cfr13I GGNCC 4 cut(s) 353, 562, 747, 787
CseI GACGC 1 cut(s) 1220
Csp6I GTAC 3 cut(s) 28, 178, 435
CviAII CATG 6 cut(s) 181, 483, 542, 590, 993, 1079
CviQI GTAC 3 cut(s) 28, 178, 435
DdeI CTNAG 4 cut(s) 50, 96, 891, 1221
DpnI GATC 4 cut(s) 362, 615, 984, 1083
DpnII GATC 4 cut(s) 360, 613, 982, 1081
EaeI YGGCCR 2 cut(s) 378, 416
Eco105I TACGTA 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 353
Eco88I CYCGRG 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 787
EcoRI GAATTC 1 cut(s) 635
EcoRII CCWGG 2 cut(s) 331, 1191
FaeI CATG 6 cut(s) 184, 486, 545, 593, 996, 1082
FalI AAGNNNNNCTT 4 cut(s) 423, 455, 852, 884
FaqI GGGAC 2 cut(s) 604, 683
FatI CATG 6 cut(s) 180, 482, 541, 589, 992, 1078
FauNDI CATATG 1 cut(s) 679
FblI GTMKAC 2 cut(s) 399, 702
Fnu4HI GCNGC 3 cut(s) 252, 327, 494
FokI GGATG 2 cut(s) 1049, 1208
Fsp4HI GCNGC 3 cut(s) 252, 327, 494
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 1250
GluI GCNGC 3 cut(s) 252, 327, 494
GsaI CCCAGC 1 cut(s) 563
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 7 cut(s) 276, 380, 418, 452, 564, 748, 789
HapII CCGG 4 cut(s) 449, 740, 776, 972
HgaI GACGC 1 cut(s) 1220
HhaI GCGC 1 cut(s) 1251
Hin1II CATG 6 cut(s) 184, 486, 545, 593, 996, 1082
Hin6I GCGC 1 cut(s) 1249
HinP1I GCGC 1 cut(s) 1249
HindIII AAGCTT 1 cut(s) 893
HinfI GANTC 8 cut(s) 61, 89, 164, 199, 302, 467, 719, 1160
HpaII CCGG 4 cut(s) 449, 740, 776, 972
HphI GGTGA 5 cut(s) 70, 401, 956, 1064, 1226
Hpy166II GTNNAC 3 cut(s) 400, 582, 703
Hpy188I TCNGA 4 cut(s) 204, 735, 1167, 1216
Hpy188III TCNNGA 4 cut(s) 95, 122, 860, 972
Hpy8I GTNNAC 3 cut(s) 400, 582, 703
HpyAV CCTTC 4 cut(s) 4, 48, 216, 1210
HpyCH4III ACNGT 2 cut(s) 480, 855
HpyCH4IV ACGT 2 cut(s) 402, 609
HpyCH4V TGCA 7 cut(s) 34, 160, 254, 473, 582, 650, 770
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 499
HpyF3I CTNAG 4 cut(s) 50, 96, 891, 1221
HpySE526I ACGT 2 cut(s) 402, 609
Hsp92II CATG 6 cut(s) 184, 486, 545, 593, 996, 1082
HspAI GCGC 1 cut(s) 1249
Kpn2I TCCGGA 1 cut(s) 971
Kzo9I GATC 4 cut(s) 360, 613, 982, 1081
LmnI GCTCC 3 cut(s) 79, 334, 490
Lsp1109I GCAGC 3 cut(s) 238, 313, 480
LweI GCATC 2 cut(s) 637, 1186
MaeI CTAG 1 cut(s) 107
MaeII ACGT 2 cut(s) 402, 609
MaeIII GTNAC 4 cut(s) 389, 602, 824, 1232
MalI GATC 4 cut(s) 362, 615, 984, 1083
MboI GATC 4 cut(s) 360, 613, 982, 1081
MboII GAAGA 4 cut(s) 217, 823, 1076, 1113
MhlI GDGCHC 1 cut(s) 584
MlsI TGGCCA 1 cut(s) 380
MluCI AATT 9 cut(s) 35, 173, 260, 508, 635, 953, 978, 1117, 1186
MluNI TGGCCA 1 cut(s) 380
MlyI GAGTC 2 cut(s) 713, 1169
MmeI TCCRAC 3 cut(s) 166, 333, 1010
Mox20I TGGCCA 1 cut(s) 380
MroI TCCGGA 1 cut(s) 971
MroXI GAANNNNTTC 2 cut(s) 198, 1070
MscI TGGCCA 1 cut(s) 380
MseI TTAA 4 cut(s) 39, 66, 870, 1116
MslI CAYNNNNRTG 1 cut(s) 628
Msp20I TGGCCA 1 cut(s) 380
MspI CCGG 4 cut(s) 449, 740, 776, 972
MspR9I CCNGG 3 cut(s) 333, 777, 1193
MvaI CCWGG 2 cut(s) 333, 1193
MwoI GCNNNNNNNGC 2 cut(s) 79, 499
NciI CCSGG 1 cut(s) 777
NdeI CATATG 1 cut(s) 679
NdeII GATC 4 cut(s) 360, 613, 982, 1081
NlaIII CATG 6 cut(s) 184, 486, 545, 593, 996, 1082
NlaIV GGNNCC 1 cut(s) 788
NmuCI GTSAC 2 cut(s) 389, 1232
NspV TTCGAA 1 cut(s) 167
PaeR7I CTCGAG 1 cut(s) 74
PdmI GAANNNNTTC 2 cut(s) 198, 1070
PfeI GAWTC 6 cut(s) 61, 89, 164, 199, 302, 467
PfoI TCCNGGA 1 cut(s) 1191
PkrI GCNGC 3 cut(s) 253, 328, 495
PleI GAGTC 2 cut(s) 713, 1168
PpsI GAGTC 2 cut(s) 713, 1168
Ppu21I YACGTR 1 cut(s) 403
PshBI ATTAAT 1 cut(s) 1116
Psp6I CCWGG 2 cut(s) 331, 1191
PspFI CCCAGC 1 cut(s) 559
PspGI CCWGG 2 cut(s) 331, 1191
PspN4I GGNNCC 1 cut(s) 788
PspPI GGNCC 4 cut(s) 353, 562, 747, 787
PspXI VCTCGAGB 1 cut(s) 74
RsaI GTAC 3 cut(s) 29, 179, 436
RsaNI GTAC 3 cut(s) 28, 178, 435
RseI CAYNNNNRTG 1 cut(s) 628
SaqAI TTAA 4 cut(s) 39, 66, 870, 1116
SatI GCNGC 3 cut(s) 252, 327, 494
Sau3AI GATC 4 cut(s) 360, 613, 982, 1081
Sau96I GGNCC 4 cut(s) 353, 562, 747, 787
SchI GAGTC 2 cut(s) 713, 1169
ScrFI CCNGG 3 cut(s) 333, 777, 1193
SduI GDGCHC 1 cut(s) 584
SfaNI GCATC 2 cut(s) 637, 1186
SfcI CTRYAG 1 cut(s) 1005
Sfr274I CTCGAG 1 cut(s) 74
SfuI TTCGAA 1 cut(s) 167
SinI GGWCC 1 cut(s) 353
SlaI CTCGAG 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 628
SmlI CTYRAG 2 cut(s) 74, 810
SmoI CTYRAG 2 cut(s) 74, 810
SnaBI TACGTA 1 cut(s) 403
SpeI ACTAGT 1 cut(s) 106
Sse9I AATT 9 cut(s) 35, 173, 260, 508, 635, 953, 978, 1117, 1186
SsiI CCGC 2 cut(s) 1034, 1255
SspI AATATT 1 cut(s) 1114
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 3 cut(s) 331, 775, 1191
TaaI ACNGT 2 cut(s) 480, 855
TaiI ACGT 2 cut(s) 405, 612
TaqI TCGA 4 cut(s) 15, 75, 167, 834
TasI AATT 9 cut(s) 35, 173, 260, 508, 635, 953, 978, 1117, 1186
TatI WGTACW 2 cut(s) 27, 177
TfiI GAWTC 6 cut(s) 61, 89, 164, 199, 302, 467
Tru1I TTAA 4 cut(s) 39, 66, 870, 1116
Tru9I TTAA 4 cut(s) 39, 66, 870, 1116
TscAI CASTG 1 cut(s) 732
TseFI GTSAC 2 cut(s) 389, 1232
TseI GCWGC 3 cut(s) 251, 326, 493
Tsp45I GTSAC 2 cut(s) 389, 1232
TspDTI ATGAA 5 cut(s) 225, 539, 628, 696, 981
TspGWI ACGGA 1 cut(s) 327
TspRI CASTG 1 cut(s) 732
VneI GTGCAC 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 353
VspI ATTAAT 1 cut(s) 1116
XapI RAATTY 3 cut(s) 260, 635, 953
XhoI CTCGAG 1 cut(s) 74
XmiI GTMKAC 2 cut(s) 399, 702
XmnI GAANNNNTTC 2 cut(s) 198, 1070
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.